Csa6G446400 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G446400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription factor, putative; contains IPR005333 (Transcription factor, TCP)
LocationChr6 : 20921871 .. 20922643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCCTCTCCGGTCACCATCACGCGCCAATCCCTCCTCCCTCGCAAGTCAAATACCCCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGCCGCGTCCGTATGCCCGCCCTCTGTGCTGCTCGCATCTTTCAGTTAACGCGTGAACTTGGTCATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCGATCTCCACTGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGGTTCAGCCAGTGACGGTGGGCGGCAGTGGACAGGGGATGTTCGCTATGCCACCGCCTAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTACCGCCACATGCCGTTCACAGCGCTGTTGTTGCAGCCGTCGACGGCGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTTAGAGAATAATGGAAAATTGAAAGGATAAAAACAGACACAGATAGGAGTCTAAAATTGCAGTATGGAGATTTTTTTTACCCTTTTTTCAGCTCTTCTTCGTACTCCTTCCTCTCGTCCTGTTCATGACTGGAATTTGTAAAGGGAAGAAGAAACTGTAA

mRNA sequence

ATGGGATCCGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCCTCTCCGGTCACCATCACGCGCCAATCCCTCCTCCCTCGCAAGTCAAATACCCCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGCCGCGTCCGTATGCCCGCCCTCTGTGCTGCTCGCATCTTTCAGTTAACGCGTGAACTTGGTCATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCGATCTCCACTGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGGTTCAGCCAGTGACGGTGGGCGGCAGTGGACAGGGGATGTTCGCTATGCCACCGCCTAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTACCGCCACATGCCGTTCACAGCGCTGTTGTTGCAGCCGTCGACGGCGGAGGAGACGGAGGAGAGACAGGAGGAGGAGCTCTTCTTCGTACTCCTTCCTCTCGTCCTGTTCATGACTGGAATTTGTAAAGGGAAGAAGAAACTGTAA

Coding sequence (CDS)

ATGGGATCCGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCCTCTCCGGTCACCATCACGCGCCAATCCCTCCTCCCTCGCAAGTCAAATACCCCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGCCGCGTCCGTATGCCCGCCCTCTGTGCTGCTCGCATCTTTCAGTTAACGCGTGAACTTGGTCATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCGATCTCCACTGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGGTTCAGCCAGTGACGGTGGGCGGCAGTGGACAGGGGATGTTCGCTATGCCACCGCCTAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTACCGCCACATGCCGTTCACAGCGCTGTTGTTGCAGCCGTCGACGGCGGAGGAGACGGAGGAGAGACAGGAGGAGGAGCTCTTCTTCGTACTCCTTCCTCTCGTCCTGTTCATGACTGGAATTTGTAAAGGGAAGAAGAAACTGTAA

Protein sequence

MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL*
Homology
[Close]
BLAST of Csa6G446400 vs. Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-36
Identity = 90/153 (58.82%), Postives = 99/153 (64.71%), Query Frame = 1 

Query: 53  SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 112
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 113 TGTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYS 172
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 173 AAGNDYRHMPFTALLLQP--STAEETEERQEEE 204
              N Y HMPFTA+LL+P  +TAE   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]
BLAST of Csa6G446400 vs. Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-30
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 1 

Query: 11  PSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRV 70
           P S    SQP T    ++ +      +  +         PL  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAKK-------PPLKRASTKDRHTKVDGRGRRI 138

Query: 71  RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 130
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 131 SGRSVS 137
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]
BLAST of Csa6G446400 vs. Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-29
Identity = 67/121 (55.37%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 16  PHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPAL 75
           P S PP  S     S+++  T T++S              +KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKRS--------------TKDRHTKVDGRGRRIRMPAL 93

Query: 76  CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 135
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 136 S 137
           S
Sbjct: 154 S 139

[Close]
BLAST of Csa6G446400 vs. Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-28
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1 

Query: 22  TASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIF 81
           + S +    NS+  T+T        + TP +   SKDRHIKV+GRGRR+RMPA+CAAR+F
Sbjct: 29  SVSLTTTAPNSTTTTVTA-------AKTP-AKRPSKDRHIKVDGRGRRIRMPAICAARVF 88

