Csa7G113340 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G113340
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNAD-dependent protein deacetylase SRT1
LocationChr7 : 5863426 .. 5863605 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGGGCTACGCAGAGAAGCTTTCGTACATAGAAGACGTAGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCATGTCTTAGAAGAAAAGGTCGATATTTCTTTTCTTCTGTGTAATTTCGTTTCTGGGGTTTTGTTTTGGACTTCTGATCTTGTGTTTTGTTTGTCGTAG

mRNA sequence

ATGTCTCTGGGCTACGCAGAGAAGCTTTCGTACATAGAAGACGTAGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCATGTCTTAGAAGAAAAGGTCGATATTTCTTTTCTTCTGTGTAATTTCGTTTCTGGGGTTTTGTTTTGGACTTCTGATCTTGTGTTTTGTTTGTCGTAG

Coding sequence (CDS)

ATGTCTCTGGGCTACGCAGAGAAGCTTTCGTACATAGAAGACGTAGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCATGTCTTAGAAGAAAAGGTCGATATTTCTTTTCTTCTGTGTAATTTCGTTTCTGGGGTTTTGTTTTGGACTTCTGATCTTGTGTTTTGTTTGTCGTAG

Protein sequence

MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS*
Homology
[Close]
BLAST of Csa7G113340 vs. Swiss-Prot
Match: SIR1_ARATH (NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLS+IEDVG+VGM E FDP H+L+ K++
Sbjct: 1  MSLGYAEKLSFIEDVGQVGMAEFFDPSHLLQCKIE 35

[Close]
BLAST of Csa7G113340 vs. Swiss-Prot
Match: SIR1_ORYSI (NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica GN=SRT1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSY EDVG VGM E FD P +L +K++
Sbjct: 1  MSLGYAEKLSYREDVGNVGMPEIFDSPELLHKKIE 35

[Close]
BLAST of Csa7G113340 vs. TrEMBL
Match: A0A0A0K316_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G113340 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS 60
          MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS
Sbjct: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS 59

[Close]
BLAST of Csa7G113340 vs. TrEMBL
Match: M5WH45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005233mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-09
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVG+VGMTEHFDPP VL+EK++
Sbjct: 1  MSLGYAEKLSYIEDVGQVGMTEHFDPPPVLQEKIE 35

[Close]
BLAST of Csa7G113340 vs. TrEMBL
Match: A0A124SE75_CYNCS (Sirtuin family OS=Cynara cardunculus var. scolymus GN=Ccrd_022563 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVG VGMTE FDPPHVL+EK++
Sbjct: 1  MSLGYAEKLSYIEDVGNVGMTEIFDPPHVLQEKIE 35

[Close]
BLAST of Csa7G113340 vs. TrEMBL
Match: A0A072UXC4_MEDTR (NAD-dependent protein deacetylase SRT2 OS=Medicago truncatula GN=MTR_3g460800 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVG VGMTEHFDP HVL EK++
Sbjct: 1  MSLGYAEKLSYIEDVGNVGMTEHFDPSHVLLEKIE 35

[Close]
BLAST of Csa7G113340 vs. TrEMBL
Match: W9QMX3_9ROSA (NAD-dependent deacetylase sirtuin-6 OS=Morus notabilis GN=L484_018216 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-08
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLS+IEDVGKVGM E FDPPH+L+EKV+
Sbjct: 1  MSLGYAEKLSFIEDVGKVGMAEFFDPPHILQEKVE 35

[Close]
BLAST of Csa7G113340 vs. TAIR10
Match: AT5G55760.1 (AT5G55760.1 sirtuin 1)

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-09
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLS+IEDVG+VGM E FDP H+L+ K++
Sbjct: 1  MSLGYAEKLSFIEDVGQVGMAEFFDPSHLLQCKIE 35

[Close]
BLAST of Csa7G113340 vs. NCBI nr
Match: gi|700188797|gb|KGN44030.1| (hypothetical protein Csa_7G113340 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS 60
          MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS
Sbjct: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVDISFLLCNFVSGVLFWTSDLVFCLS 59

[Close]
BLAST of Csa7G113340 vs. NCBI nr
Match: gi|449462391|ref|XP_004148924.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-10
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEK++
Sbjct: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKIE 35

