Csa6G493320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G493320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 23763668 .. 23764717 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATATGGTGACATGTGAGGGGGAGTTGTTGAGTGTTTTGACTGGGTGTAGACCTAACAAAGCCAAAGCGTATAGGATTCAGTCCAACAACTGCTCTCTCTCTCACCTCACGCACGAGCCGTCGTTTTGGCAAAGTATGAACGCGTTGACCCTACCGTTAATCCTCTTCCTGCCGGAGCAACCGTCGCGGCATAATCAAATTTCTCCACTACTACTAAAGCAACTTCATTTCAAATTCATCAAAACCTTACCCAAATTTCCTTACGGTTTTCCCCATTCCTTATACACCTTCTCTTCCCTTTCCGGAATAAAACCCATCCAACCAATCCCAGGGAAAAGGATAGAGCTGAATTCATACGCTTAATGCTCAAACTCGGTGACTGCGACTACTAGACGCGGTTAGATTTCCCATCACTTTCCATGAAATTTTCTCTTACTTGTCTCGGAGAGATTTAAATTGTGGTTTTTTGTTTTTTCCATTAAATTTAGGGTTTTCGTTTATTTCTTTGGTATTGATTCGTTCCATCTTACTTGTCTCATCCTCGAGCTTCCGATCAATTTTATTTTTCTTTCCAACGATGCTTTTGATTGAAAGTTACAACGAATTTTCCGTAATGGACTGTTCACAATTGTTTCTTGTAAATTTCTATGTTGTAATAGATGAACCCTAGCCCTTGTAAAGAGGGAGAAAGAAGATCTGTGACATGAATTGCAATTGAAACAGATTACTAAAGTTTTAGTTAGCGGTGATTGCTTATAATCATTCCTGTTTTACATTTGTCTAGGTTCTGCAAAGAGAATTATTAAATTCGAGATCTATAGATCAAACAGGGACTTGTTCCTGCGGCTAGTTGGCTCAAGATATCCCGAGGTAGTGATGAATTTCATTATGTTAACTCTTATTTTGTAATTACTAATTGAGTTTGGCGAACGATTTCTCTTGTTCATTCCTACGTATTTTTAAAATCTTCTTATGAAGTCTGGAAATGCCGAACTGCTTTATGCATATTTAAATTGAGTTTCTCACTTGAATGGGTTGCAGTAA

mRNA sequence

ATGGGGGATATGGTGACATGTGAGGGGGAGTTGTTGAGTGTTTTGACTGGGTGTAGACCTAACAAAGCCAAAGCGTATAGGATTCAGTCCAACAACTGCTCTCTCTCTCACCTCACGCACGAGCCGTCGTTTTGGCAAAGTTCTGCAAAGAGAATTATTAAATTCGAGATCTATAGATCAAACAGGGACTTGTTCCTGCGGCTAGTTGGCTCAAGATATCCCGAGTAA

Coding sequence (CDS)

ATGGGGGATATGGTGACATGTGAGGGGGAGTTGTTGAGTGTTTTGACTGGGTGTAGACCTAACAAAGCCAAAGCGTATAGGATTCAGTCCAACAACTGCTCTCTCTCTCACCTCACGCACGAGCCGTCGTTTTGGCAAAGTTCTGCAAAGAGAATTATTAAATTCGAGATCTATAGATCAAACAGGGACTTGTTCCTGCGGCTAGTTGGCTCAAGATATCCCGAGTAA

Protein sequence

MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRSNRDLFLRLVGSRYPE*
Homology
[Close]
BLAST of Csa6G493320 vs. TrEMBL
Match: A0A0A0KGF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493320 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.3e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60
          MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS
Sbjct: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60

Query: 61 NRDLFLRLVGSRYPE 76
          NRDLFLRLVGSRYPE
Sbjct: 61 NRDLFLRLVGSRYPE 75

[Close]
BLAST of Csa6G493320 vs. NCBI nr
Match: gi|700193369|gb|KGN48573.1| (hypothetical protein Csa_6G493320 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.1e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60
          MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS
Sbjct: 1  MGDMVTCEGELLSVLTGCRPNKAKAYRIQSNNCSLSHLTHEPSFWQSSAKRIIKFEIYRS 60

