Csa6G499010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G499010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 24610843 .. 24611949 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTGCACAATTATCATTCCCTGGTAAAGGACAAGGACAACTAAACTAAGCAAATTTAATTGAGTTATAATTCTTAGTACGGCCGCTGTAACAAAGGAAGAAAAAACAAACAAAATCACGAGAAAAATATGAGAAGGCCGGCTTAGCTTCCACTCTAATCACCATTTCCGATAATAATCCCACTCTTTTCTAATCATTATTTAAAACCATACTACTACTTGGAGTAGTATTTATAAGGTATTTTCAAGAATAATAAAAACTCGTTAAAATTTATATTTAGTTTTGCTATAAATTATGAATACATTTTATAATTTTTTACTATTCCTCAGTTGTTAACTTATTATCTTTTCTACAGAGCAGCATTTACCATTATTTTATTATTTGCAAGAAAAATAATTATTTTCAATTATTTTAAAAACAATTTACATTAATAAAAATAATCTATACTGTAGACTATAATAATTAACTTCTACTAGGGAAGGCTCCAATATTATATTTTACCGTCTATCCTCAACCTTTTACGGCAAAGTTTAGTTGATGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTGCTTTCAACTGTAGCCTCATTCTCTTGCCGCTACTCATTGGTGGCTTTCCATCTTTCTCAAAAAACCAACCCTAACCGGTAAGTCTATGCTTTAAATTCTACATTCATTTTCATTTCACTTCCAAACATCTTTCACGCATTTTCATTCTGCGCGGATTTTTCTTTTTCCCTTTTCTATGATCACATCCTTCTTCTTTTGGATCTGCGATTACGACTCCTTCTACCTTCTTCTTTCGCTCTCCAACACCTGATTCTTGCACAAATATGGAAATAATAATGTCGCTCTTCCATCTCTGCAACTCCGATTCTTGATATCCTCTTTGTTCTGTGTTTCTCTTTTATTTTTTGCTATTTCTGGCTTGAATCATTCAATTGTTTGCTGGTTAGTTGGCCTCTTTACTGTTTGTTTTTACGAAACTAGAAATTTCTCTGACTGGAACTGTTTTATCTCAACTTTTTCTTGTTTTCTCTCAATTTTCTCACTGTTTCTTTTTCAGAAAGCAAGAGTAGTCATAAGAGGTTC

mRNA sequence

ATGGACTTGCACAATTATCATTCCCTGGGAAGGCTCCAATATTATATTTTACCGTCTATCCTCAACCTTTTACGGCAAAGTTTAGTTGATGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTGCTTTCAACTGTAGCCTCATTCTCTTGCCGCTACTCATTGGTGGCTTTCCATCTTTCTCAAAAAACCAACCCTAACCGAAAGCAAGAGTAG

Coding sequence (CDS)

ATGGACTTGCACAATTATCATTCCCTGGGAAGGCTCCAATATTATATTTTACCGTCTATCCTCAACCTTTTACGGCAAAGTTTAGTTGATGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTGCTTTCAACTGTAGCCTCATTCTCTTGCCGCTACTCATTGGTGGCTTTCCATCTTTCTCAAAAAACCAACCCTAACCGAAAGCAAGAGTAG

Protein sequence

MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAFHLSQKTNPNRKQE*
Homology
[Close]
BLAST of Csa6G499010 vs. TrEMBL
Match: A0A0A0KG63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499010 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAF 60
          MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAF
Sbjct: 1  MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAF 60

Query: 61 HLSQKTNPNRKQE 74
          HLSQKTNPNRKQE
Sbjct: 61 HLSQKTNPNRKQE 73

[Close]
BLAST of Csa6G499010 vs. NCBI nr
Match: gi|700193501|gb|KGN48705.1| (hypothetical protein Csa_6G499010 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAF 60
          MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAF
Sbjct: 1  MDLHNYHSLGRLQYYILPSILNLLRQSLVDELEFCFSRNGDFHLLSTVASFSCRYSLVAF 60

