Csa7G162530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G162530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 6391666 .. 6391969 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCGAAAAGCTACTGCGATGCCGCACATGAAGTCGGCAACAACGTCGGTAAAAGTTCGTCAGGGATACTTTTCGGGACGCCGCTCGCTGCCACGTCGCAAAATATTTCCCCCGTGCACGATCTCAATACGTCGCGGACGACTTTTGCAGCACCGACGTCATGGAACGCTTCGACGATGCAGACGTCAAGGAAGGCTTCAACGGCACAAACGTCGCGGTAGGATTATGCGATGTCGGCGTCGCAGTAGGCTTCTGCGGCGCAAACGTTGCAGAAAGCTTTTACGACGCGGGCGTCGTATAA

mRNA sequence

ATGTCGCGAAAAGCTACTGCGATGCCGCACATGAAGTCGGCAACAACGTCGGTAAAAGTTCGTCAGGGATACTTTTCGGGACGCCGCTCGCTGCCACGTCGCAAAATATTTCCCCCCACCGACGTCATGGAACGCTTCGACGATGCAGACGTCAAGGAAGGCTTCAACGGCACAAACGTCGCGGTAGGATTATGCGATGTCGGCGTCGCAGTAGGCTTCTGCGGCGCAAACGTTGCAGAAAGCTTTTACGACGCGGGCGTCGTATAA

Coding sequence (CDS)

ATGTCGCGAAAAGCTACTGCGATGCCGCACATGAAGTCGGCAACAACGTCGGTAAAAGTTCGTCAGGGATACTTTTCGGGACGCCGCTCGCTGCCACGTCGCAAAATATTTCCCCCCACCGACGTCATGGAACGCTTCGACGATGCAGACGTCAAGGAAGGCTTCAACGGCACAAACGTCGCGGTAGGATTATGCGATGTCGGCGTCGCAGTAGGCTTCTGCGGCGCAAACGTTGCAGAAAGCTTTTACGACGCGGGCGTCGTATAA

Protein sequence

MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFYDAGVV*

Homology

[Close]

BLAST of Csa7G162530 vs. TrEMBL
Match: A0A0A0K568_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G162530 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60
          MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV
Sbjct: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60

Query: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 89
          AVGLCDVGVAVGFCGANVAESFYDAGVV
Sbjct: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 88

[Close]

BLAST of Csa7G162530 vs. TrEMBL
Match: A0A0A0L3S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499290 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 24 YFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFY 83
          YF   RS      F   DV +   DADV EGF G ++  GLCD  V V FC  +VAESFY
Sbjct: 25 YFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFY 84

Query: 84 DAGV 88
          DAGV
Sbjct: 85 DAGV 88

[Close]

BLAST of Csa7G162530 vs. NCBI nr
Match: gi|700188836|gb|KGN44069.1| (hypothetical protein Csa_7G162530 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60
          MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV
Sbjct: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60

Query: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 89
          AVGLCDVGVAVGFCGANVAESFYDAGVV
Sbjct: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 88

[Close]

BLAST of Csa7G162530 vs. NCBI nr
Match: gi|700199633|gb|KGN54791.1| (hypothetical protein Csa_4G499290 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 24 YFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFY 83
          YF   RS      F   DV +   DADV EGF G ++  GLCD  V V FC  +VAESFY
Sbjct: 25 YFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFY 84

Query: 84 DAGV 88
          DAGV
Sbjct: 85 DAGV 88

The following BLAST results are available for this feature:

BLAST of Csa7G162530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K568_CUCSA	8.2e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G162530 PE=4 SV=1	[more]
A0A0A0L3S9_CUCSA	4.2e-07	51.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499290 PE=4 SV=1	[more]

BLAST of Csa7G162530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188836\|gb\|KGN44069.1\|	1.2e-42	100.00	hypothetical protein Csa_7G162530 [Cucumis sativus]	[more]
gi\|700199633\|gb\|KGN54791.1\|	6.1e-07	51.56	hypothetical protein Csa_4G499290 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G162530.1	Csa7G162530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G162530	CSPI07G08820	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G162530	Cucumber (Gy14) v2	cgybcuB323
Csa7G162530	Cucumber (Gy14) v2	cgybcuB327
Csa7G162530	Melon (DHL92) v3.6.1	cumedB523
Csa7G162530	Silver-seed gourd	carcuB0900
Csa7G162530	Silver-seed gourd	carcuB0924
Csa7G162530	Watermelon (97103) v2	cuwmbB566
Csa7G162530	Wax gourd	cuwgoB699
Csa7G162530	Cucumber (Gy14) v1	cgycuB546
Csa7G162530	Cucurbita maxima (Rimu)	cmacuB042
Csa7G162530	Cucurbita maxima (Rimu)	cmacuB501
Csa7G162530	Cucurbita moschata (Rifu)	cmocuB031
Csa7G162530	Cucurbita moschata (Rifu)	cmocuB489
Csa7G162530	Melon (DHL92) v3.5.1	cumeB544
Csa7G162530	Watermelon (Charleston Gray)	cuwcgB522
Csa7G162530	Watermelon (97103) v1	cuwmB563
Csa7G162530	Cucurbita pepo (Zucchini)	cpecuB591
Csa7G162530	Cucurbita pepo (Zucchini)	cpecuB800
Csa7G162530	Bottle gourd (USVL1VR-Ls)	culsiB513