Query: 61 NRDLFLRLVGSRYPE 76
          NRDLFLRLVGSRYPE
Sbjct: 61 NRDLFLRLVGSRYPE 75

The following BLAST results are available for this feature:
BLAST of Csa6G493320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGF4_CUCSA6.3e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493320 PE=4 SV=1[more]
BLAST of Csa6G493320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193369|gb|KGN48573.1|9.1e-36100.00hypothetical protein Csa_6G493320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G493320.1Csa6G493320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G493320CSPI06G28550Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G493320Cucurbita pepo (Zucchini)cpecuB085
Csa6G493320Cucurbita pepo (Zucchini)cpecuB124
Csa6G493320Cucurbita pepo (Zucchini)cpecuB229
Csa6G493320Cucurbita pepo (Zucchini)cpecuB297
Csa6G493320Cucurbita pepo (Zucchini)cpecuB468
Csa6G493320Cucurbita pepo (Zucchini)cpecuB503
Csa6G493320Cucurbita pepo (Zucchini)cpecuB763
Csa6G493320Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G493320Bottle gourd (USVL1VR-Ls)culsiB474
Csa6G493320Cucumber (Gy14) v2cgybcuB082
Csa6G493320Cucumber (Gy14) v2cgybcuB281
Csa6G493320Melon (DHL92) v3.6.1cumedB445
Csa6G493320Melon (DHL92) v3.6.1cumedB452
Csa6G493320Melon (DHL92) v3.6.1cumedB483
Csa6G493320Silver-seed gourdcarcuB0205
Csa6G493320Silver-seed gourdcarcuB0409
Csa6G493320Silver-seed gourdcarcuB0441
Csa6G493320Watermelon (97103) v2cuwmbB412
Csa6G493320Watermelon (97103) v2cuwmbB494
Csa6G493320Wax gourdcuwgoB577
Csa6G493320Wax gourdcuwgoB621
Csa6G493320Cucumber (Chinese Long) v2cucuB072
Csa6G493320Cucumber (Chinese Long) v2cucuB143
Csa6G493320Cucumber (Chinese Long) v2cucuB173
Csa6G493320Cucumber (Gy14) v1cgycuB121
Csa6G493320Cucumber (Gy14) v1cgycuB552
Csa6G493320Cucurbita maxima (Rimu)cmacuB144
Csa6G493320Cucurbita maxima (Rimu)cmacuB347
Csa6G493320Cucurbita maxima (Rimu)cmacuB560
Csa6G493320Cucurbita maxima (Rimu)cmacuB626
Csa6G493320Cucurbita maxima (Rimu)cmacuB681
Csa6G493320Cucurbita maxima (Rimu)cmacuB775
Csa6G493320Cucurbita maxima (Rimu)cmacuB809
Csa6G493320Cucurbita maxima (Rimu)cmacuB877
Csa6G493320Cucurbita moschata (Rifu)cmocuB176
Csa6G493320Cucurbita moschata (Rifu)cmocuB337
Csa6G493320Cucurbita moschata (Rifu)cmocuB548
Csa6G493320Cucurbita moschata (Rifu)cmocuB617
Csa6G493320Cucurbita moschata (Rifu)cmocuB670
Csa6G493320Cucurbita moschata (Rifu)cmocuB766
Csa6G493320Cucurbita moschata (Rifu)cmocuB801
Csa6G493320Cucurbita moschata (Rifu)cmocuB865
Csa6G493320Melon (DHL92) v3.5.1cumeB470
Csa6G493320Melon (DHL92) v3.5.1cumeB464
Csa6G493320Melon (DHL92) v3.5.1cumeB503
Csa6G493320Watermelon (Charleston Gray)cuwcgB432
Csa6G493320Watermelon (Charleston Gray)cuwcgB503
Csa6G493320Watermelon (97103) v1cuwmB461
Csa6G493320Watermelon (97103) v1cuwmB500