Csa6G502720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G502720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 25356164 .. 25358134 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTTAAACGGTATGGTGGATAAAGCTGAAATTTCTGCCACCGCGGCTAGAAAAAGGTAGAATCGCTGCCGCTGCCGAGCTCGGTGTTAACTTCTTTTGAAAAGACGTTAAAATTCAACGAAGTATACTCTCAAAAAGGTCAGAATGACTTCTAATAAAGCTGAAGATGCATTATGGTTGTCTGTCAGAATGTGGTGCCGCATGGTAAAGTTGAAGCATCTTTCATTTTTCTTGAAGCCAAACCCCAAATTTCTCAAACTCTACCCAGCTTGTTTTCATGCTTATCATGATGATAATAGTTTTGAAAAAGAATCATCCCCGCCAAAAAAAAAAAATTCAAGTAGCTTGTGATCTATTATGAGCGGGAGTTTGAATGGAAAATAGATTGGGAGAGACGCTGTGGAGGCCTTGGGTTTATGGCGAATTTTAGGTTCTAGATGTATACGCTGACTTCATGTTTCAAGTAAGCTTTCTTTCCCATTATTATTTGTGTATGTTGAGCCTGTAACATTGAATCTGAATAAATGAATAAGTCTGATTCGAGGAAGATGAGCTAATGCAACAACTATTACCCAGTTTAAAATTTCCACATCTTTCATTTTGATCAGGGAGATCAATGATTTAAATAGAGTGAAAAAACAATAGTGAGGATTTAGAAGTTTAAGTTATGTAATGTTGGTTTTTTTGGGATTGTAAAACACTCTTCATTGTCCCCAATGATATAGTATGGAGAACATTGCTTTTTGTTTTTGCAGCCAGTACTAAAATGGGAGAAACGCCATGAGTGGAGGACATTCAAAAGCTATTCGTTTCAAGATCATCTTAGAGTAAAATTCATTCATGTAATTAGAAAAGGTACTTAATTCTTCCGTTTAATTCCGATGAATTTTGTTATCTAATTAACTTTTTTATATATGCTATTATTATTATTATTTGCATTTTTTTTCCGAGTTCAACCATATATGATACGTGTGTTGGGGGTTGGGGGATATTAACATCTTGGTCAAGAACATATGCCTCTGGGTTAGATTATCACTGTTCTTATTATAAAATAATTAATACTATTCGTTTGAATGATACTTTACGTAAAAGACACTGGTTTCAGAACATACCGCGTATAAGACATGTGAGGAGCTGTAGCCTTTTATTGCATTGAACATTAAGGACAGAAGAACATATCTTTTTCCACAATTTTCCACCAAAATATATTCTTGTATTCAGAACTGGACAAAATTTAAGAGCTTCTTTCTTATCAATTTTAACTGTCTACGCTCCTAACATTGCCCGCATGTCTGGGCTCACCTACTAACTCCAGCCAGAAATTTCACACATGACCTCTCTCTCTCTCTCACGGACAGAGCCAAGTTACCATTTCAGATAATACAATTCCCAAAGGTCCGAAGTCAATTTTAAGACTTTGCTATGAAATGTATTTCTACGATGCTGAAGTTTTAGACGTGGTGTTGGTATTTTGCGTACCTTATCCATAATGATATTTGCCATGGAGTGTGAACTTTGTTACTTTCCATTTTAATTAATAAATTTGAGTGTATAAGTTTAAGTCTAAGGTTGAAAAGTTGAAGTTCATGTAATTACTAATTTGTGTTGAGTTACAGAAATTTTGAGTGTAATTTGATTTATAGGGTTGTAAATTGTTGAAGTTACCAAATATAGGTTTGTTTTCTATATAGCTCAACTATCGTCAACTTCTATTCATTCACCCACCCACATATCATTATGAAAAGAAAACTATAGATTAACAAATTTGTAGGTTTAAAGGAATAAATTTAAAGTCCTGGAAAAAAAACCAAATTTATAAATTGAACATATTTGATTTCTGAAATTTCATTATACGAATCCATAATTTAAAGCGTAGACGTACCCCCACCTAATTTACTGAAAATTTAAATTATAACTCCAGGGTTAAAATGTCATATTCGTCCTTTTTTTTTTTTTTTTCAGGTTCAGTAG

mRNA sequence

ATGTTTCAACCAGTACTAAAATGGGAGAAACGCCATGAGTGGAGGACATTCAAAAGCTATTCGTTTCAAGATCATCTTAGAGTAAAATTCATTCATAGCCAAGTTACCATTTCAGATAATACAATTCCCAAAGGTCCGAAGTCAATTTTAAGACTTTGCTATGAAATGTATTTCTACGATGCTGAAGTTTTAGACGTGGTGTTGGTTCAGTAG

Coding sequence (CDS)