Query: 82  QLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 137
           QLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 89  QLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]
BLAST of Csa6G446400 vs. Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-26
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 1 

Query: 15  DPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPA 74
           D  +   + S +++ + S P      +  P+K   P   +S+KDRH KV GRGRR+RMPA
Sbjct: 19  DSSTSSSSTSLAIISTTSEP------NSEPKKP--PPKRTSTKDRHTKVEGRGRRIRMPA 78

Query: 75  LCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRS 134
           +CAAR+FQLTRELGH+S+GETIEWLL+QAEP++IAATGTGT+P+   ++++ ++ SS  S
Sbjct: 79  MCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPAN-FTSLNISLRSSRSS 131

Query: 135 VS 137
           +S
Sbjct: 139 LS 131

[Close]
BLAST of Csa6G446400 vs. TrEMBL
Match: A0A0A0KH86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 1.8e-123
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL 226
           MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL
Sbjct: 181 MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL 225

[Close]
BLAST of Csa6G446400 vs. TrEMBL
Match: F6HR41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01600 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.1e-57
Identity = 130/210 (61.90%), Postives = 155/210 (73.81%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSS--SDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKD 60
           MGS++ LHKF SS  S+P+S    A+ +  G +S     T+  L P    T  +SSSS+D
Sbjct: 1   MGSEMNLHKFSSSEHSNPNSLTTAAASATAGGDS-----TKAELAPPPRKT--ASSSSRD 60

Query: 61  RHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPS 120
           RH KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+
Sbjct: 61  RHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA 120

Query: 121 GPISTVSSA-MASSGRSVSCRVQPVTVGGSGQ---GMFAMPPPSCRLDLCQPVGMEYSAA 180
             +S+  +A  +SS  + +C+VQP+T   SG    GMF M PPSCRLDLCQPV +E+   
Sbjct: 121 TSVSSSGTANPSSSTATTACKVQPLTSVPSGHVPTGMFTMAPPSCRLDLCQPVTLEF--P 180

Query: 181 GNDYRHMPFTALLLQPSTAEETEERQEEEL 205
           GN YRHMPFT+LLLQ  T EE EER +EE+
Sbjct: 181 GNGYRHMPFTSLLLQSGT-EEAEERHQEEV 200

[Close]
BLAST of Csa6G446400 vs. TrEMBL
Match: A0A061ETZ0_THECC (Proliferating cell nuclear antigen gene-controlling element binding factor, putative OS=Theobroma cacao GN=TCM_022197 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.1e-55
Identity = 132/217 (60.83%), Postives = 154/217 (70.97%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGS++ LHKF +++  H+   +  +SVV   S+P T   Q  LP +      SS SKDRH
Sbjct: 1   MGSEMALHKFSTAN--HNHQNSNINSVVSDESTPKT---QLALPTRKPV---SSLSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTV---- 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATG+GTV    
Sbjct: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAAH 120

Query: 121 ----PSGPISTVSSAMASSGRSVSCRVQPVTVGGSG--QGMFAM--PPPSCRLDLCQPVG 180
               P+GP  T     ++S  SVSC+V PV VG      GM+ M  PPP+CRLDLCQPVG
Sbjct: 121 EISCPAGPTMT-----SASPPSVSCQVHPVGVGSGSVVAGMYTMTAPPPNCRLDLCQPVG 180

Query: 181 MEYSAAG-NDYRHMPFTALLLQPST-AEETEERQEEE 204
            +YSA G + Y+HMPFTALLLQP+T AEE EERQ  E
Sbjct: 181 FQYSAVGRSGYQHMPFTALLLQPTTAAEEVEERQRVE 204

[Close]
BLAST of Csa6G446400 vs. TrEMBL
Match: G7IA90_MEDTR (TCP family transcription factor OS=Medicago truncatula GN=MTR_1g063870 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.0e-54
Identity = 121/206 (58.74%), Postives = 142/206 (68.93%), Query Frame = 1 

Query: 3   SDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIK 62
           S++V+H F S +   ++P TA  + V + SS          P       +S S+KDRH K
Sbjct: 4   SEVVIHTF-SQTQSETKPSTAVTTTVATTSSDPNTKLTVRRP-------ASRSTKDRHTK 63

