Csa7G043690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G043690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 2487617 .. 2487949 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGACAATATTGATAATGGTTTTGAAGACGCAATGCCTGATGTCAATCAGCCAGATATTGGTGATCCCAACAATCATTTTATGGATGAGGCTACGTGTTTTGAGAATGAAAAGGTTGAGTCAACTGTGCGGCACATTCTTATTGTAGGCTAATTTTTCTTTTGAATTACTATTGACTGTTAAGTCATGGGTTTTATGCAGCATGATGCTGCGGCTCATTTTGATAATGGTGAAGCGTACGAACCTGAATTTCCAGATTCTCGTTCAAGTCTAGAAGATCTTTGTCGCTCTCATCTTGTAAGTGATATCTGTGGACTTATCACTTGA

mRNA sequence

ATGGAAGATGACAATATTGATAATGGTTTTGAAGACGCAATGCCTGATGTCAATCAGCCAGATATTGGTGATCCCAACAATCATTTTATGGATGAGGCTACGTGTTTTGAGAATGAAAAGCATGATGCTGCGGCTCATTTTGATAATGGTGAAGCGTACGAACCTGAATTTCCAGATTCTCGTTCAAGTCTAGAAGATCTTTGTCGCTCTCATCTTGTAAGTGATATCTGTGGACTTATCACTTGA

Coding sequence (CDS)

ATGGAAGATGACAATATTGATAATGGTTTTGAAGACGCAATGCCTGATGTCAATCAGCCAGATATTGGTGATCCCAACAATCATTTTATGGATGAGGCTACGTGTTTTGAGAATGAAAAGCATGATGCTGCGGCTCATTTTGATAATGGTGAAGCGTACGAACCTGAATTTCCAGATTCTCGTTCAAGTCTAGAAGATCTTTGTCGCTCTCATCTTGTAAGTGATATCTGTGGACTTATCACTTGA

Protein sequence

MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDSRSSLEDLCRSHLVSDICGLIT*

Homology

[Close]

BLAST of Csa7G043690 vs. TrEMBL
Match: A0A0A0K5J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043690 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-42
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
          MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS
Sbjct: 1  MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60

Query: 61 RSSLEDLCRSHLVSDICGLIT 82
          RSSLEDLCRSHLVSDICGLIT
Sbjct: 61 RSSLEDLCRSHLVSDICGLIT 81

[Close]

BLAST of Csa7G043690 vs. TrEMBL
Match: A0A0A0LK75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349010 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-36
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
           MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHD AAHFDNGEAYEPEFPDS
Sbjct: 398 MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDVAAHFDNGEAYEPEFPDS 457

Query: 61  RSSLEDLCRSHL 73
           RSSLEDLCRSHL
Sbjct: 458 RSSLEDLCRSHL 469

[Close]

BLAST of Csa7G043690 vs. TrEMBL
Match: A0A0A0K0I9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009110 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-33
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1   MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
           MEDDNIDNGFEDAMPDVN PDIGDPN+HFMDEA CF NEKHD AAHFDNGEAYEPEFPDS
Sbjct: 372 MEDDNIDNGFEDAMPDVNHPDIGDPNDHFMDEAMCFGNEKHDVAAHFDNGEAYEPEFPDS 431

Query: 61  RSSLEDLCRSHL 73
           RSSLEDLCRSHL
Sbjct: 432 RSSLEDLCRSHL 443

[Close]

BLAST of Csa7G043690 vs. TrEMBL
Match: A0A067JVC0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18912 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 3   DDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEK-HDAAAHFDNGEAYEPEFPDSR 62
           +D+  NG +  +PD  QPD   P N ++D      +EK HD++ HF+  EA+  E P S+
Sbjct: 401 NDDEGNGHDSGIPDFEQPDDDIPENMYVDGDLPLHHEKCHDSSTHFNTNEAFGQEDPSSQ 460

Query: 63  SSLEDLCRSHL 73
           +SLEDLCRSHL
Sbjct: 461 ASLEDLCRSHL 471

[Close]

