Csa6G488370 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G488370
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 23049790 .. 23049984 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGTTGTTGGTGTATAATGTTGAGCTGTGGATTGCAAGCAAAGGCAGCAAAGAATATGGAGAGAGTTTCTTGGGAGCCATGTGGTCAGTTAATCCAGCAAGTAGCAACCCACAAAAAGCCCTTAAGATGTATGTGGGCAACACCCTCCCCAACATCTATAGATGGGGGTGCACTGCCCCTTCACTTTAA

mRNA sequence

ATGTATGTGTTGTTGGTGTATAATGTTGAGCTGTGGATTGCAAGCAAAGGCAGCAAAGAATATGGAGAGAGTTTCTTGGGAGCCATGTGGTCAGTTAATCCAGCAAGTAGCAACCCACAAAAAGCCCTTAAGATGTATGTGGGCAACACCCTCCCCAACATCTATAGATGGGGGTGCACTGCCCCTTCACTTTAA

Coding sequence (CDS)

ATGTATGTGTTGTTGGTGTATAATGTTGAGCTGTGGATTGCAAGCAAAGGCAGCAAAGAATATGGAGAGAGTTTCTTGGGAGCCATGTGGTCAGTTAATCCAGCAAGTAGCAACCCACAAAAAGCCCTTAAGATGTATGTGGGCAACACCCTCCCCAACATCTATAGATGGGGGTGCACTGCCCCTTCACTTTAA

Protein sequence

MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCTAPSL*

Homology

[Close]

BLAST of Csa6G488370 vs. TrEMBL
Match: A0A0A0KJC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G488370 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.8e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCT 60
          MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCT
Sbjct: 1  MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCT 60

Query: 61 APSL 65
          APSL
Sbjct: 61 APSL 64

[Close]

BLAST of Csa6G488370 vs. NCBI nr
Match: gi|700193263|gb|KGN48467.1| (hypothetical protein Csa_6G488370 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 8.3e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCT 60
          MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCT
Sbjct: 1  MYVLLVYNVELWIASKGSKEYGESFLGAMWSVNPASSNPQKALKMYVGNTLPNIYRWGCT 60

Query: 61 APSL 65
          APSL
Sbjct: 61 APSL 64

The following BLAST results are available for this feature:

BLAST of Csa6G488370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJC1_CUCSA	5.8e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G488370 PE=4 SV=1	[more]

BLAST of Csa6G488370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193263\|gb\|KGN48467.1\|	8.3e-30	100.00	hypothetical protein Csa_6G488370 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G488370.1	Csa6G488370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G488370	Wax gourd	cuwgoB585
Csa6G488370	Wax gourd	cuwgoB603
Csa6G488370	Wax gourd	cuwgoB630
Csa6G488370	Cucumber (Chinese Long) v2	cucuB075
Csa6G488370	Cucumber (Chinese Long) v2	cucuB076
Csa6G488370	Cucumber (Gy14) v1	cgycuB121
Csa6G488370	Cucumber (Gy14) v1	cgycuB134
Csa6G488370	Cucumber (Gy14) v1	cgycuB329
Csa6G488370	Cucurbita maxima (Rimu)	cmacuB629
Csa6G488370	Cucurbita maxima (Rimu)	cmacuB681
Csa6G488370	Cucurbita maxima (Rimu)	cmacuB809
Csa6G488370	Cucurbita maxima (Rimu)	cmacuB877
Csa6G488370	Cucurbita moschata (Rifu)	cmocuB670
Csa6G488370	Cucurbita moschata (Rifu)	cmocuB802
Csa6G488370	Cucurbita moschata (Rifu)	cmocuB865
Csa6G488370	Melon (DHL92) v3.5.1	cumeB472
Csa6G488370	Melon (DHL92) v3.5.1	cumeB503
Csa6G488370	Watermelon (Charleston Gray)	cuwcgB420
Csa6G488370	Watermelon (Charleston Gray)	cuwcgB432
Csa6G488370	Watermelon (Charleston Gray)	cuwcgB451
Csa6G488370	Watermelon (Charleston Gray)	cuwcgB505
Csa6G488370	Watermelon (97103) v1	cuwmB448
Csa6G488370	Watermelon (97103) v1	cuwmB464
Csa6G488370	Watermelon (97103) v1	cuwmB500
Csa6G488370	Watermelon (97103) v1	cuwmB525
Csa6G488370	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G488370	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G488370	Cucurbita pepo (Zucchini)	cpecuB840
Csa6G488370	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G488370	Cucumber (Gy14) v2	cgybcuB083
Csa6G488370	Cucumber (Gy14) v2	cgybcuB281
Csa6G488370	Melon (DHL92) v3.6.1	cumedB419
Csa6G488370	Melon (DHL92) v3.6.1	cumedB454
Csa6G488370	Melon (DHL92) v3.6.1	cumedB483
Csa6G488370	Silver-seed gourd	carcuB0205
Csa6G488370	Silver-seed gourd	carcuB0441
Csa6G488370	Silver-seed gourd	carcuB0826
Csa6G488370	Silver-seed gourd	carcuB0907
Csa6G488370	Watermelon (97103) v2	cuwmbB412
Csa6G488370	Watermelon (97103) v2	cuwmbB441
Csa6G488370	Watermelon (97103) v2	cuwmbB495
Csa6G488370	Watermelon (97103) v2	cuwmbB512