Csa7G033320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G033320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 1850723 .. 1851318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATTTGAGGTCTACAAATTGTTGGAAGGGATTAGATGAACAAATGTTGAATCTGAATTTACATTCATTCTTGTATGTATAACATTGTATTCATCAACGTCTTAATTGGGTATTCAAAAATCACAACCCTGCTCCATTCTTCAATTTCTTGTTCCATTCAATCGAATTCTGATGCTATCCCCTACGCTTTCACATTCCCTCCAACCATTTCTCCCTCCCAACCTTCATTTTCCTCTTCAAAACTGCGGGACCGAACGAGAAGCAAACCAACTCCACGCTCTCTCGATCAAAACAGCCTCCTTGAATCACCCTTCAGTGTCTTCTCGTCTTTTGGCTCTTTATGCAGATCCCAGAATCAACAATCTTCAATATGCTCACTCCCTTTTCGACTGGATTCAAGAACCCACTTTGGTTTCTTGGAATTTACTCATCAAGTGCTACATCGAGAACCAACGTTCAAATGATGCCATTGCGTTGTTCTGCAAATTGCTTTGTGATTTCGTGCCTGATTCTTTTACATTGCCTTGTGTTCTAAAGGGTTGTGCTCGATTGGGTGCATTACAGGAAGGGAAACAGATTCATGGCTTGGTATTGA

mRNA sequence

ATGTATAACATTGTATTCATCAACGTCTTAATTGGGTATTCAAAAATCACAACCCTGCTCCATTCTTCAATTTCTTGTTCCATTCAATCGAATTCTGATGCTATCCCCTACGCTTTCACATTCCCTCCAACCATTTCTCCCTCCCAACCTTCATTTTCCTCTTCAAAACTGCGGGACCGAACGAGAAGCAAACCAACTCCACGCTCTCTCGATCAAAACAGCCTCCTTGAATCACCCTTCAGTGTCTTCTCGTCTTTTGGCTCTTTATGCAGATCCCAGAATCAACAATCTTCAATATGCTCACTCCCTTTTCGACTGGATTCAAGAACCCACTTTGGTTTCTTGGAATTTACTCATCAAGTGCTACATCGAGAACCAACGGTTGTGCTCGATTGGGTGCATTACAGGAAGGGAAACAGATTCATGGCTTGGTATTGA

Coding sequence (CDS)

ATGTATAACATTGTATTCATCAACGTCTTAATTGGGTATTCAAAAATCACAACCCTGCTCCATTCTTCAATTTCTTGTTCCATTCAATCGAATTCTGATGCTATCCCCTACGCTTTCACATTCCCTCCAACCATTTCTCCCTCCCAACCTTCATTTTCCTCTTCAAAACTGCGGGACCGAACGAGAAGCAAACCAACTCCACGCTCTCTCGATCAAAACAGCCTCCTTGAATCACCCTTCAGTGTCTTCTCGTCTTTTGGCTCTTTATGCAGATCCCAGAATCAACAATCTTCAATATGCTCACTCCCTTTTCGACTGGATTCAAGAACCCACTTTGGTTTCTTGGAATTTACTCATCAAGTGCTACATCGAGAACCAACGGTTGTGCTCGATTGGGTGCATTACAGGAAGGGAAACAGATTCATGGCTTGGTATTGA

Protein sequence

MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDRTRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQVLHREPTVVLDWVHYRKGNRFMAWY*

Homology

[Close]

BLAST of Csa7G033320 vs. TrEMBL
Match: A0A0A0K363_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033320 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.4e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60
           MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR
Sbjct: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60

Query: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120
           TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ
Sbjct: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120

Query: 121 VLHREPTVVLDWVHYRKGNRFMAWY 146
           VLHREPTVVLDWVHYRKGNRFMAWY
Sbjct: 121 VLHREPTVVLDWVHYRKGNRFMAWY 145

[Close]

BLAST of Csa7G033320 vs. NCBI nr
Match: gi|700188191|gb|KGN43424.1| (hypothetical protein Csa_7G033320 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 6.3e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60
           MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR
Sbjct: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60

Query: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120
           TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ
Sbjct: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120

Query: 121 VLHREPTVVLDWVHYRKGNRFMAWY 146
           VLHREPTVVLDWVHYRKGNRFMAWY
Sbjct: 121 VLHREPTVVLDWVHYRKGNRFMAWY 145

The following BLAST results are available for this feature:

BLAST of Csa7G033320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K363_CUCSA	4.4e-78	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033320 PE=4 SV=1	[more]

BLAST of Csa7G033320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188191\|gb\|KGN43424.1\|	6.3e-78	100.00	hypothetical protein Csa_7G033320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G033320.1	Csa7G033320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G033320	Bottle gourd (USVL1VR-Ls)	culsiB488
Csa7G033320	Bottle gourd (USVL1VR-Ls)	culsiB494
Csa7G033320	Cucumber (Gy14) v2	cgybcuB291
Csa7G033320	Cucumber (Gy14) v2	cgybcuB324
Csa7G033320	Melon (DHL92) v3.6.1	cumedB496
Csa7G033320	Melon (DHL92) v3.6.1	cumedB509
Csa7G033320	Silver-seed gourd	carcuB0228
Csa7G033320	Silver-seed gourd	carcuB0384
Csa7G033320	Silver-seed gourd	carcuB1081
Csa7G033320	Watermelon (97103) v2	cuwmbB529
Csa7G033320	Wax gourd	cuwgoB670
Csa7G033320	Wax gourd	cuwgoB679
Csa7G033320	Cucumber (Chinese Long) v2	cucuB171
Csa7G033320	Cucumber (Gy14) v1	cgycuB111
Csa7G033320	Cucumber (Gy14) v1	cgycuB156
Csa7G033320	Cucurbita maxima (Rimu)	cmacuB153
Csa7G033320	Cucurbita maxima (Rimu)	cmacuB527
Csa7G033320	Cucurbita maxima (Rimu)	cmacuB576
Csa7G033320	Cucurbita moschata (Rifu)	cmocuB132
Csa7G033320	Cucurbita moschata (Rifu)	cmocuB518
Csa7G033320	Cucurbita moschata (Rifu)	cmocuB565
Csa7G033320	Melon (DHL92) v3.5.1	cumeB530
Csa7G033320	Watermelon (Charleston Gray)	cuwcgB546
Csa7G033320	Watermelon (97103) v1	cuwmB604
Csa7G033320	Cucurbita pepo (Zucchini)	cpecuB257
Csa7G033320	Cucurbita pepo (Zucchini)	cpecuB298
Csa7G033320	Cucurbita pepo (Zucchini)	cpecuB690