Csa6G526460 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTAAAGGGAAACACGAAAGAGGGAAAAGAGTGATCCTCAATTTTGGCGAACCGGCAGAATGGGAAAAAATTTAGTCCCTCACTGGCGTCTACTCCGTCGAGTTCTTGACGACAATCGACTCCGAGCTCCATTTTGTCGCAACTATTCTACCCTCCGTTGCTCTGGAACACTTCTTGGAAGCTCGTCGTCTTCGTTGTCTTCGTTCTCCAAGTTGCTCTTCACCTCCTCCGGTTCCTCCCTTTGTCACGCGCCGGACTTTCATTTCCCAAGTGTGCATTGCCATCACTGTCGATCTCTATGCTCAGCGTCAGGTTAGCATTTCTATTTGTTTTCTTCGGTACTCAACGTTCACTGCTCGATAAACGAACCAATTGACGTAGGTCTTTTATTTATTTGTTATTATTATTAAACCACCATAAATATTTCTTGTTCTCTGATATTTCCTGCGAATTGACTTGTTTCTGGTATGGATAAATTGCGATCTTAAAATTTTTCCTCAAATAAGTACCGAGAAACCGTTGTATTTATTCTTGCCATTTCGTTTCTAGCACAATTATTTAAAGTAGTTATCGTTAGGTTGGTTTCTTGATAATATGGGGTTCCAAGCCCATCATTAGAGCGTCAGTCTCTAGATGGTGCCAAGCCCAATAGCATGTTTGATAGTATGAGTTCCATCTCAAAAAAATTGGCAATGAGAGGAAGGAGTAGCCCATCCATATTATATGCTGTGAATCTCCTCCTTGTTTTTTAGAACGTGGACTCTTAACATCTCAAACATTGGTGTATGCTCTTTTCGTTTTTCATTCCTTTTGGAGGTTTTTGGGATTTGAATACTGCTATTCTTTACACTTCGGCTGAAATTAAGTGAGAAACGGTTCTTCTCTATCAGGCATTTGGTGTGGATAACATTACTTCTTTGTCAGTGACCTTATAACTTGCTATGAGTGATGATTTAGTAACGTGATTTCAGATCCTTCGAACATTATCTTGGTAAAGTCTGAAAATCTATTAAAGGAGTCACTAAGCAAAGCACGAGGTATACACCTTTAGCAATATCATTTTGGTCAATAAATTTCGTACTTTGCCTTTTTATGATGCTTAATACTGTCGGATTTTTTTCCTGGCCAAAAACATATCAGAGGAAGCTTTGCCGGCAATTTTCTACTTCACAGCTGCCTGGTGTGGCCCTTGTGAGTTCCAAACCAGTATTACGTACATTCAATTCAATTTGTTGTTTATTGTTATTATTTTTTTCTACACAAACATTTGAACTAAACTATAGTTTTCCTGGAGTTGTTTGATGCATTATAATTTGTATGAACTCTCAACCTGTTTTCTTTCTATATCTGCAGGCAGATTATTAGCTCCCGTGATCAAAGATTTGAGTAAGACCTATCCTGAGGTGACAACATATAAAATTGACATCGATCAGGTTGGTACTCAATGTTGATTGTTTCACTTTCTTGAGGCATTAAATCGACCAAAAGTACAGGGGTTGAAATCCCACCCCATCTTCGCATATTGTTGAATTTAAAAAGGGGGAAAGAAAGAAAAAGAATGAAAGAGAATAAAGGATCAGCATTCCTTAAATTAGGCAAAATTCTTTGGAATCATTACTCAAATGACTGTCAAGGTTTGACTGTCAATGTTGGATTTGTTTGTACTTTGTTACTGATAATATGATATATAATTAAATTTACCTTCACCAATTAGCTTAAGTTTTTGGGTTAATTGGTAATTTAAGATGATATCAAAGTGGTGGCTTTGGGAGGTTTTATGTTGGAGCTCCTACAATGTTATTTACTCCTCTATTAAAATTAATTTTTACTTGTTCAGCCTTTTTAAATATTTCAAGTCTACAAATGAGGGAGAGTGTTAGTGGTGTATAATTAAATTTAACTTCACTGTTGGCTTAAGCTTTTTAAGTTCCATAATCTTGTGGAATAAGGTTCAACTAATTGTTAACAGTGAGTGACGACTTTGAGAAAAGGGATTTGTAAGTTAGCAATAATGTATTTTGCACAAGGGGAAGTCTTTCTTTGGGCCCTATTACATGAGAACATCAAACAATTGTTCAAATTGAAGGGTCGGACTCCATTGTAAGTTTGTAACTGTATCTGCAAAGGGGCACATATGGAACAAAACAGTCAGGGTAATAGCACCTTCTGTATTGTGAACTTGAAAGGAGTTTGGTATTTTTGCAATGCCGGTTAAGTGAAGGATTAAAATATATAATCTTTGTAGATCAATGCATGTTGTGGTTCAGTGTGAACGGTTTTGTTAGAGAGTAAGAGGAGGTTTCTGAGGATTCATATTGGGTCTTTTAGTTAGAAAGGACATCGGTTTATTTCTAGCTTCTAGATGAAGTTCCTAATCAAAGGGTGTGAGCGTGTATGTATTTTTTTTAATAAATTATTATTATTATAAATAGAAAAGATGTATTTTAAAATTTGAAAGCATTCTCCCATTTTTGTCAATGCTAGAGAAGCCTATTTTAGAATACTTTATGCCTTGTAAAATATTGAATCTTTTGCGGACTTCATTTCCTGTGGTTATTGCTTTATGCTTTCACGCTTTACTGTACTGTCTTTATCATCTCTTGCACTATAAATGGGTCATATTGAATATTGGTATTCCTTTTACAGGAAGGCCTCGAAAGGACTTTGAACGACTTAAATATTACCTCTGTGGTAAGAGTCTCAACTCTTGTAATTTACTACAGCCTTGTTATTTGTTTTGTGAATAACTCAAGAGCTCAAGCATTTCTAATTTCGTGCCTAATTTCAACCAAGGTTTACTGATTGCATTCCACAATTTGATCTATCCGTTTACGTCTAATTTTGCTATATGATTTAATCTTGAGAGGACAAACCAATCAGATTATTTTTCTCAAGGTAATTAACTTTGTTTCTGCATTGCTTGCATTTGTCAGTTCTAACAGGTGGTAAGTGAGTACATATTTTCACTCCACTTAGAACTTTTAGATCACATTTATGACCGAGTTGAACAAGATCTATTCTATAGATTGTACAACTTATACTCGAGTTCTTAGAATTGTTGGATGACATTTTAGCTTTGCTTTGTTAGTTTTATCATTTATTATATACTTGGTTTCGTTCCACTTTGTTTAAGTGAAAATGAGAGGGGAGATCGGGGAAAAACCTTCAGTCACATTGGCCTTATTTGTTTGTCTTCGAAACTTACGAACAAACACTCTTATTTTCTTATACATTTCCCCATAGCAACATTTCATCAGCTCATGTGATTTTCCTTGACTATGATGAATATGAATAGTGAATGTGGAGTGTCCAGTAATTTTAATTTTAGGTTGTTTTAAAGCGCCTCTCATTATGAACGCAGTTTTATATTAAATCCAAAAAGGTTATCGTTCAATCGACCATAAAAACTTGTCAGAATTCATTTTGTTATATTTATTTGTGTAGTAGATCAATTTATATCTCATACGCATATTTTTTGTGTTTGGCAAACAGCCAACACTTCATTTCTTTCAGGATGGCAAAGAGGCTGGTAAAATTGTGGGTGCTGATGTCGCAGGCATTAAACATATGATGGAGAAGGTTTACAAAAAATGACTATTTTGCTTTATCCCATTACATAGCAGGTTGTTTACGACTTGATGACAAGTAGATTCTGAAATTCACTGTTGGTATTTAAATTTAACAGTGTTACGAAATTTGATAACCTTCATCATAATGTGATGACCGATAAAAAGTTGTAAACAAGTTGTTCTTTCGTGCGATGATGAGAATCCTTTTGCCGAAAATGTTTAACGAGAGAATTGATACAGAATTTTTGTGGAGTATGAAGATTTGCAATTTGATAGTTATTTAAGGCAAATTTGAGAGTTAGAGACACGG ATGGGAAAAAATTTAGTCCCTCACTGGCGTCTACTCCGTCGAGTTCTTGACGACAATCGACTCCGAGCTCCATTTTGTCGCAACTATTCTACCCTCCGTTGCTCTGGAACACTTCTTGGAAGCTCGTCGTCTTCGTTGTCTTCGTTCTCCAAGTTGCTCTTCACCTCCTCCGGTTCCTCCCTTTGTCACGCGCCGGACTTTCATTTCCCAAGTGTGCATTGCCATCACTGTCGATCTCTATGCTCAGCGTCAGATCCTTCGAACATTATCTTGGTAAAGTCTGAAAATCTATTAAAGGAGTCACTAAGCAAAGCACGAGAGGAAGCTTTGCCGGCAATTTTCTACTTCACAGCTGCCTGGTGTGGCCCTTGCAGATTATTAGCTCCCGTGATCAAAGATTTGAGTAAGACCTATCCTGAGGTGACAACATATAAAATTGACATCGATCAGGAAGGCCTCGAAAGGACTTTGAACGACTTAAATATTACCTCTGTGCCAACACTTCATTTCTTTCAGGATGGCAAAGAGGCTGGTAAAATTGTGGGTGCTGATGTCGCAGGCATTAAACATATGATGGAGAAGGTTTACAAAAAATGA ATGGGAAAAAATTTAGTCCCTCACTGGCGTCTACTCCGTCGAGTTCTTGACGACAATCGACTCCGAGCTCCATTTTGTCGCAACTATTCTACCCTCCGTTGCTCTGGAACACTTCTTGGAAGCTCGTCGTCTTCGTTGTCTTCGTTCTCCAAGTTGCTCTTCACCTCCTCCGGTTCCTCCCTTTGTCACGCGCCGGACTTTCATTTCCCAAGTGTGCATTGCCATCACTGTCGATCTCTATGCTCAGCGTCAGATCCTTCGAACATTATCTTGGTAAAGTCTGAAAATCTATTAAAGGAGTCACTAAGCAAAGCACGAGAGGAAGCTTTGCCGGCAATTTTCTACTTCACAGCTGCCTGGTGTGGCCCTTGCAGATTATTAGCTCCCGTGATCAAAGATTTGAGTAAGACCTATCCTGAGGTGACAACATATAAAATTGACATCGATCAGGAAGGCCTCGAAAGGACTTTGAACGACTTAAATATTACCTCTGTGCCAACACTTCATTTCTTTCAGGATGGCAAAGAGGCTGGTAAAATTGTGGGTGCTGATGTCGCAGGCATTAAACATATGATGGAGAAGGTTTACAAAAAATGA