Csa7G019880 (gene) Cucumber (Chinese Long) v2

NameCsa7G019880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionExpansin-like protein; contains IPR007117 (Expansin, cellulose-binding-like domain)
LocationChr7 : 1150625 .. 1150855 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAAACTATGGAGCTATTTGGGATACAAATAAAGTTCCAGAAGGAGCGATAAAGCTAGTGGTGATTGTAGTTTCAGGTTACAAAAATGGAAGAGGGATAATGATAAATTATGCACTTCCTGCTGATTGGAAAACTGGAGAGATTTATGATACTGGAATTCAAATCAAAGATATCGCTACTGAAGCTTGCAATCCTTGGAGATGTGGTGACCAACCATGGAATTAA

mRNA sequence

ATGAGAAGAAACTATGGAGCTATTTGGGATACAAATAAAGTTCCAGAAGGAGCGATAAAGCTAGTGGTGATTGTAGTTTCAGGTTACAAAAATGGAAGAGGGATAATGATAAATTATGCACTTCCTGCTGATTGGAAAACTGGAGAGATTTATGATACTGGAATTCAAATCAAAGATATCGCTACTGAAGCTTGCAATCCTTGGAGATGTGGTGACCAACCATGGAATTAA

Coding sequence (CDS)

ATGAGAAGAAACTATGGAGCTATTTGGGATACAAATAAAGTTCCAGAAGGAGCGATAAAGCTAGTGGTGATTGTAGTTTCAGGTTACAAAAATGGAAGAGGGATAATGATAAATTATGCACTTCCTGCTGATTGGAAAACTGGAGAGATTTATGATACTGGAATTCAAATCAAAGATATCGCTACTGAAGCTTGCAATCCTTGGAGATGTGGTGACCAACCATGGAATTAA

Protein sequence

MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDIATEACNPWRCGDQPWN*
BLAST of Csa7G019880 vs. Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.8e-14
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M R++GA+W T+KVP GA++   +V +GY +G+ +     LPA+W+ G+ YD G+QI DI
Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGY-DGKMVWSQRVLPANWEAGKSYDAGVQITDI 252

Query: 61  ATEACNPWRCGDQPWN 77
           A E C+P  C D  WN
Sbjct: 253 AQEGCDP--CDDHIWN 265

BLAST of Csa7G019880 vs. Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M R++GA+W T+KVP GAI+   +V  GY +G+ I     LP++W+ G+IYD G+QI DI
Sbjct: 193 MTRSHGAVWVTDKVPTGAIQFRFVVTGGY-DGKMIWSQSVLPSNWEAGKIYDAGVQITDI 252

Query: 61  ATEACNPWRCGDQPWN 77
           A E C+P  C    WN
Sbjct: 253 AQEGCDP--CDAHIWN 265

BLAST of Csa7G019880 vs. Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-12
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M R++GA+W T+KVP GA++    V  GY +G+ +     LPA+W +G IYD G+QI DI
Sbjct: 192 MSRSHGAVWATDKVPTGALQFKFTVTGGY-DGKTVWSKRVLPANWNSGRIYDAGVQITDI 251

Query: 61  ATEACNPWRCGDQPWN 77
           A E C+   CG   WN
Sbjct: 252 AQEGCD--TCG-HIWN 263

BLAST of Csa7G019880 vs. Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-09
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMIN-YALPADWKTGEIYDTGIQIKD 60
           M R+YG  W T + P G ++  V+V  GY +G+ +  +   LP  W  G +YD G+QI D
Sbjct: 202 MTRDYGPAWSTAQAPAGPLQFRVVVTGGY-DGKWVWADGEVLPRRWTAGRVYDAGVQIAD 261

Query: 61  IATEACNPWRCGDQPW 76
           +A E C P  C  Q W
Sbjct: 262 VAQEGCYP--CDTQEW 274

BLAST of Csa7G019880 vs. Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINY-ALPADWKTGEIYDTGIQIKD 60
           M R +G  W     P G +++ ++V  GY +G+ +  +   LP  W+ GE+YDTG+QI D
Sbjct: 206 MTREHGPSWSMANAPPGPLQMRLVVTGGY-DGKWVWADREVLPRRWRAGEVYDTGVQITD 265

Query: 61  IATEACNPWRCGDQPW 76
           IA E C P  C    W
Sbjct: 266 IAQEGCFP--CDTHEW 278

BLAST of Csa7G019880 vs. TrEMBL
Match: A0A0A0K1H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019880 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
          MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI
Sbjct: 1  MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60

