Csa6G486780 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G486780
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 22604976 .. 22605728 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGGGGAAAATGCTTGTTTGTACCGCATTTTTTAAGACAGATTGGAAATGTTTTCAGCTTTTACAGAAATGGATTGGTAAAGGCTGAGAAGATGAAAACTTGGACCTCGATTCAATCTGGACAGGAAAATCTTATGCAGTTGGGTAACATGCACCGTTTAGTTGCTTAAGGGCAGCCATAGGGAGGCGGATTACAAGTCTTCAAAAATTCTTTTGGCTGCAGTACTAGGATCACGCAGTATGGTCTCGGGGATTGTTTTTGTTTCAAGCAAATCAGCAAATGCTTCCTCTTTCTTTCTAAATTTCACAGATTTTCAAACGTTGGATCCAAACGTTGGATTGGGATCCCAAATCAGTGGTCTCAGCACTCAATTGCTCGAATTGAAGTCGGGTATTCTGCAAGCCTTTCCTTCAATCACATCATCTTAACCAAATCACTTTAATCAAAGACAATCAAACTTCTTCATTGGGGTAAACTTTGTTTCACTCCAATGGTAGTCTATGTGATCAACGCTACTGATTTTCCAGTGATGAAGAGGATTCCCATATTTTCCAGTCATCAACACTTCAGATTTTCCAATGAGGTAAACTTGTTCATTTGTTAGAACTTAGAAGCACACCATGCATGTTTGAGGATAGTTCAGTGGTGACTGGTTCTAGAAAAACTTGTGTTTACTGTTCAGATTAATCCTGCTGCTACAGGGAAGTGGATTCACAAACACACTTCTGATCTCTCATCTTCAGGCTAA

mRNA sequence

ATGTCTTGGGGAAAATGCTTGTTTGTACCGCATTTTTTAAGACAGATTGGAAATGTTTTCAGCTTTTACAGAAATGGATTGGTAAAGGCTGAGAAGATGAAAACTTGGACCTCGATTCAATCTGGACAGGAAAATCTTATGCAGTTGGTACTAGGATCACGCAGTATGGTCTCGGGGATTGTTTTTGTTTCAAGCAAATCAGCAAATGCTTCCTCTTTCTTTCTAAATTTCACAGATTTTCAAACGTTGGATCCAAACGTTGGATTGGGATCCCAAATCAGTGGTCTCAGCACTCAATTGCTCGAATTGAAGTCGGTCTATGTGATCAACGCTACTGATTTTCCAGTGATGAAGAGGATTCCCATATTTTCCAGTCATCAACACTTCAGATTTTCCAATGAGATTAATCCTGCTGCTACAGGGAAGTGGATTCACAAACACACTTCTGATCTCTCATCTTCAGGCTAA

Coding sequence (CDS)

ATGTCTTGGGGAAAATGCTTGTTTGTACCGCATTTTTTAAGACAGATTGGAAATGTTTTCAGCTTTTACAGAAATGGATTGGTAAAGGCTGAGAAGATGAAAACTTGGACCTCGATTCAATCTGGACAGGAAAATCTTATGCAGTTGGTACTAGGATCACGCAGTATGGTCTCGGGGATTGTTTTTGTTTCAAGCAAATCAGCAAATGCTTCCTCTTTCTTTCTAAATTTCACAGATTTTCAAACGTTGGATCCAAACGTTGGATTGGGATCCCAAATCAGTGGTCTCAGCACTCAATTGCTCGAATTGAAGTCGGTCTATGTGATCAACGCTACTGATTTTCCAGTGATGAAGAGGATTCCCATATTTTCCAGTCATCAACACTTCAGATTTTCCAATGAGATTAATCCTGCTGCTACAGGGAAGTGGATTCACAAACACACTTCTGATCTCTCATCTTCAGGCTAA

Protein sequence

MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGIVFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRIPIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG*

Homology

[Close]

BLAST of Csa6G486780 vs. TrEMBL
Match: A0A0A0KFB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486780 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGI 60
           MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGI
Sbjct: 1   MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGI 60

Query: 61  VFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRI 120
           VFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRI
Sbjct: 61  VFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRI 120

Query: 121 PIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG 156
           PIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG
Sbjct: 121 PIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG 155

[Close]

BLAST of Csa6G486780 vs. NCBI nr
Match: gi|700193201|gb|KGN48405.1| (hypothetical protein Csa_6G486780 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGI 60
           MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGI
Sbjct: 1   MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTWTSIQSGQENLMQLVLGSRSMVSGI 60

Query: 61  VFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRI 120
           VFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRI
Sbjct: 61  VFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRI 120

Query: 121 PIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG 156
           PIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG
Sbjct: 121 PIFSSHQHFRFSNEINPAATGKWIHKHTSDLSSSG 155

The following BLAST results are available for this feature:

BLAST of Csa6G486780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFB7_CUCSA	2.4e-82	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486780 PE=4 SV=1	[more]

BLAST of Csa6G486780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193201\|gb\|KGN48405.1\|	3.5e-82	100.00	hypothetical protein Csa_6G486780 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G486780.1	Csa6G486780.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G486780	Cucurbita maxima (Rimu)	cmacuB627
Csa6G486780	Cucurbita maxima (Rimu)	cmacuB681
Csa6G486780	Cucurbita maxima (Rimu)	cmacuB877
Csa6G486780	Cucurbita moschata (Rifu)	cmocuB619
Csa6G486780	Cucurbita moschata (Rifu)	cmocuB670
Csa6G486780	Cucurbita moschata (Rifu)	cmocuB865
Csa6G486780	Melon (DHL92) v3.5.1	cumeB508
Csa6G486780	Watermelon (Charleston Gray)	cuwcgB432
Csa6G486780	Watermelon (Charleston Gray)	cuwcgB447
Csa6G486780	Watermelon (97103) v1	cuwmB502
Csa6G486780	Watermelon (97103) v1	cuwmB531
Csa6G486780	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G486780	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G486780	Cucurbita pepo (Zucchini)	cpecuB764
Csa6G486780	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G486780	Cucumber (Gy14) v2	cgybcuB084
Csa6G486780	Cucumber (Gy14) v2	cgybcuB281
Csa6G486780	Melon (DHL92) v3.6.1	cumedB487
Csa6G486780	Silver-seed gourd	carcuB0267
Csa6G486780	Silver-seed gourd	carcuB0826
Csa6G486780	Watermelon (97103) v2	cuwmbB412
Csa6G486780	Watermelon (97103) v2	cuwmbB437
Csa6G486780	Wax gourd	cuwgoB615
Csa6G486780	Wax gourd	cuwgoB622
Csa6G486780	Cucumber (Chinese Long) v2	cucuB074
Csa6G486780	Cucumber (Gy14) v1	cgycuB121
Csa6G486780	Cucumber (Gy14) v1	cgycuB359