MGKNLVPHWRLLRRVLDDNRLRAPFCRNYSTLRCSGTLLGSSSSSLSSFSKLLFTSSGSSLCHAPDFHFPSVHCHHCRSLCSASDPSNIILVKSENLLKESLSKAREEALPAIFYFTAAWCGPCRLLAPVIKDLSKTYPEVTTYKIDIDQEGLERTLNDLNITSVPTLHFFQDGKEAGKIVGADVAGIKHMMEKVYKK*
BLAST of Csa6G526460 vs. Swiss-Prot
Match: TRXO1_ARATH (Thioredoxin O1, mitochondrial OS=Arabidopsis thaliana GN=At2g35010 PE=2 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 2.9e-41 Identity = 91/200 (45.50%), Postives = 133/200 (66.50%), Query Frame = 1
BLAST of Csa6G526460 vs. Swiss-Prot
Match: TRXO2_ARATH (Thioredoxin O2, mitochondrial OS=Arabidopsis thaliana GN=At1g31020 PE=2 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.7e-33 Identity = 68/142 (47.89%), Postives = 100/142 (70.42%), Query Frame = 1
BLAST of Csa6G526460 vs. Swiss-Prot
Match: TRXO_ORYSJ (Thioredoxin O, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0665900 PE=2 SV=2) HSP 1 Score: 121.7 bits (304), Expect = 9.0e-27 Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 1
BLAST of Csa6G526460 vs. Swiss-Prot
Match: TDX_ORYSJ (TPR repeat-containing thioredoxin TDX OS=Oryza sativa subsp. japonica GN=Os09g0401200 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.7e-15 Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
BLAST of Csa6G526460 vs. Swiss-Prot
Match: TDX_ARATH (TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 6.7e-14 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 1
BLAST of Csa6G526460 vs. TrEMBL
Match: A0A0A0KMC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526460 PE=4 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 1.6e-110 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
BLAST of Csa6G526460 vs. TrEMBL
Match: E5GCL6_CUCME (Thioredoxin OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 5.6e-92 Identity = 172/198 (86.87%), Postives = 180/198 (90.91%), Query Frame = 1
BLAST of Csa6G526460 vs. TrEMBL
Match: D7T9N8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01370 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.9e-40 Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 1
BLAST of Csa6G526460 vs. TrEMBL
Match: I1KRI6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G087100 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.9e-39 Identity = 90/198 (45.45%), Postives = 126/198 (63.64%), Query Frame = 1