Query: 61 ATEACNPWRCGDQPWN 77
          ATEACNPWRCGDQPWN
Sbjct: 61 ATEACNPWRCGDQPWN 76

BLAST of Csa7G019880 vs. TrEMBL
Match: A0A0A0K645_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019860 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-19
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 1  MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
          M+R+YGA+W+T+ VPEGA++L ++V SGY +G  +     LPA W+ G IYDTG+QI DI
Sbjct: 17 MKRSYGAVWETDNVPEGALQLRMVVTSGY-DGNLVWAKSVLPATWRAGGIYDTGVQINDI 76

Query: 61 ATEACNPWRCGDQPW 76
          A E+C PW+CGD PW
Sbjct: 77 AKESCPPWQCGDNPW 90

BLAST of Csa7G019880 vs. TrEMBL
Match: A0A0A0K2Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M+RNYG IWD N VP+G ++L ++V S Y NG+ I     LP+DWK GEIYDTG+QI DI
Sbjct: 165 MKRNYGGIWDINGVPKGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIYDTGVQINDI 224

Query: 61  ATEACNPWRC-GDQPW 76
           A E C PW+C GD  W
Sbjct: 225 AYEYCPPWQCGGDGQW 240

BLAST of Csa7G019880 vs. TrEMBL
Match: A0A0A0K1G6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019830 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           +RRNYGA+WDT+KVP+GA+++ +   SGY +G+ +   Y LP DWK G IYDTG+QI DI
Sbjct: 148 LRRNYGAVWDTSKVPKGALQMRMAFTSGY-DGKWVWAEYVLPVDWKVGAIYDTGVQIYDI 207

Query: 61  ATEACNPWRCGDQPW 76
           A E+C   +CGD+PW
Sbjct: 208 AKESCPTSQCGDKPW 221

BLAST of Csa7G019880 vs. TrEMBL
Match: A0A0A0LXL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G637440 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-18
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M RN+GAIW    V EGA+KL ++V SGY N + I   Y +PADWK G IYDTGIQIKD 
Sbjct: 46  MIRNFGAIWYIPNVVEGALKLKMMVASGYNNNKWISTKYGIPADWKNGNIYDTGIQIKDH 105

Query: 61  ATEACNPWRCGDQPW 76
             E C P +CGD+PW
Sbjct: 106 ILENCPPNKCGDKPW 120

BLAST of Csa7G019880 vs. TAIR10
Match: AT4G38400.1 (AT4G38400.1 expansin-like A2)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-15
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M R++GA+W T+KVP GA++   +V +GY +G+ +     LPA+W+ G+ YD G+QI DI
Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGY-DGKMVWSQRVLPANWEAGKSYDAGVQITDI 252

Query: 61  ATEACNPWRCGDQPWN 77
           A E C+P  C D  WN
Sbjct: 253 AQEGCDP--CDDHIWN 265

BLAST of Csa7G019880 vs. TAIR10
Match: AT3G45970.1 (AT3G45970.1 expansin-like A1)

HSP 1 Score: 76.3 bits (186), Expect = 9.5e-15
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M R++GA+W T+KVP GAI+   +V  GY +G+ I     LP++W+ G+IYD G+QI DI
Sbjct: 193 MTRSHGAVWVTDKVPTGAIQFRFVVTGGY-DGKMIWSQSVLPSNWEAGKIYDAGVQITDI 252

Query: 61  ATEACNPWRCGDQPWN 77
           A E C+P  C    WN
Sbjct: 253 AQEGCDP--CDAHIWN 265

BLAST of Csa7G019880 vs. TAIR10
Match: AT3G45960.2 (AT3G45960.2 expansin-like A3)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-13
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M R++GA+W T+KVP GA++    V  GY +G+ +     LPA+W +G IYD G+QI DI
Sbjct: 192 MSRSHGAVWATDKVPTGALQFKFTVTGGY-DGKTVWSKRVLPANWNSGRIYDAGVQITDI 251

Query: 61  ATEACNPWRCGDQPWN 77
           A E C+   CG   WN
Sbjct: 252 AQEGCD--TCG-HIWN 263

BLAST of Csa7G019880 vs. NCBI nr
Match: gi|449470768|ref|XP_004153088.1| (PREDICTED: expansin-like A1 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI
Sbjct: 189 MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 248

Query: 61  ATEACNPWRCGDQPWN 77
           ATEACNPWRCGDQPWN
Sbjct: 249 ATEACNPWRCGDQPWN 264

BLAST of Csa7G019880 vs. NCBI nr
Match: gi|700188075|gb|KGN43308.1| (hypothetical protein Csa_7G019880 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
          MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI
Sbjct: 1  MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60

