Csa6G452760 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G452760
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 21651939 .. 21653811 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACTTCTAGGGTTTATCTATTTCTTACAGCCCCCATGTCTACTGCATCTTCTAGGGTTTGTTTCTTATCGTCGTATTTTTATTCTGCATTTGTATTCGTCGTGCACTTCCATTTCTAATTTCTTTGCGCAGCCCTTAAGATCGCCTTCCTCTGCGGGAAATGGAAGCGTTTCGAGTCATAGCTGCGCTACAGCGACACTCTTTTCGGAGAATTCCACTAGGGTTTTCCTGCTGGAATTCTCTGCGTTTCCCACTTGATCTTGATCTCGAGGCATTTGTTATCCGCCTTTGGATCTCCTACTATGTCTGAAACTCAAACGATTTGGCTTTTCTGCTCTCTCGTTTGTTTGTTTTCAGACAAGTTGAGTTTCAGATCCTTATGGATGTTGTCTATGCCTTACTCATCGATGGGTTACATTTCGTATTCGATTTTTGTGATGTTTGTATTTGATTTTGTTTTTGTTCATGTTTTGTTCTTTTACAAGCGCTTGACAATATGGATATTAACTCATGGCAAGGGTGATGATTCAATTAGATGTGTGAAAGGATTAATCCTTTCTGAACTTAACTTTTTGAGGCATTTTCATTTGTCTGACTTGCCCGAGTTCTACCTTTTCACTTAGTTCGTTGCTTTTGTCCTGCTTGCATTGGTTTTTTATTTGGATCTTGAGTTTTTTTATTCGATATACCATAGTGTTTTCTTTTGTCCAACTAGTCTGAAGATAATCATACTTTTGGTTACCCCGATTGCTACTGTTTATATAAAGAAAGTCATAATCAGCAAGCCATTTATCTTCTGATTAATGTTTTCATTGTGTAGTTTCTGATGTTTCTATACAAGCTGGTTTTGTTAATTTTGTAAACCCGTTTCCATAAATTCAACTTGATATGTTTTCTGATTTGTATGTTTGCAAGCATTTTGATGGTGCCAAATTTATTAGATATATGATGTTACCATCTTGCTCGAATTGTTCACTCTGCCTAATGCCTGTGATGGTGTTAAATATACTTTGAGATGACTTTCTGTGAAAAATTTTTGATCTGAGGCACCATGGCTTTTTTGTTCCTTCCTATCTGTTTAAGTATTTATGTTCTTTTCTCAATGGTTTGACTATGTCTTTTTACATTTGATTTCGTTTTGTTTTTCATTCTTTTAATTCATTTCCTAAATTTATTTATTGTATTGTGCAAGTGATGATAAAATAGACAGGGACATCAGCACTCTGCAAGAGGATGATGATTTGTCAATGGGAATCTCTCTGATGCACTATACTATTTAATTTAATTTTATTAGATTTGGCCAATGATGCATATCTATTGCACGTATTATCAGAGTAAGAGATGATGATACTAATGAATTGTCACTACCTCTGAGGCCAATTATCAGTTTAATTCCTCCCTGTTATTGTCGAAGTCAGCTTACAACTTCTGAAATAAGGATGAAAAATTAGTATTGGATCAATAAAGTTGTATCTAAATGGATGATGGAATCCATGTGATTAGTATTTGGGATTGGCATCTAGTTTGTTTGGTTTGTGGAGTTAGTTAATATTAAGTCCATCGAGCCGAGCCTGATGATTGTTTTCAAGAACGGAGATTCGAATGGTGCTTTTTGTAGAAGCTTGACTTTATGTTAGGCTCCAACAGCACTGTATGTGACAGATCCTACAGAACTTCAAATGAAGGCTTTGTTAAATCTTTTCCACCAACTGTTGTAGAAAAGAAGAAATAAAAGTTCTTGCATGTTTCTAATTCTGGAATTTACATTAGCAATGTCTTATCCCTAAAACTAGTTCTATAATTCATGGTTTCAAGCACAATTTTATTAAGTAGTTTCACAAGCTCAGATGTATAAGATATAATGATAATACTC

mRNA sequence

ATGTCTGAAACTCAAACGATTTGGCTTTTCTGCTCTCTCGTTTGTTTGTTTTCAGACAAGTTGAGTTTCAGATCCTTATGGATGTTGTCTATGCCTTACTCATCGATGGGTTACATTTCGTATTCGATTTTTGTGATGTTTGTATTTGATTTTGTTTTTGTTCATGTTTTGTTCTTTTACAAGCGCTTGACAATATGGATATTAACTCATGGCAAGGGTGATGATTCAATTAGATGTGTGAAAGGATTAATCCTTTCTGAACTTAACTTTTTGAGGCATTTTCATTTGTCTGACTTGCCCGAGTTCTACCTTTTCACTTAG

Coding sequence (CDS)