[Close]
BLAST of Csa7G113340 vs. NCBI nr
Match: gi|659126086|ref|XP_008463003.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-10
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVG+VGMTEHFDPPHVLEEK++
Sbjct: 1  MSLGYAEKLSYIEDVGQVGMTEHFDPPHVLEEKIE 35

[Close]
BLAST of Csa7G113340 vs. NCBI nr
Match: gi|659126090|ref|XP_008463005.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X3 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-10
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVG+VGMTEHFDPPHVLEEK++
Sbjct: 1  MSLGYAEKLSYIEDVGQVGMTEHFDPPHVLEEKIE 35

[Close]
BLAST of Csa7G113340 vs. NCBI nr
Match: gi|645241615|ref|XP_008227160.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume])

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MSLGYAEKLSYIEDVGKVGMTEHFDPPHVLEEKVD 36
          MSLGYAEKLSYIEDVG+VGMTEHFDPPHVL+EK++
Sbjct: 1  MSLGYAEKLSYIEDVGQVGMTEHFDPPHVLQEKIE 35

The following BLAST results are available for this feature:
BLAST of Csa7G113340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIR1_ARATH1.1e-0771.43NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1[more]
SIR1_ORYSI2.6e-0668.57NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica GN=SRT1 PE=... [more]
BLAST of Csa7G113340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K316_CUCSA2.7e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G113340 PE=4 SV=1[more]
M5WH45_PRUPE6.8e-0985.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005233mg PE=4 SV=1[more]
A0A124SE75_CYNCS1.2e-0885.71Sirtuin family OS=Cynara cardunculus var. scolymus GN=Ccrd_022563 PE=4 SV=1[more]
A0A072UXC4_MEDTR2.0e-0885.71NAD-dependent protein deacetylase SRT2 OS=Medicago truncatula GN=MTR_3g460800 PE... [more]
W9QMX3_9ROSA2.0e-0882.86NAD-dependent deacetylase sirtuin-6 OS=Morus notabilis GN=L484_018216 PE=4 SV=1[more]
BLAST of Csa7G113340 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55760.16.1e-0971.43 sirtuin 1[more]
BLAST of Csa7G113340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188797|gb|KGN44030.1|3.9e-26100.00hypothetical protein Csa_7G113340 [Cucumis sativus][more]
gi|449462391|ref|XP_004148924.1|1.0e-1094.29PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis sativus][more]
gi|659126086|ref|XP_008463003.1|3.0e-1091.43PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis melo][more]
gi|659126090|ref|XP_008463005.1|3.0e-1091.43PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X3 [Cucumis melo][more]
gi|645241615|ref|XP_008227160.1|6.7e-1088.57PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003000Sirtuin
Vocabulary: Molecular Function
TermDefinition
GO:0070403NAD+ binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006471 protein ADP-ribosylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0070403 NAD+ binding
molecular_function GO:0003956 NAD(P)+-protein-arginine ADP-ribosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G113340.1Csa7G113340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003000Sirtuin familyPANTHERPTHR11085CHROMATIN REGULATORY PROTEIN SIR2coord: 1..35
score: 1.2
NoneNo IPR availablePANTHERPTHR11085:SF20NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6coord: 1..35
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G113340Wax gourdcuwgoB694
Csa7G113340Cucurbita maxima (Rimu)cmacuB041
Csa7G113340Cucurbita maxima (Rimu)cmacuB498
Csa7G113340Cucurbita moschata (Rifu)cmocuB030
Csa7G113340Cucurbita moschata (Rifu)cmocuB488
Csa7G113340Melon (DHL92) v3.5.1cumeB537
Csa7G113340Watermelon (Charleston Gray)cuwcgB519
Csa7G113340Watermelon (97103) v1cuwmB558
Csa7G113340Cucurbita pepo (Zucchini)cpecuB586
Csa7G113340Cucurbita pepo (Zucchini)cpecuB798
Csa7G113340Bottle gourd (USVL1VR-Ls)culsiB511
Csa7G113340Cucumber (Gy14) v2cgybcuB324
Csa7G113340Melon (DHL92) v3.6.1cumedB517
Csa7G113340Silver-seed gourdcarcuB0898
Csa7G113340Silver-seed gourdcarcuB0923
Csa7G113340Watermelon (97103) v2cuwmbB563