Query: 63  VNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPIS 122
           VNGRGRRVRMP LCAARIFQLTRELGHRS+GETIEWLLR AEPSIIAATGTGTVP+GP+S
Sbjct: 64  VNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPVS 123

Query: 123 TVSSAMASSGRSVSCRVQP-VTVGGSGQGMFA----MPPPSCRLDLCQPVGMEYSAAGND 182
           T S   +SS  SVSC VQP  TVG  G G+F     M PPSCRLDL QP GM+Y  A   
Sbjct: 124 TSSPFTSSSLPSVSCHVQPATTVGPGGGGIFGMALPMQPPSCRLDLSQPAGMDYGTASR- 183

Query: 183 YRHMPFTALLLQPSTAEETEERQEEE 204
           Y HMPFT LLLQP+T  E  ++++EE
Sbjct: 184 YHHMPFTTLLLQPTTTGEENQQEDEE 200

[Close]
BLAST of Csa6G446400 vs. TrEMBL
Match: D1MJ53_PEA (Proliferating cell nuclear antigen gene-controlling element binding factor (Fragment) OS=Pisum sativum GN=PEAPCF1 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 127/209 (60.77%), Postives = 148/209 (70.81%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           M S + +H F  S        T S +V  ++S P    + S + R S T  +S S+KDRH
Sbjct: 17  MTSQLAIHTFSQSDTK-----TTSTAVTTTDSDPNL--QLSTVRRTSTT--ASRSTKDRH 76

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
            KVNGRGRRVRMP LCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 77  TKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPADP 136

Query: 121 ISTVSSAMASSGRSVSCRVQPV-TVGGSGQGMFA----MPPPSCRLDLCQPVGMEYSAAG 180
           +ST+    +SS +SVSC V PV +V    Q +FA    +  PSCRLDLCQP+GMEY AA 
Sbjct: 137 VSTIFPVSSSSVQSVSCNVHPVSSVCHGSQDVFAAGMPLQQPSCRLDLCQPIGMEY-AAE 196

Query: 181 NDYRHMPFTALLLQPSTAEETEERQEEEL 205
           N YRHMPFTALLLQP+T EE +  QEE L
Sbjct: 197 NRYRHMPFTALLLQPTTVEENQ--QEETL 213

[Close]
BLAST of Csa6G446400 vs. TAIR10
Match: AT2G37000.1 (AT2G37000.1 TCP family transcription factor )

HSP 1 Score: 154.8 bits (390), Expect = 6.2e-38
Identity = 90/153 (58.82%), Postives = 99/153 (64.71%), Query Frame = 1 

Query: 53  SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 112
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 113 TGTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYS 172
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 173 AAGNDYRHMPFTALLLQP--STAEETEERQEEE 204
              N Y HMPFTA+LL+P  +TAE   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]
BLAST of Csa6G446400 vs. TAIR10
Match: AT3G47620.1 (AT3G47620.1 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 1 

Query: 11  PSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRV 70
           P S    SQP T    ++ +      +  +         PL  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAKK-------PPLKRASTKDRHTKVDGRGRRI 138

Query: 71  RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 130
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 131 SGRSVS 137
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]
BLAST of Csa6G446400 vs. TAIR10
Match: AT1G58100.1 (AT1G58100.1 TCP family transcription factor )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 67/121 (55.37%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 16  PHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPAL 75
           P S PP  S     S+++  T T++S              +KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKRS--------------TKDRHTKVDGRGRRIRMPAL 93

Query: 76  CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 135
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 136 S 137
           S
Sbjct: 154 S 139

[Close]
BLAST of Csa6G446400 vs. TAIR10
Match: AT1G35560.1 (AT1G35560.1 TCP family transcription factor )

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-29
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1 

Query: 22  TASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIF 81
           + S +    NS+  T+T        + TP +   SKDRHIKV+GRGRR+RMPA+CAAR+F
Sbjct: 29  SVSLTTTAPNSTTTTVTA-------AKTP-AKRPSKDRHIKVDGRGRRIRMPAICAARVF 88