ATGTCTGAAACTCAAACGATTTGGCTTTTCTGCTCTCTCGTTTGTTTGTTTTCAGACAAGTTGAGTTTCAGATCCTTATGGATGTTGTCTATGCCTTACTCATCGATGGGTTACATTTCGTATTCGATTTTTGTGATGTTTGTATTTGATTTTGTTTTTGTTCATGTTTTGTTCTTTTACAAGCGCTTGACAATATGGATATTAACTCATGGCAAGGGTGATGATTCAATTAGATGTGTGAAAGGATTAATCCTTTCTGAACTTAACTTTTTGAGGCATTTTCATTTGTCTGACTTGCCCGAGTTCTACCTTTTCACTTAG

Protein sequence

MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFYKRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT*
Homology
[Close]
BLAST of Csa6G452760 vs. TrEMBL
Match: A0A0A0KEY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452760 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFY 60
           MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFY
Sbjct: 1   MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFY 60

Query: 61  KRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT 107
           KRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT
Sbjct: 61  KRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT 106

[Close]
BLAST of Csa6G452760 vs. NCBI nr
Match: gi|700193071|gb|KGN48275.1| (hypothetical protein Csa_6G452760 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 2.5e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFY 60
           MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFY
Sbjct: 1   MSETQTIWLFCSLVCLFSDKLSFRSLWMLSMPYSSMGYISYSIFVMFVFDFVFVHVLFFY 60

Query: 61  KRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT 107
           KRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT
Sbjct: 61  KRLTIWILTHGKGDDSIRCVKGLILSELNFLRHFHLSDLPEFYLFT 106

The following BLAST results are available for this feature:
BLAST of Csa6G452760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEY9_CUCSA1.7e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452760 PE=4 SV=1[more]
BLAST of Csa6G452760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193071|gb|KGN48275.1|2.5e-55100.00hypothetical protein Csa_6G452760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101607cucumber EST collection version 3.0transcribed_cluster
CU101854cucumber EST collection version 3.0transcribed_cluster
CU104874cucumber EST collection version 3.0transcribed_cluster
CU113304cucumber EST collection version 3.0transcribed_cluster
CU143686cucumber EST collection version 3.0transcribed_cluster
CU151242cucumber EST collection version 3.0transcribed_cluster
CU154278cucumber EST collection version 3.0transcribed_cluster
CU172453cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G452760.1Csa6G452760.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101607CU101607transcribed_cluster
CU151242CU151242transcribed_cluster
CU113304CU113304transcribed_cluster
CU101854CU101854transcribed_cluster
CU104874CU104874transcribed_cluster
CU143686CU143686transcribed_cluster
CU154278CU154278transcribed_cluster
CU172453CU172453transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G452760Cucsa.083520Cucumber (Gy14) v1cgycuB082
Csa6G452760CsGy6G025080Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G452760Melon (DHL92) v3.5.1cumeB484
Csa6G452760Melon (DHL92) v3.5.1cumeB508
Csa6G452760Watermelon (Charleston Gray)cuwcgB424
Csa6G452760Watermelon (Charleston Gray)cuwcgB444
Csa6G452760Watermelon (Charleston Gray)cuwcgB464
Csa6G452760Watermelon (97103) v1cuwmB452
Csa6G452760Watermelon (97103) v1cuwmB505
Csa6G452760Watermelon (97103) v1cuwmB518
Csa6G452760Cucurbita pepo (Zucchini)cpecuB085
Csa6G452760Cucurbita pepo (Zucchini)cpecuB503
Csa6G452760Cucurbita pepo (Zucchini)cpecuB624
Csa6G452760Cucurbita pepo (Zucchini)cpecuB759
Csa6G452760Cucurbita pepo (Zucchini)cpecuB876
Csa6G452760Bottle gourd (USVL1VR-Ls)culsiB421
Csa6G452760Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G452760Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G452760Cucumber (Gy14) v2cgybcuB137
Csa6G452760Melon (DHL92) v3.6.1cumedB464
Csa6G452760Melon (DHL92) v3.6.1cumedB487
Csa6G452760Silver-seed gourdcarcuB0267
Csa6G452760Silver-seed gourdcarcuB0278
Csa6G452760Silver-seed gourdcarcuB0826
Csa6G452760Silver-seed gourdcarcuB0943
Csa6G452760Watermelon (97103) v2cuwmbB418
Csa6G452760Watermelon (97103) v2cuwmbB434
Csa6G452760Watermelon (97103) v2cuwmbB455
Csa6G452760Wax gourdcuwgoB527
Csa6G452760Wax gourdcuwgoB614
Csa6G452760Wax gourdcuwgoB631
Csa6G452760Cucumber (Chinese Long) v2cucuB110
Csa6G452760Cucumber (Gy14) v1cgycuB346
Csa6G452760Cucurbita maxima (Rimu)cmacuB267
Csa6G452760Cucurbita maxima (Rimu)cmacuB641
Csa6G452760Cucurbita maxima (Rimu)cmacuB681
Csa6G452760Cucurbita maxima (Rimu)cmacuB840
Csa6G452760Cucurbita maxima (Rimu)cmacuB878
Csa6G452760Cucurbita moschata (Rifu)cmocuB253
Csa6G452760Cucurbita moschata (Rifu)cmocuB630
Csa6G452760Cucurbita moschata (Rifu)cmocuB670
Csa6G452760Cucurbita moschata (Rifu)cmocuB828
Csa6G452760Cucurbita moschata (Rifu)cmocuB865