BLAST of Csa6G526460 vs. TrEMBL
Match: C6T1X0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39 Identity = 90/198 (45.45%), Postives = 126/198 (63.64%), Query Frame = 1
BLAST of Csa6G526460 vs. TAIR10
Match: AT2G35010.1 (AT2G35010.1 thioredoxin O1) HSP 1 Score: 169.9 bits (429), Expect = 1.6e-42 Identity = 91/200 (45.50%), Postives = 133/200 (66.50%), Query Frame = 1
BLAST of Csa6G526460 vs. TAIR10
Match: AT1G31020.1 (AT1G31020.1 thioredoxin O2) HSP 1 Score: 144.1 bits (362), Expect = 9.6e-35 Identity = 68/142 (47.89%), Postives = 100/142 (70.42%), Query Frame = 1
BLAST of Csa6G526460 vs. TAIR10
Match: AT3G17880.1 (AT3G17880.1 tetraticopeptide domain-containing thioredoxin) HSP 1 Score: 79.0 bits (193), Expect = 3.8e-15 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 1
BLAST of Csa6G526460 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1) HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14 Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 1
BLAST of Csa6G526460 vs. TAIR10
Match: AT1G69880.1 (AT1G69880.1 thioredoxin H-type 8) HSP 1 Score: 65.9 bits (159), Expect = 3.3e-11 Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = 1
BLAST of Csa6G526460 vs. NCBI nr
Match: gi|449433503|ref|XP_004134537.1| (PREDICTED: thioredoxin O2, mitochondrial-like [Cucumis sativus]) HSP 1 Score: 406.8 bits (1044), Expect = 2.2e-110 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
BLAST of Csa6G526460 vs. NCBI nr
Match: gi|659077973|ref|XP_008439481.1| (PREDICTED: thioredoxin O2, mitochondrial-like [Cucumis melo]) HSP 1 Score: 345.1 bits (884), Expect = 8.0e-92 Identity = 172/198 (86.87%), Postives = 180/198 (90.91%), Query Frame = 1
BLAST of Csa6G526460 vs. NCBI nr
Match: gi|297738007|emb|CBI27208.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40 Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 1
BLAST of Csa6G526460 vs. NCBI nr
Match: gi|225423633|ref|XP_002275152.1| (PREDICTED: thioredoxin O2, mitochondrial [Vitis vinifera]) HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40 Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 1
BLAST of Csa6G526460 vs. NCBI nr
Match: gi|947093810|gb|KRH42395.1| (hypothetical protein GLYMA_08G087100 [Glycine max]) HSP 1 Score: 170.6 bits (431), Expect = 2.7e-39 Identity = 90/198 (45.45%), Postives = 126/198 (63.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|