Csa7G091720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G091720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationChr7 : 5515189 .. 5515479 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCAGAAGTGGCACTCCAACTGATGGGGTTTAACACAGCAAAGGACCTCTGGGAAGCCATACAAGATTTATTCGGAGTACAATTAAGGGCAGAGGAAGATTTTCTTAGGCACACATTTCAGACTACTCAAAAAGGTAATTCTAAGATGGAAGATTATTTGCACCATATGAAAACTAATGTTGATAACCTCGACCAAGCTGGGAGTCATGTTCCTCTTCATTCCTTAATTTCTCAGGTCATATTGGGGTTAGATGAAATTTACAACCCTGTAACCGCTGTTATTTAG

mRNA sequence

ATGACACCAGAAGTGGCACTCCAACTGATGGGGTTTAACACAGCAAAGGACCTCTGGGAAGCCATACAAGATTTATTCGGAGTACAATTAAGGGCAGAGGAAGATTTTCTTAGGCACACATTTCAGACTACTCAAAAAGGTAATTCTAAGATGGAAGATTATTTGCACCATATGAAAACTAATGTTGATAACCTCGACCAAGCTGGGAGTCATGTTCCTCTTCATTCCTTAATTTCTCAGGTCATATTGGGGTTAGATGAAATTTACAACCCTGTAACCGCTGTTATTTAG

Coding sequence (CDS)

ATGACACCAGAAGTGGCACTCCAACTGATGGGGTTTAACACAGCAAAGGACCTCTGGGAAGCCATACAAGATTTATTCGGAGTACAATTAAGGGCAGAGGAAGATTTTCTTAGGCACACATTTCAGACTACTCAAAAAGGTAATTCTAAGATGGAAGATTATTTGCACCATATGAAAACTAATGTTGATAACCTCGACCAAGCTGGGAGTCATGTTCCTCTTCATTCCTTAATTTCTCAGGTCATATTGGGGTTAGATGAAATTTACAACCCTGTAACCGCTGTTATTTAG

Protein sequence

MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKTNVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI*
Homology
[Close]
BLAST of Csa7G091720 vs. TrEMBL
Match: A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
          MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
          NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of Csa7G091720 vs. TrEMBL
Match: A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-30
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 1 

Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           +TPEV +QL+GF  AKD+WEA  D FGV+ RAEEDFLR TFQTT+KGNS MEDYL  MKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL QA S +P  +LISQV+LGLDE+YNPV  VI
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVI 121

[Close]
BLAST of Csa7G091720 vs. TrEMBL
Match: A0A0A0LFV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850540 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
          M P+V LQ MGFNT +DLW+ IQDLFGVQ R EEDFL  TF TT+K N  MEDYL  MKT
Sbjct: 1  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60

Query: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAV 96
          N DNL QAGS VP  S ISQ ++ +D I  P+  V
Sbjct: 61 NTDNLSQAGSPVPPRSSISQGVI-IDRILIPINLV 94

[Close]
BLAST of Csa7G091720 vs. TrEMBL
Match: A0A0A0L1H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329050 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.6e-21
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 1  MTPEVALQLMGFNTAKDLWEAI-QDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMK 60
          MT EVA+QLM F  AKDLWEAI QD  GVQ R EE+FL+ T QTT+K NSKMEDYLH  K
Sbjct: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61 TNVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL Q  S VP   ++S V+L L+E+YN V AV+
Sbjct: 61 MNADNLSQTDSLVP-PQVLSYVLLELNEVYNMVIAVV 96

[Close]
BLAST of Csa7G091720 vs. TrEMBL
Match: A0A151R6N1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040630 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           MT EV  QL+ + T++ +WE  Q L G   R    FL+  FQ T+KG  K E+YL  MK 
Sbjct: 90  MTQEVTTQLLHYETSQQIWEDAQSLAGAHTRLRITFLKTEFQRTRKGGLKKEEYLTKMKE 149

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPV 93
             DNL  AGS V +  LI+Q + GLD  YNP+
Sbjct: 150 IADNLALAGSSVSIMDLITQTLAGLDNEYNPI 181