BLAST of Csa7G043690 vs. TrEMBL
Match: V4RY87_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004466mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-08
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 7   DNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHD-AAAHFDNGEAYEPEFPDSRSSLE 66
           D G++   PD+  PD   P+  +MDE   F+++KHD   A F+  EA+E    DS ++LE
Sbjct: 410 DKGYDSGDPDIGHPDFDMPDGMYMDEDVSFQHDKHDDGPAPFEPNEAFEHGSQDSHANLE 469

Query: 67  DLCRSHL 73
           DLCRSHL
Sbjct: 470 DLCRSHL 476

[Close]

BLAST of Csa7G043690 vs. NCBI nr
Match: gi|778723800|ref|XP_011658701.1| (PREDICTED: condensin-2 complex subunit H2-like [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.1e-42
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
          MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS
Sbjct: 1  MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60

Query: 61 RSSLEDLCRSHLVSDICGLIT 82
          RSSLEDLCRSHLVSDICGLIT
Sbjct: 61 RSSLEDLCRSHLVSDICGLIT 81

[Close]

BLAST of Csa7G043690 vs. NCBI nr
Match: gi|778674272|ref|XP_011650177.1| (PREDICTED: condensin-2 complex subunit H2-like [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
           MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHD AAHFDNGEAYEPEFPDS
Sbjct: 355 MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDVAAHFDNGEAYEPEFPDS 414

Query: 61  RSSLEDLCRSHL 73
           RSSLEDLCRSHL
Sbjct: 415 RSSLEDLCRSHL 426

[Close]

BLAST of Csa7G043690 vs. NCBI nr
Match: gi|700207196|gb|KGN62315.1| (hypothetical protein Csa_2G349010 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
           MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHD AAHFDNGEAYEPEFPDS
Sbjct: 398 MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDVAAHFDNGEAYEPEFPDS 457

Query: 61  RSSLEDLCRSHL 73
           RSSLEDLCRSHL
Sbjct: 458 RSSLEDLCRSHL 469

[Close]

BLAST of Csa7G043690 vs. NCBI nr
Match: gi|778722858|ref|XP_011658583.1| (PREDICTED: condensin-2 complex subunit H2 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-33
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1   MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
           MEDDNIDNGFEDAMPDVN PDIGDPN+HFMDEA CF NEKHD AAHFDNGEAYEPEFPDS
Sbjct: 372 MEDDNIDNGFEDAMPDVNHPDIGDPNDHFMDEAMCFGNEKHDVAAHFDNGEAYEPEFPDS 431

Query: 61  RSSLEDLCRSHL 73
           RSSLEDLCRSHL
Sbjct: 432 RSSLEDLCRSHL 443

[Close]

BLAST of Csa7G043690 vs. NCBI nr
Match: gi|659087274|ref|XP_008444363.1| (PREDICTED: condensin-2 complex subunit H2 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-31
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1   MEDDNIDNGFEDAMPDVNQPDIGDPNNHFMDEATCFENEKHDAAAHFDNGEAYEPEFPDS 60
           +EDDNIDNGFEDAMPDVNQPDIGDPN+H+MDEA  F NEKHDAAAHFDN EAYEPEFPDS
Sbjct: 391 VEDDNIDNGFEDAMPDVNQPDIGDPNDHYMDEAMGFGNEKHDAAAHFDNDEAYEPEFPDS 450

Query: 61  RSSLEDLCRSHL 73
           RSSLEDLCRSHL
Sbjct: 451 RSSLEDLCRSHL 462

The following BLAST results are available for this feature:

BLAST of Csa7G043690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5J7_CUCSA	6.4e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043690 PE=4 SV=1	[more]
A0A0A0LK75_CUCSA	4.0e-36	98.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349010 PE=4 SV=1	[more]
A0A0A0K0I9_CUCSA	1.9e-33	93.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009110 PE=4 SV=1	[more]
A0A067JVC0_JATCU	1.6e-08	45.07	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18912 PE=4 SV=1	[more]
V4RY87_9ROSI	4.6e-08	44.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004466mg PE=4 SV=1	[more]

