Csa7G111310 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G111310
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	NAD-dependent protein deacetylase SRT1
Location	Chr7 : 5809045 .. 5809332 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTAGATAAGGAGGTTGTATTTCAGAGACTAATAGAGGAGACAGTTCAAGATTCCTTCTGCGGAAAAAGCGCAGTTATCGAGCGAAAAGCCATCTCAATCCCAAAAAGCGAGGTCACTGTATATGCCATCGTAACTAACATTATTAGATACACCAAAAGTTTGAAAACACCAGCAATAGATTCACTTAGTAATGGCGATGTCAAACGACAACGAGAAAGTGTAAATGGTTCTGCCACATCTAGGAAGCGTTCAAAACGACAGAAGCGAAAATATAGACATTAG

mRNA sequence

ATGAATCTAGATAAGGAGGTTGTATTTCAGAGACTAATAGAGGAGACAGTTCAAGATTCCTTCTGCGGAAAAAGCGCAGTTATCGAGCGAAAAGCCATCTCAATCCCAAAAAGCGAGGTCACTGTATATGCCATCGTAACTAACATTATTAGATACACCAAAAGTTTGAAAACACCAGCAATAGATTCACTTAGTAATGGCGATGTCAAACGACAACGAGAAAGTGTAAATGGTTCTGCCACATCTAGGAAGCGTTCAAAACGACAGAAGCGAAAATATAGACATTAG

Coding sequence (CDS)

ATGAATCTAGATAAGGAGGTTGTATTTCAGAGACTAATAGAGGAGACAGTTCAAGATTCCTTCTGCGGAAAAAGCGCAGTTATCGAGCGAAAAGCCATCTCAATCCCAAAAAGCGAGGTCACTGTATATGCCATCGTAACTAACATTATTAGATACACCAAAAGTTTGAAAACACCAGCAATAGATTCACTTAGTAATGGCGATGTCAAACGACAACGAGAAAGTGTAAATGGTTCTGCCACATCTAGGAAGCGTTCAAAACGACAGAAGCGAAAATATAGACATTAG

Protein sequence

MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAIDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH*

Homology

[Close]

BLAST of Csa7G111310 vs. Swiss-Prot
Match: SIR1_ARATH (NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-12
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 3   LDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAID 62
           +DKE V Q L E+ V++S CG+S V+ER+ +S P+SE  VYA VT++  Y          
Sbjct: 382 IDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPRSEAVVYATVTSLRTYHSQQSL---- 441

Query: 63  SLSNGDVKRQRESVNGSATSRKRSKRQKRK 93
            L+NGD+K + E   GS TSRKRS+  KRK
Sbjct: 442 -LANGDLKWKLE---GSGTSRKRSRTGKRK 463

[Close]

BLAST of Csa7G111310 vs. TrEMBL
Match: A0A0A0K314_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G111310 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60
          MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA
Sbjct: 1  MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60

Query: 61 IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 96
          IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH
Sbjct: 61 IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 95

[Close]

BLAST of Csa7G111310 vs. TrEMBL
Match: M5WH45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005233mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.2e-19
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 3   LDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAID 62
           LDK+ + Q+L    +Q+S CG++AV+ER A+  PK+EV VYAIVTN+IRY K+ +    D
Sbjct: 380 LDKDAILQKLRHTAIQESCCGQNAVVERNAMLTPKTEVIVYAIVTNVIRYKKTTEALEAD 439

Query: 63  SLSNGDVKRQRESVNGSATSRKRSKRQKRKYR 95
           SL NG VKR+RES NG+ TSRKRSK  +RK R
Sbjct: 440 SLGNG-VKRRRESANGTETSRKRSKVHRRKPR 470

[Close]

BLAST of Csa7G111310 vs. TrEMBL
Match: A0A0B2PUC7_GLYSO (NAD-dependent deacetylase sirtuin-6 OS=Glycine soja GN=glysoja_039415 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 48/86 (55.81%), Postives = 70/86 (81.40%), Query Frame = 1


Query: 2   NLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAI 61
           + DK+ +FQ+L ++ V +S CG++AVIERKAI  P+S+VT YAIVTN+++Y+K+ K  A+
Sbjct: 379 DFDKDYIFQKLRDKAVLESRCGQNAVIERKAILTPRSDVTTYAIVTNVVQYSKTCKA-AL 438