Query: 61 HLSQKTNPNRKQE 74
          HLSQKTNPNRKQE
Sbjct: 61 HLSQKTNPNRKQE 73

The following BLAST results are available for this feature:
BLAST of Csa6G499010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG63_CUCSA2.6e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499010 PE=4 SV=1[more]
BLAST of Csa6G499010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193501|gb|KGN48705.1|3.7e-34100.00hypothetical protein Csa_6G499010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127873cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G499010.1Csa6G499010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127873CU127873transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G499010Lsi01G008090Bottle gourd (USVL1VR-Ls)culsiB434
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G499010Cucurbita moschata (Rifu)cmocuB177
Csa6G499010Cucurbita moschata (Rifu)cmocuB184
Csa6G499010Cucurbita moschata (Rifu)cmocuB670
Csa6G499010Cucurbita moschata (Rifu)cmocuB799
Csa6G499010Cucurbita moschata (Rifu)cmocuB865
Csa6G499010Melon (DHL92) v3.5.1cumeB471
Csa6G499010Melon (DHL92) v3.5.1cumeB482
Csa6G499010Melon (DHL92) v3.5.1cumeB503
Csa6G499010Watermelon (Charleston Gray)cuwcgB431
Csa6G499010Watermelon (Charleston Gray)cuwcgB432
Csa6G499010Watermelon (Charleston Gray)cuwcgB511
Csa6G499010Watermelon (97103) v1cuwmB466
Csa6G499010Watermelon (97103) v1cuwmB472
Csa6G499010Watermelon (97103) v1cuwmB500
Csa6G499010Watermelon (97103) v1cuwmB535
Csa6G499010Cucurbita pepo (Zucchini)cpecuB085
Csa6G499010Cucurbita pepo (Zucchini)cpecuB123
Csa6G499010Cucurbita pepo (Zucchini)cpecuB503
Csa6G499010Cucurbita pepo (Zucchini)cpecuB839
Csa6G499010Cucurbita pepo (Zucchini)cpecuB845
Csa6G499010Bottle gourd (USVL1VR-Ls)culsiB477
Csa6G499010Bottle gourd (USVL1VR-Ls)culsiB455
Csa6G499010Bottle gourd (USVL1VR-Ls)culsiB483
Csa6G499010Cucumber (Gy14) v2cgybcuB081
Csa6G499010Cucumber (Gy14) v2cgybcuB147
Csa6G499010Cucumber (Gy14) v2cgybcuB281
Csa6G499010Melon (DHL92) v3.6.1cumedB462
Csa6G499010Melon (DHL92) v3.6.1cumedB453
Csa6G499010Melon (DHL92) v3.6.1cumedB483
Csa6G499010Silver-seed gourdcarcuB0063
Csa6G499010Silver-seed gourdcarcuB0441
Csa6G499010Silver-seed gourdcarcuB0659
Csa6G499010Silver-seed gourdcarcuB0776
Csa6G499010Watermelon (97103) v2cuwmbB412
Csa6G499010Watermelon (97103) v2cuwmbB424
Csa6G499010Watermelon (97103) v2cuwmbB496
Csa6G499010Watermelon (97103) v2cuwmbB502
Csa6G499010Wax gourdcuwgoB625
Csa6G499010Wax gourdcuwgoB647
Csa6G499010Cucumber (Chinese Long) v2cucuB070
Csa6G499010Cucumber (Chinese Long) v2cucuB073
Csa6G499010Cucumber (Chinese Long) v2cucuB122
Csa6G499010Cucumber (Gy14) v1cgycuB452
Csa6G499010Cucumber (Gy14) v1cgycuB121
Csa6G499010Cucumber (Gy14) v1cgycuB242
Csa6G499010Cucurbita maxima (Rimu)cmacuB192
Csa6G499010Cucurbita maxima (Rimu)cmacuB199
Csa6G499010Cucurbita maxima (Rimu)cmacuB681
Csa6G499010Cucurbita maxima (Rimu)cmacuB810
Csa6G499010Cucurbita maxima (Rimu)cmacuB877