Query: 61 ATEACNPWRCGDQPWN 77
          ATEACNPWRCGDQPWN
Sbjct: 61 ATEACNPWRCGDQPWN 76

BLAST of Csa7G019880 vs. NCBI nr
Match: gi|659094112|ref|XP_008447890.1| (PREDICTED: expansin-like A2 isoform X1 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 9.8e-38
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M+RNYGAIWDTNKVPEGAIK+VVIVVSGYKNGRGIMINYALPADWK GEIYDTGIQIKDI
Sbjct: 189 MKRNYGAIWDTNKVPEGAIKMVVIVVSGYKNGRGIMINYALPADWKNGEIYDTGIQIKDI 248

Query: 61  ATEACNPWRCGDQPWN 77
           ATEACNPWRCGDQPWN
Sbjct: 249 ATEACNPWRCGDQPWN 264

BLAST of Csa7G019880 vs. NCBI nr
Match: gi|659094114|ref|XP_008447891.1| (PREDICTED: expansin-like A2 isoform X2 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 9.8e-38
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           M+RNYGAIWDTNKVPEGAIK+VVIVVSGYKNGRGIMINYALPADWK GEIYDTGIQIKDI
Sbjct: 138 MKRNYGAIWDTNKVPEGAIKMVVIVVSGYKNGRGIMINYALPADWKNGEIYDTGIQIKDI 197

Query: 61  ATEACNPWRCGDQPWN 77
           ATEACNPWRCGDQPWN
Sbjct: 198 ATEACNPWRCGDQPWN 213

BLAST of Csa7G019880 vs. NCBI nr
Match: gi|659094529|ref|XP_008448110.1| (PREDICTED: expansin-like A1 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-22
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1

Query: 1   MRRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMINYALPADWKTGEIYDTGIQIKDI 60
           ++RNYGAIWDT+KVPEGA++L ++V SGY N   I  NY +PADWK+GE YDTGIQI++I
Sbjct: 250 LKRNYGAIWDTSKVPEGALQLRLVVTSGYDNENWIWTNYEIPADWKSGETYDTGIQIEEI 309

Query: 61  ATEACNPWRCGDQPW 76
           A E+C+P  CGD+ W
Sbjct: 310 AKESCSPRECGDRIW 324

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EXLA2_ARATH5.8e-1446.05Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1[more]
EXLA1_ARATH1.7e-1347.37Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1[more]
EXLA3_ARATH5.4e-1246.05Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1[more]
EXLA2_ORYSJ1.9e-0939.47Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1[more]
EXLA1_ORYSJ1.2e-0838.16Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K1H0_CUCSA4.7e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019880 PE=4 SV=1[more]
A0A0A0K645_CUCSA4.2e-1956.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019860 PE=4 SV=1[more]
A0A0A0K2Q2_CUCSA1.2e-1857.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1[more]
A0A0A0K1G6_CUCSA1.2e-1856.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019830 PE=3 SV=1[more]
A0A0A0LXL8_CUCSA6.0e-1858.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G637440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G38400.13.3e-1546.05 expansin-like A2[more]
AT3G45970.19.5e-1547.37 expansin-like A1[more]
AT3G45960.23.1e-1346.05 expansin-like A3[more]
Match NameE-valueIdentityDescription
gi|449470768|ref|XP_004153088.1|6.8e-39100.00PREDICTED: expansin-like A1 [Cucumis sativus][more]
gi|700188075|gb|KGN43308.1|6.8e-39100.00hypothetical protein Csa_7G019880 [Cucumis sativus][more]
gi|659094112|ref|XP_008447890.1|9.8e-3896.05PREDICTED: expansin-like A2 isoform X1 [Cucumis melo][more]
gi|659094114|ref|XP_008447891.1|9.8e-3896.05PREDICTED: expansin-like A2 isoform X2 [Cucumis melo][more]
gi|659094529|ref|XP_008448110.1|7.5e-2262.67PREDICTED: expansin-like A1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007117Expansin_CBD
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G019880.1Csa7G019880.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007117Expansin, cellulose-binding-like domainGENE3DG3DSA:2.60.40.760coord: 1..57
score: 2.
IPR007117Expansin, cellulose-binding-like domainPROFILEPS50843EXPANSIN_CBDcoord: 1..53
score: 11
IPR007117Expansin, cellulose-binding-like domainunknownSSF49590PHL pollen allergencoord: 1..53
score: 2.7
NoneNo IPR availablePANTHERPTHR31692FAMILY NOT NAMEDcoord: 1..59
score: 3.0
NoneNo IPR availablePANTHERPTHR31692:SF4EXPANSIN-LIKE A1-RELATEDcoord: 1..59
score: 3.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G019880MELO3C013290Melon (DHL92) v3.5.1cumeB531
The following gene(s) are paralogous to this gene:

None