Query: 62  DSLSNGDVKRQRESVNGSATSRKRSK 88
           DSLSNGD K+++ SV G+ +SRKRSK
Sbjct: 439 DSLSNGDFKKRKASVTGTGSSRKRSK 463

[Close]

BLAST of Csa7G111310 vs. TrEMBL
Match: I1KYK3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G330200 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 48/86 (55.81%), Postives = 70/86 (81.40%), Query Frame = 1


Query: 2   NLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAI 61
           + DK+ +FQ+L ++ V +S CG++AVIERKAI  P+S+VT YAIVTN+++Y+K+ K  A+
Sbjct: 340 DFDKDYIFQKLRDKAVLESRCGQNAVIERKAILTPRSDVTTYAIVTNVVQYSKTCKA-AL 399

Query: 62  DSLSNGDVKRQRESVNGSATSRKRSK 88
           DSLSNGD K+++ SV G+ +SRKRSK
Sbjct: 400 DSLSNGDFKKRKASVTGTGSSRKRSK 424

[Close]

BLAST of Csa7G111310 vs. TrEMBL
Match: A0A067KWD8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01025 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 2   NLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAI 61
           NLDKEVV Q L E+ +QD  CG++A++ERK I  PK+E+TV+AIVTNI       K+   
Sbjct: 379 NLDKEVVIQNLREKAIQDFCCGQNAMVERKVILAPKTELTVHAIVTNI-------KSFEP 438

Query: 62  DSLSNGDVKRQRESVNGSATSRKRSKRQKRKYR 95
           DSLSNGD+K+ R S NG+ TSRKRSK +KRK R
Sbjct: 439 DSLSNGDMKKPRLSFNGTGTSRKRSKGRKRKSR 464

[Close]

BLAST of Csa7G111310 vs. TAIR10
Match: AT5G55760.1 (AT5G55760.1 sirtuin 1)

HSP 1 Score: 73.9 bits (180), Expect = 5.9e-14
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 3   LDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPAID 62
           +DKE V Q L E+ V++S CG+S V+ER+ +S P+SE  VYA VT++  Y          
Sbjct: 382 IDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPRSEAVVYATVTSLRTYHSQQSL---- 441

Query: 63  SLSNGDVKRQRESVNGSATSRKRSKRQKRK 93
            L+NGD+K + E   GS TSRKRS+  KRK
Sbjct: 442 -LANGDLKWKLE---GSGTSRKRSRTGKRK 463

[Close]

BLAST of Csa7G111310 vs. NCBI nr
Match: gi|449462391|ref|XP_004148924.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1   MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60
           MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA
Sbjct: 378 MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 437

Query: 61  IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 96
           IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH
Sbjct: 438 IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 472

[Close]

BLAST of Csa7G111310 vs. NCBI nr
Match: gi|778725368|ref|XP_011658936.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X2 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1   MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60
           MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA
Sbjct: 288 MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 347

Query: 61  IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 96
           IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH
Sbjct: 348 IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 382

[Close]

BLAST of Csa7G111310 vs. NCBI nr
Match: gi|700188792|gb|KGN44025.1| (hypothetical protein Csa_7G111310 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60
          MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA
Sbjct: 1  MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60

Query: 61 IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 96
          IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH
Sbjct: 61 IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 95

[Close]

BLAST of Csa7G111310 vs. NCBI nr
Match: gi|659126088|ref|XP_008463004.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X2 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 1


Query: 1   MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60
           MNLDKEVVFQRLIEETVQ+SFCGKSAVIERKAISIPKSEVTVYAIVTNIIRY KSLK+ A
Sbjct: 288 MNLDKEVVFQRLIEETVQNSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYAKSLKSLA 347

Query: 61  IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 96
           IDSLSNGDVKRQRES+NGSATSRKRSKR+KRKYRH
Sbjct: 348 IDSLSNGDVKRQRESINGSATSRKRSKRKKRKYRH 382

[Close]

BLAST of Csa7G111310 vs. NCBI nr
Match: gi|659126086|ref|XP_008463003.1| (PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 1


