Csa6G447080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G447080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 21043148 .. 21043465 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTTCAAAGTGTCAGAAATCTATAAAAGCAAGCATGGATCTGGTATTAGGGATTGAGAGACGGGGAAACGGAATCAAAGAAGAAAACAAAACAATAAAACGTTACCCCTGTCGTAATACAATCTCTCTCAAACTTGGTCTTCAATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

mRNA sequence

ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

Coding sequence (CDS)

ATGGATCCAAGTATCGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGTTGATCGAGCTATATGATTCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTCGAACGGCGGAAGTGGAAGATAA

Protein sequence

MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR*
Homology
[Close]
BLAST of Csa6G447080 vs. TrEMBL
Match: A0A0A0KHA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G447080 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR 57
          MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR 56

[Close]
BLAST of Csa6G447080 vs. NCBI nr
Match: gi|700192995|gb|KGN48199.1| (hypothetical protein Csa_6G447080 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR 57
          MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR 56

The following BLAST results are available for this feature:
BLAST of Csa6G447080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA6_CUCSA7.8e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G447080 PE=4 SV=1[more]
BLAST of Csa6G447080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192995|gb|KGN48199.1|1.1e-22100.00hypothetical protein Csa_6G447080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G447080.1Csa6G447080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G447080ClCG04G009440Watermelon (Charleston Gray)cuwcgB464
Csa6G447080Cp4.1LG19g03830Cucurbita pepo (Zucchini)cpecuB503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G447080Cucumber (Chinese Long) v2cucuB168
Csa6G447080Cucumber (Gy14) v1cgycuB167
Csa6G447080Cucumber (Gy14) v1cgycuB439
Csa6G447080Cucumber (Gy14) v1cgycuB542
Csa6G447080Cucurbita maxima (Rimu)cmacuB267
Csa6G447080Cucurbita maxima (Rimu)cmacuB561
Csa6G447080Cucurbita maxima (Rimu)cmacuB681
Csa6G447080Cucurbita maxima (Rimu)cmacuB840
Csa6G447080Cucurbita maxima (Rimu)cmacuB878
Csa6G447080Cucurbita moschata (Rifu)cmocuB253
Csa6G447080Cucurbita moschata (Rifu)cmocuB670
Csa6G447080Cucurbita moschata (Rifu)cmocuB828
Csa6G447080Cucurbita moschata (Rifu)cmocuB865
Csa6G447080Melon (DHL92) v3.5.1cumeB484
Csa6G447080Melon (DHL92) v3.5.1cumeB508
Csa6G447080Watermelon (Charleston Gray)cuwcgB424
Csa6G447080Watermelon (Charleston Gray)cuwcgB444
Csa6G447080Watermelon (97103) v1cuwmB452
Csa6G447080Watermelon (97103) v1cuwmB505
Csa6G447080Watermelon (97103) v1cuwmB518
Csa6G447080Cucurbita pepo (Zucchini)cpecuB085
Csa6G447080Cucurbita pepo (Zucchini)cpecuB296
Csa6G447080Cucurbita pepo (Zucchini)cpecuB624
Csa6G447080Cucurbita pepo (Zucchini)cpecuB876
Csa6G447080Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G447080Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G447080Cucumber (Gy14) v2cgybcuB137
Csa6G447080Cucumber (Gy14) v2cgybcuB281
Csa6G447080Cucumber (Gy14) v2cgybcuB284
Csa6G447080Melon (DHL92) v3.6.1cumedB411
Csa6G447080Melon (DHL92) v3.6.1cumedB464
Csa6G447080Melon (DHL92) v3.6.1cumedB487
Csa6G447080Silver-seed gourdcarcuB0181
Csa6G447080Silver-seed gourdcarcuB0267
Csa6G447080Silver-seed gourdcarcuB0278
Csa6G447080Silver-seed gourdcarcuB0678
Csa6G447080Watermelon (97103) v2cuwmbB418
Csa6G447080Watermelon (97103) v2cuwmbB434
Csa6G447080Watermelon (97103) v2cuwmbB455
Csa6G447080Wax gourdcuwgoB529
Csa6G447080Wax gourdcuwgoB614
Csa6G447080Wax gourdcuwgoB629
Csa6G447080Cucumber (Chinese Long) v2cucuB109