ATGTTTCAACCAGTACTAAAATGGGAGAAACGCCATGAGTGGAGGACATTCAAAAGCTATTCGTTTCAAGATCATCTTAGAGTAAAATTCATTCATAGCCAAGTTACCATTTCAGATAATACAATTCCCAAAGGTCCGAAGTCAATTTTAAGACTTTGCTATGAAATGTATTTCTACGATGCTGAAGTTTTAGACGTGGTGTTGGTTCAGTAG

Protein sequence

MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYDAEVLDVVLVQ*
Homology
[Close]
BLAST of Csa6G502720 vs. TrEMBL
Match: A0A0A0KJ46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502720 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD 60
          MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD
Sbjct: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD 60

Query: 61 AEVLDVVLVQ 71
          AEVLDVVLVQ
Sbjct: 61 AEVLDVVLVQ 70

[Close]
BLAST of Csa6G502720 vs. NCBI nr
Match: gi|700193630|gb|KGN48834.1| (hypothetical protein Csa_6G502720 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD 60
          MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD
Sbjct: 1  MFQPVLKWEKRHEWRTFKSYSFQDHLRVKFIHSQVTISDNTIPKGPKSILRLCYEMYFYD 60

Query: 61 AEVLDVVLVQ 71
          AEVLDVVLVQ
Sbjct: 61 AEVLDVVLVQ 70

The following BLAST results are available for this feature:
BLAST of Csa6G502720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ46_CUCSA1.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502720 PE=4 SV=1[more]
BLAST of Csa6G502720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193630|gb|KGN48834.1|1.8e-33100.00hypothetical protein Csa_6G502720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G502720.1Csa6G502720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G502720CsGy6G030570Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G502720Watermelon (97103) v2cuwmbB412
Csa6G502720Watermelon (97103) v2cuwmbB464
Csa6G502720Watermelon (97103) v2cuwmbB481
Csa6G502720Watermelon (97103) v2cuwmbB503
Csa6G502720Wax gourdcuwgoB556
Csa6G502720Wax gourdcuwgoB620
Csa6G502720Cucumber (Chinese Long) v2cucuB065
Csa6G502720Cucumber (Chinese Long) v2cucuB112
Csa6G502720Cucumber (Chinese Long) v2cucuB146
Csa6G502720Cucumber (Gy14) v1cgycuB175
Csa6G502720Cucumber (Gy14) v1cgycuB484
Csa6G502720Cucurbita maxima (Rimu)cmacuB036
Csa6G502720Cucurbita maxima (Rimu)cmacuB345
Csa6G502720Cucurbita maxima (Rimu)cmacuB484
Csa6G502720Cucurbita maxima (Rimu)cmacuB681
Csa6G502720Cucurbita maxima (Rimu)cmacuB877
Csa6G502720Cucurbita moschata (Rifu)cmocuB181
Csa6G502720Cucurbita moschata (Rifu)cmocuB334
Csa6G502720Cucurbita moschata (Rifu)cmocuB474
Csa6G502720Cucurbita moschata (Rifu)cmocuB670
Csa6G502720Cucurbita moschata (Rifu)cmocuB865
Csa6G502720Melon (DHL92) v3.5.1cumeB480
Csa6G502720Melon (DHL92) v3.5.1cumeB485
Csa6G502720Melon (DHL92) v3.5.1cumeB500
Csa6G502720Melon (DHL92) v3.5.1cumeB503
Csa6G502720Watermelon (Charleston Gray)cuwcgB432
Csa6G502720Watermelon (Charleston Gray)cuwcgB473
Csa6G502720Watermelon (Charleston Gray)cuwcgB489
Csa6G502720Watermelon (Charleston Gray)cuwcgB512
Csa6G502720Watermelon (97103) v1cuwmB473
Csa6G502720Watermelon (97103) v1cuwmB483
Csa6G502720Watermelon (97103) v1cuwmB496
Csa6G502720Watermelon (97103) v1cuwmB500
Csa6G502720Cucurbita pepo (Zucchini)cpecuB085
Csa6G502720Cucurbita pepo (Zucchini)cpecuB503
Csa6G502720Cucurbita pepo (Zucchini)cpecuB585
Csa6G502720Cucurbita pepo (Zucchini)cpecuB846
Csa6G502720Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G502720Bottle gourd (USVL1VR-Ls)culsiB451
Csa6G502720Bottle gourd (USVL1VR-Ls)culsiB469
Csa6G502720Bottle gourd (USVL1VR-Ls)culsiB484
Csa6G502720Cucumber (Gy14) v2cgybcuB077
Csa6G502720Cucumber (Gy14) v2cgybcuB140
Csa6G502720Cucumber (Gy14) v2cgybcuB187
Csa6G502720Melon (DHL92) v3.6.1cumedB459
Csa6G502720Melon (DHL92) v3.6.1cumedB465
Csa6G502720Melon (DHL92) v3.6.1cumedB480
Csa6G502720Melon (DHL92) v3.6.1cumedB483
Csa6G502720Silver-seed gourdcarcuB0441
Csa6G502720Silver-seed gourdcarcuB0776
Csa6G502720Silver-seed gourdcarcuB0962
Csa6G502720Silver-seed gourdcarcuB0996
Csa6G502720Silver-seed gourdcarcuB1034