Query: 1   MNLDKEVVFQRLIEETVQDSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYTKSLKTPA 60
           MNLDKEVVFQRLIEETVQ+SFCGKSAVIERKAISIPKSEVTVYAIVTNIIRY KSLK+ A
Sbjct: 378 MNLDKEVVFQRLIEETVQNSFCGKSAVIERKAISIPKSEVTVYAIVTNIIRYAKSLKSLA 437

Query: 61  IDSLSNGDVKRQRESVNGSATSRKRSKRQKRKYRH 96
           IDSLSNGDVKRQRES+NGSATSRKRSKR+KRKYRH
Sbjct: 438 IDSLSNGDVKRQRESINGSATSRKRSKRKKRKYRH 472

The following BLAST results are available for this feature:

BLAST of Csa7G111310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIR1_ARATH	1.0e-12	46.67	NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1	[more]

BLAST of Csa7G111310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K314_CUCSA	4.7e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G111310 PE=4 SV=1	[more]
M5WH45_PRUPE	5.2e-19	56.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005233mg PE=4 SV=1	[more]
A0A0B2PUC7_GLYSO	1.5e-18	55.81	NAD-dependent deacetylase sirtuin-6 OS=Glycine soja GN=glysoja_039415 PE=4 SV=1	[more]
I1KYK3_SOYBN	1.5e-18	55.81	Uncharacterized protein OS=Glycine max GN=GLYMA_08G330200 PE=4 SV=1	[more]
A0A067KWD8_JATCU	3.4e-18	58.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01025 PE=4 SV=1	[more]

BLAST of Csa7G111310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55760.1	5.9e-14	46.67	sirtuin 1	[more]

BLAST of Csa7G111310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462391\|ref\|XP_004148924.1\|	6.7e-44	100.00	PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis sativus]	[more]
gi\|778725368\|ref\|XP_011658936.1\|	6.7e-44	100.00	PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X2 [Cucumis sativus]	[more]
gi\|700188792\|gb\|KGN44025.1\|	6.7e-44	100.00	hypothetical protein Csa_7G111310 [Cucumis sativus]	[more]
gi\|659126088\|ref\|XP_008463004.1\|	1.5e-40	93.68	PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X2 [Cucumis melo]	[more]
gi\|659126086\|ref\|XP_008463003.1\|	1.5e-40	93.68	PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006471	protein ADP-ribosylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0070403	NAD+ binding
molecular_function	GO:0003956	NAD(P)+-protein-arginine ADP-ribosyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU122310	cucumber EST collection version 3.0	transcribed_cluster
CU122321	cucumber EST collection version 3.0	transcribed_cluster
CU122418	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G111310.1	Csa7G111310.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU122418	CU122418	transcribed_cluster
CU122321	CU122321	transcribed_cluster
CU122310	CU122310	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G111310	Cla003313	Watermelon (97103) v1	cuwmB558
Csa7G111310	MELO3C024942	Melon (DHL92) v3.5.1	cumeB537
Csa7G111310	ClCG09G021370	Watermelon (Charleston Gray)	cuwcgB519
Csa7G111310	Lsi02G018230	Bottle gourd (USVL1VR-Ls)	culsiB511
Csa7G111310	MELO3C024942.2	Melon (DHL92) v3.6.1	cumedB517
Csa7G111310	Cla97C09G182760	Watermelon (97103) v2	cuwmbB563
Csa7G111310	Bhi09G001483	Wax gourd	cuwgoB694
Csa7G111310	CSPI07G08250	Wild cucumber (PI 183967)	cpicuB354
Csa7G111310	CmaCh09G010140	Cucurbita maxima (Rimu)	cmacuB041
Csa7G111310	Cp4.1LG06g08300	Cucurbita pepo (Zucchini)	cpecuB798
Csa7G111310	CsGy7G007820	Cucumber (Gy14) v2	cgybcuB324
Csa7G111310	Carg12878	Silver-seed gourd	carcuB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G111310	Cucurbita maxima (Rimu)	cmacuB498
Csa7G111310	Cucurbita moschata (Rifu)	cmocuB030
Csa7G111310	Cucurbita moschata (Rifu)	cmocuB488
Csa7G111310	Cucurbita pepo (Zucchini)	cpecuB586
Csa7G111310	Silver-seed gourd	carcuB0898