Csa7G023420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G023420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 1211716 .. 1212966 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCAAGCATCTTTGTATAATCGAGGCAGTAGCATCCGTTTTGTTTGCTGATCTCGAAAATGGTGAACCTGATCTTCTTCTGCGTAGGACAAGCTTGTCCCTTTATACATGCAACCGTGAGAAAATCTTCTTCTTCCCAATGCAGTCATTGAGTTTTCTGTTTCAGAGATATCTAAGGATGCTCGTGCTGTGTTTCCCACCTCCAGGTTTTTTCCTCTTTACTTGCTTGCTCAATGCGCCTCTATTACAATTTGTCGATTATGAACCATTAGAATGTGTTGATGTAGAACCATACAGTTCACTTTCTCATTTTTCAACCTCCATATTTGACAAAATTTCATTAGGACAACCTTCCATAATCCTTGGAACCTTCCTTGATTCAGGGAAGGGCTTTTCTTGTGCCATATGAAGAGAAAGGGAAAGCAAAACTCTTTTCTTTTTTGTGATTCGAGTAATCTACTTACATTTCAACTAATCTTAGCATATTCGATGAAAATAGAAAAATTGCATTAGATAACAAAAAAAGTTTAGAAAAAAAACTAATTAGTAATATCAAATGATTATTTGAGAGTTATTGGAGGACTATTAGAAGTATCGTGCTATTAGAGGGTTGTCAACTTTTAACTTGGCCACTTTTGCAATTTATCAATTTAGAAAATGTGGTGACATCAGTTCTATTATCGTAAATTTTTTTAACTGATTCATGAATGAAATAATGGTAAATCTGCTGCCATTTTGACCACCGGATGGAACCACAGGAGGACGTTCTATATGATGACTTCATATTCAATTTATTCACATCATGATTTTGCTCTCTTTTCTACTGCATGTTGAGCTTCTCTCTCCTGAGGAGAGCTTTCTTCTATTTCTATGTTGTTTTGTATATCCTTTCGAGTTCTTAAACTTCTCACCTCCCACTGTGTTTCCATCTGCTTCACTCCTTATGAATATGTATCTCTCTAGATATTTGTTGCATGCATCTACTTCTTTTGGTCTGTCGTTGATGTTAATCACCACGATGGCCATAAATTTGCTTATTAAGATAACTAATGCATGCCCCTTCAATGATATGATATGAAATAGATTCCACGTTAAAACAAACCAATGGAGACTATCTTCCAACTTCTAATCAATCCAAGGCCCTATCTGCAATCTCAGCCATTTTTGAGATACTAGTGATTTGGTTTGCGTCACTCTTGAGCACCAATACCTACTAGCATATCTGGACTACGTCACCTACCAAAAA

mRNA sequence

ATGCAAAGCAAGCATCTTTGTATAATCGAGGCAGTAGCATCCGTTTTGTTTGCTGATCTCGAAAATGGTGAACCTGATCTTCTTCTGCGTAGGACAAGCTTGTCCCTTTATACATGCAACCGTGAGAAAATCTTCTTCTTCCCAATGCAGTCATTGAGTTTTCTGTTTCAGAGATATCTAAGGATGCTCGTGCTGTGTTTCCCACCTCCAGATTCCACGTTAAAACAAACCAATGGAGACTATCTTCCAACTTCTAATCAATCCAAGGCCCTATCTGCAATCTCAGCCATTTTTGAGATACTAGTGATTTGGTTTGCGTCACTCTTGAGCACCAATACCTACTAG

Coding sequence (CDS)

ATGCAAAGCAAGCATCTTTGTATAATCGAGGCAGTAGCATCCGTTTTGTTTGCTGATCTCGAAAATGGTGAACCTGATCTTCTTCTGCGTAGGACAAGCTTGTCCCTTTATACATGCAACCGTGAGAAAATCTTCTTCTTCCCAATGCAGTCATTGAGTTTTCTGTTTCAGAGATATCTAAGGATGCTCGTGCTGTGTTTCCCACCTCCAGATTCCACGTTAAAACAAACCAATGGAGACTATCTTCCAACTTCTAATCAATCCAAGGCCCTATCTGCAATCTCAGCCATTTTTGAGATACTAGTGATTTGGTTTGCGTCACTCTTGAGCACCAATACCTACTAG

Protein sequence

MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYLRMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY*
Homology
[Close]
BLAST of Csa7G023420 vs. TrEMBL
Match: A0A0A0K4V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023420 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.4e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYL 60
           MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYL
Sbjct: 1   MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYL 60

Query: 61  RMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY 115
           RMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY
Sbjct: 61  RMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY 114

[Close]
BLAST of Csa7G023420 vs. NCBI nr
Match: gi|700188084|gb|KGN43317.1| (hypothetical protein Csa_7G023420 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 6.3e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYL 60
           MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYL
Sbjct: 1   MQSKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSFLFQRYL 60

Query: 61  RMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY 115
           RMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY
Sbjct: 61  RMLVLCFPPPDSTLKQTNGDYLPTSNQSKALSAISAIFEILVIWFASLLSTNTY 114

The following BLAST results are available for this feature:
BLAST of Csa7G023420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4V1_CUCSA4.4e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023420 PE=4 SV=1[more]
BLAST of Csa7G023420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188084|gb|KGN43317.1|6.3e-57100.00hypothetical protein Csa_7G023420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU137891cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G023420.1Csa7G023420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU137891CU137891transcribed_cluster