Csa7G012420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G012420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 749220 .. 749470 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGTTCGCCACGTGTCGACATGGAGATTTGAGTTTGTACTTGCGTGGATGCGGTGGCATGGTCCGAACCGACCAAACGGGCAGTTGGGCCCCGGTTTTTGGAGCCGGGTGGCACGTGCACCCCACGCTTTTTTTCGTTTGGAAAAGTTAATAGCTTTCGTTTATCTTTTCTTTTCTTTTCCTTCTTTTTTCTATATATGTAGGGCCCACGCGTTGTGTGGTGTGGGTCCCGTTTTCAGTGATTAG

mRNA sequence

ATGGCGATGTTCGCCACGTGTCGACATGGAGATTTGAGTTTGTACTTGCGTGGATGCGGTGGCATGGTCCGAACCGACCAAACGGGCAGTTGGGCCCCGGTTTTTGGAGCCGGGGCCCACGCGTTGTGTGGTGTGGGTCCCGTTTTCAGTGATTAG

Coding sequence (CDS)

ATGGCGATGTTCGCCACGTGTCGACATGGAGATTTGAGTTTGTACTTGCGTGGATGCGGTGGCATGGTCCGAACCGACCAAACGGGCAGTTGGGCCCCGGTTTTTGGAGCCGGGGCCCACGCGTTGTGTGGTGTGGGTCCCGTTTTCAGTGATTAG

Protein sequence

MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD*
Homology
[Close]
BLAST of Csa7G012420 vs. TrEMBL
Match: A0A0A0K1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G012420 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.2e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD 52
          MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD
Sbjct: 1  MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD 51

[Close]
BLAST of Csa7G012420 vs. NCBI nr
Match: gi|700188020|gb|KGN43253.1| (hypothetical protein Csa_7G012420 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD 52
          MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD
Sbjct: 1  MAMFATCRHGDLSLYLRGCGGMVRTDQTGSWAPVFGAGAHALCGVGPVFSD 51

The following BLAST results are available for this feature:
BLAST of Csa7G012420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1B0_CUCSA7.2e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G012420 PE=4 SV=1[more]
BLAST of Csa7G012420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188020|gb|KGN43253.1|1.0e-22100.00hypothetical protein Csa_7G012420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G012420.1Csa7G012420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G012420CSPI07G00980Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G012420Cucumber (Gy14) v1cgycuB331
Csa7G012420Cucumber (Gy14) v1cgycuB518
Csa7G012420Cucurbita maxima (Rimu)cmacuB151
Csa7G012420Cucurbita maxima (Rimu)cmacuB527
Csa7G012420Cucurbita maxima (Rimu)cmacuB573
Csa7G012420Cucurbita maxima (Rimu)cmacuB642
Csa7G012420Cucurbita moschata (Rifu)cmocuB132
Csa7G012420Cucurbita moschata (Rifu)cmocuB518
Csa7G012420Cucurbita moschata (Rifu)cmocuB561
Csa7G012420Cucurbita moschata (Rifu)cmocuB631
Csa7G012420Melon (DHL92) v3.5.1cumeB515
Csa7G012420Melon (DHL92) v3.5.1cumeB531
Csa7G012420Watermelon (Charleston Gray)cuwcgB540
Csa7G012420Watermelon (Charleston Gray)cuwcgB546
Csa7G012420Watermelon (97103) v1cuwmB577
Csa7G012420Watermelon (97103) v1cuwmB599
Csa7G012420Watermelon (97103) v1cuwmB604
Csa7G012420Cucurbita pepo (Zucchini)cpecuB257
Csa7G012420Cucurbita pepo (Zucchini)cpecuB299
Csa7G012420Cucurbita pepo (Zucchini)cpecuB690
Csa7G012420Bottle gourd (USVL1VR-Ls)culsiB489
Csa7G012420Bottle gourd (USVL1VR-Ls)culsiB494
Csa7G012420Cucumber (Gy14) v2cgybcuB086
Csa7G012420Cucumber (Gy14) v2cgybcuB324
Csa7G012420Melon (DHL92) v3.6.1cumedB495
Csa7G012420Melon (DHL92) v3.6.1cumedB510
Csa7G012420Silver-seed gourdcarcuB0159
Csa7G012420Silver-seed gourdcarcuB0342
Csa7G012420Silver-seed gourdcarcuB0382
Csa7G012420Silver-seed gourdcarcuB0828
Csa7G012420Silver-seed gourdcarcuB1035
Csa7G012420Watermelon (97103) v2cuwmbB522
Csa7G012420Watermelon (97103) v2cuwmbB529
Csa7G012420Wax gourdcuwgoB670
Csa7G012420Wax gourdcuwgoB681
Csa7G012420Cucumber (Chinese Long) v2cucuB077