BLAST of Csa7G043690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778723800\|ref\|XP_011658701.1\|	9.1e-42	100.00	PREDICTED: condensin-2 complex subunit H2-like [Cucumis sativus]	[more]
gi\|778674272\|ref\|XP_011650177.1\|	5.7e-36	98.61	PREDICTED: condensin-2 complex subunit H2-like [Cucumis sativus]	[more]
gi\|700207196\|gb\|KGN62315.1\|	5.7e-36	98.61	hypothetical protein Csa_2G349010 [Cucumis sativus]	[more]
gi\|778722858\|ref\|XP_011658583.1\|	2.7e-33	93.06	PREDICTED: condensin-2 complex subunit H2 [Cucumis sativus]	[more]
gi\|659087274\|ref\|XP_008444363.1\|	2.5e-31	90.28	PREDICTED: condensin-2 complex subunit H2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G043690.1	Csa7G043690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G043690	Silver-seed gourd	carcuB0032
Csa7G043690	Silver-seed gourd	carcuB0375
Csa7G043690	Silver-seed gourd	carcuB0664
Csa7G043690	Silver-seed gourd	carcuB0739
Csa7G043690	Silver-seed gourd	carcuB0891
Csa7G043690	Watermelon (97103) v2	cuwmbB514
Csa7G043690	Watermelon (97103) v2	cuwmbB529
Csa7G043690	Watermelon (97103) v2	cuwmbB532
Csa7G043690	Wax gourd	cuwgoB670
Csa7G043690	Wax gourd	cuwgoB679
Csa7G043690	Wax gourd	cuwgoB687
Csa7G043690	Cucumber (Chinese Long) v2	cucuB170
Csa7G043690	Cucumber (Chinese Long) v2	cucuB078
Csa7G043690	Cucumber (Gy14) v1	cgycuB028
Csa7G043690	Cucumber (Gy14) v1	cgycuB068
Csa7G043690	Cucumber (Gy14) v1	cgycuB215
Csa7G043690	Cucurbita maxima (Rimu)	cmacuB147
Csa7G043690	Cucurbita maxima (Rimu)	cmacuB231
Csa7G043690	Cucurbita maxima (Rimu)	cmacuB527
Csa7G043690	Cucurbita maxima (Rimu)	cmacuB569
Csa7G043690	Cucurbita maxima (Rimu)	cmacuB643
Csa7G043690	Cucurbita moschata (Rifu)	cmocuB132
Csa7G043690	Cucurbita moschata (Rifu)	cmocuB518
Csa7G043690	Cucurbita moschata (Rifu)	cmocuB562
Csa7G043690	Cucurbita moschata (Rifu)	cmocuB632
Csa7G043690	Melon (DHL92) v3.5.1	cumeB516
Csa7G043690	Melon (DHL92) v3.5.1	cumeB530
Csa7G043690	Melon (DHL92) v3.5.1	cumeB564
Csa7G043690	Watermelon (Charleston Gray)	cuwcgB537
Csa7G043690	Watermelon (Charleston Gray)	cuwcgB546
Csa7G043690	Watermelon (Charleston Gray)	cuwcgB549
Csa7G043690	Watermelon (Charleston Gray)	cuwcgB553
Csa7G043690	Watermelon (97103) v1	cuwmB593
Csa7G043690	Watermelon (97103) v1	cuwmB596
Csa7G043690	Watermelon (97103) v1	cuwmB597
Csa7G043690	Cucurbita pepo (Zucchini)	cpecuB257
Csa7G043690	Cucurbita pepo (Zucchini)	cpecuB298
Csa7G043690	Cucurbita pepo (Zucchini)	cpecuB526
Csa7G043690	Cucurbita pepo (Zucchini)	cpecuB690
Csa7G043690	Cucurbita pepo (Zucchini)	cpecuB765
Csa7G043690	Bottle gourd (USVL1VR-Ls)	culsiB488
Csa7G043690	Bottle gourd (USVL1VR-Ls)	culsiB494
Csa7G043690	Bottle gourd (USVL1VR-Ls)	culsiB502
Csa7G043690	Cucumber (Gy14) v2	cgybcuB085
Csa7G043690	Cucumber (Gy14) v2	cgybcuB289
Csa7G043690	Cucumber (Gy14) v2	cgybcuB324
Csa7G043690	Melon (DHL92) v3.6.1	cumedB497
Csa7G043690	Melon (DHL92) v3.6.1	cumedB509
Csa7G043690	Melon (DHL92) v3.6.1	cumedB541