[Close]
BLAST of Csa7G091720 vs. NCBI nr
Match: gi|700188770|gb|KGN44003.1| (hypothetical protein Csa_7G091720 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
          MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
          NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of Csa7G091720 vs. NCBI nr
Match: gi|700210588|gb|KGN65684.1| (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-30
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 1 

Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           +TPEV +QL+GF  AKD+WEA  D FGV+ RAEEDFLR TFQTT+KGNS MEDYL  MKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL QA S +P  +LISQV+LGLDE+YNPV  VI
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVI 121

[Close]
BLAST of Csa7G091720 vs. NCBI nr
Match: gi|700204716|gb|KGN59849.1| (hypothetical protein Csa_3G850540 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
          M P+V LQ MGFNT +DLW+ IQDLFGVQ R EEDFL  TF TT+K N  MEDYL  MKT
Sbjct: 1  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60

Query: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAV 96
          N DNL QAGS VP  S ISQ ++ +D I  P+  V
Sbjct: 61 NTDNLSQAGSPVPPRSSISQGVI-IDRILIPINLV 94

[Close]
BLAST of Csa7G091720 vs. NCBI nr
Match: gi|700199274|gb|KGN54432.1| (hypothetical protein Csa_4G329050 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-20
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 1  MTPEVALQLMGFNTAKDLWEAI-QDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMK 60
          MT EVA+QLM F  AKDLWEAI QD  GVQ R EE+FL+ T QTT+K NSKMEDYLH  K
Sbjct: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61 TNVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL Q  S VP   ++S V+L L+E+YN V AV+
Sbjct: 61 MNADNLSQTDSLVP-PQVLSYVLLELNEVYNMVIAVV 96

[Close]
BLAST of Csa7G091720 vs. NCBI nr
Match: gi|1012326331|gb|KYP38146.1| (hypothetical protein KK1_040630 [Cajanus cajan])

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-13
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           MT EV  QL+ + T++ +WE  Q L G   R    FL+  FQ T+KG  K E+YL  MK 
Sbjct: 90  MTQEVTTQLLHYETSQQIWEDAQSLAGAHTRLRITFLKTEFQRTRKGGLKKEEYLTKMKE 149

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPV 93
             DNL  AGS V +  LI+Q + GLD  YNP+
Sbjct: 150 IADNLALAGSSVSIMDLITQTLAGLDNEYNPI 181

The following BLAST results are available for this feature:
BLAST of Csa7G091720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3F9_CUCSA1.6e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1[more]
A0A0A0LXB7_CUCSA2.3e-3069.79Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1[more]
A0A0A0LFV1_CUCSA3.5e-2362.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850540 PE=4 SV=1[more]
A0A0A0L1H3_CUCSA9.6e-2161.86Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329050 PE=4 SV=1[more]
A0A151R6N1_CAJCA4.3e-1345.65Uncharacterized protein OS=Cajanus cajan GN=KK1_040630 PE=4 SV=1[more]
BLAST of Csa7G091720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188770|gb|KGN44003.1|2.2e-47100.00hypothetical protein Csa_7G091720 [Cucumis sativus][more]
gi|700210588|gb|KGN65684.1|3.3e-3069.79hypothetical protein Csa_1G496800 [Cucumis sativus][more]
gi|700204716|gb|KGN59849.1|5.0e-2362.11hypothetical protein Csa_3G850540 [Cucumis sativus][more]
gi|700199274|gb|KGN54432.1|1.4e-2061.86hypothetical protein Csa_4G329050 [Cucumis sativus][more]
gi|1012326331|gb|KYP38146.1|6.2e-1345.65hypothetical protein KK1_040630 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G091720.1Csa7G091720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..93
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G091720ClCG01G016080Watermelon (Charleston Gray)cuwcgB538
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G091720Cucurbita maxima (Rimu)cmacuB498
Csa7G091720Cucurbita pepo (Zucchini)cpecuB586
Csa7G091720Cucurbita pepo (Zucchini)cpecuB798
Csa7G091720Cucumber (Gy14) v2cgybcuB324
Csa7G091720Silver-seed gourdcarcuB0898