Query: 82  QLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 137
           QLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 89  QLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]
BLAST of Csa6G446400 vs. TAIR10
Match: AT1G69690.1 (AT1G69690.1 TCP family transcription factor )

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-28
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 1 

Query: 15  DPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPA 74
           D  +   + S +++ + S P      +  P+K   P   +S+KDRH KV GRGRR+RMPA
Sbjct: 19  DSSTSSSSTSLAIISTTSEP------NSEPKKP--PPKRTSTKDRHTKVEGRGRRIRMPA 78

Query: 75  LCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRS 134
           +CAAR+FQLTRELGH+S+GETIEWLL+QAEP++IAATGTGT+P+   ++++ ++ SS  S
Sbjct: 79  MCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPAN-FTSLNISLRSSRSS 131

Query: 135 VS 137
           +S
Sbjct: 139 LS 131

[Close]
BLAST of Csa6G446400 vs. NCBI nr
Match: gi|700192975|gb|KGN48179.1| (hypothetical protein Csa_6G446400 [Cucumis sativus])

HSP 1 Score: 449.9 bits (1156), Expect = 2.6e-123
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL 226
           MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL
Sbjct: 181 MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL 225

[Close]
BLAST of Csa6G446400 vs. NCBI nr
Match: gi|449451034|ref|XP_004143267.1| (PREDICTED: transcription factor TCP11-like [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 3.9e-111
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPSTAEETEERQEEE+F
Sbjct: 181 MPFTALLLQPSTAEETEERQEEEVF 205

[Close]
BLAST of Csa6G446400 vs. NCBI nr
Match: gi|659125012|ref|XP_008462463.1| (PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo])

HSP 1 Score: 400.2 bits (1027), Expect = 2.4e-108
Identity = 198/205 (96.59%), Postives = 202/205 (98.54%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 296 MPFTALLLQPSTGEETEERQEEEVF 320

[Close]
BLAST of Csa6G446400 vs. NCBI nr
Match: gi|1009160536|ref|XP_015898404.1| (PREDICTED: transcription factor TCP11-like [Ziziphus jujuba])

HSP 1 Score: 243.0 bits (619), Expect = 4.9e-61
Identity = 130/215 (60.47%), Postives = 158/215 (73.49%), Query Frame = 1 

Query: 5   IVLHKFPSS----SDPHSQPPTASHSVV--GSNSSPVTITRQSLLPRKSNTPLS-----S 64
           + LHKF SS    +  H Q    + +V+   + ++  T T  ++    S T LS     S
Sbjct: 1   MALHKFSSSDHHNNQSHHQTERTTTAVIPTATTTTTTTTTTTAITEPSSKTQLSLPRKAS 60

Query: 65  SSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGT 124
           SSS+DRH KVNGRGRRVRMPA+CAARIFQLTRELGHRS+GETIEWLLR AEPSIIAATG+
Sbjct: 61  SSSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGS 120

Query: 125 GTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPP----PSCRLDLCQPVGM 184
           GT+P+ P+ST S AMAS+  SV+CRVQP++   SGQ +F++ P    PSCRLDLCQPVG+
Sbjct: 121 GTLPAAPVSTPSPAMASTSASVTCRVQPISSVSSGQCLFSVGPPQAAPSCRLDLCQPVGL 180

Query: 185 EYSAAGNDYRHMPFTALLLQPSTAEETEERQEEEL 205
           EY+AA N YRHMPFTALLLQ ST+E  E +QEE L
Sbjct: 181 EYAAASNGYRHMPFTALLLQTSTSEADERQQEEAL 215

[Close]
BLAST of Csa6G446400 vs. NCBI nr
Match: gi|502121993|ref|XP_004497526.1| (PREDICTED: transcription factor TCP11 [Cicer arietinum])

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 135/209 (64.59%), Postives = 155/209 (74.16%), Query Frame = 1 

Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           M S++V+H F  S    ++P TA+ S   S  S V         ++++T  +S S+KDRH
Sbjct: 1   MTSELVIHTF--SQPQTNKPSTATASDPNSQISTV---------KRTSTTTASRSTKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
            KVNGRGRRVRMP LCAARIFQLTRELGHRS+GETIEWLLR AEPSIIAATGTGTVP+ P
Sbjct: 61  TKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAAP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPV-TVGGSGQGMFA----MPPPSCRLDLCQPVGMEYSAAG 180
           +STVS   +SS  SVSC VQPV +VG  GQGMFA     P PSCRLDLCQP GMEY+AA 
Sbjct: 121 VSTVSPVSSSSVPSVSCHVQPVSSVGPGGQGMFAAAMSQPQPSCRLDLCQPPGMEYAAA- 180

Query: 181 NDYRHMPFTALLLQPSTAEETEERQEEEL 205
           N YRHMPFTALLLQP+TAEE +  QEE L
Sbjct: 181 NGYRHMPFTALLLQPTTAEENQ--QEEAL 195

The following BLAST results are available for this feature:
BLAST of Csa6G446400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TCP11_ARATH1.1e-3658.82Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=1 SV=1[more]
TCP14_ARATH3.4e-3052.38Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1[more]
TCP8_ARATH2.2e-2955.37Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1[more]
TCP23_ARATH3.2e-2857.39Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1[more]
TCP15_ARATH1.0e-2650.82Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=1 SV=1[more]
BLAST of Csa6G446400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH86_CUCSA1.8e-123100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446400 PE=4 SV=1[more]
F6HR41_VITVI5.1e-5761.90Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01600 PE=4 SV=... [more]
A0A061ETZ0_THECC2.1e-5560.83Proliferating cell nuclear antigen gene-controlling element binding factor, puta... [more]
G7IA90_MEDTR9.0e-5458.74TCP family transcription factor OS=Medicago truncatula GN=MTR_1g063870 PE=4 SV=1[more]
D1MJ53_PEA1.2e-5360.77Proliferating cell nuclear antigen gene-controlling element binding factor (Frag... [more]
BLAST of Csa6G446400 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37000.16.2e-3858.82 TCP family transcription factor [more]
AT3G47620.11.9e-3152.38 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14[more]
AT1G58100.11.2e-3055.37 TCP family transcription factor [more]
AT1G35560.11.8e-2957.39 TCP family transcription factor [more]
AT1G69690.15.8e-2850.82 TCP family transcription factor [more]
BLAST of Csa6G446400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192975|gb|KGN48179.1|2.6e-123100.00hypothetical protein Csa_6G446400 [Cucumis sativus][more]
gi|449451034|ref|XP_004143267.1|3.9e-11199.51PREDICTED: transcription factor TCP11-like [Cucumis sativus][more]
gi|659125012|ref|XP_008462463.1|2.4e-10896.59PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo][more]
gi|1009160536|ref|XP_015898404.1|4.9e-6160.47PREDICTED: transcription factor TCP11-like [Ziziphus jujuba][more]
gi|502121993|ref|XP_004497526.1|9.2e-6064.59PREDICTED: transcription factor TCP11 [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005333Transcription_factor_TCP
IPR017887TF_TCP_subgr
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU134737cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G446400.1Csa6G446400.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU134737CU134737transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 55..169
score: 7.8
IPR017887Transcription factor TCP subgroupPROFILEPS51369TCPcoord: 56..110
score: 26
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 45..171
score: 2.8
NoneNo IPR availablePANTHERPTHR31072:SF25SUBFAMILY NOT NAMEDcoord: 45..171
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G446400Cla018312Watermelon (97103) v1cuwmB505
Csa6G446400MELO3C024459Melon (DHL92) v3.5.1cumeB508
Csa6G446400ClCG04G009230Watermelon (Charleston Gray)cuwcgB464
Csa6G446400Lsi01G013150Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G446400MELO3C024459.2Melon (DHL92) v3.6.1cumedB487
Csa6G446400Cla97C04G075950Watermelon (97103) v2cuwmbB455
Csa6G446400Bhi03G001212Wax gourdcuwgoB629
Csa6G446400CSPI06G24620Wild cucumber (PI 183967)cpicuB313
Csa6G446400Cucsa.124600Cucumber (Gy14) v1cgycuB167
Csa6G446400CmaCh07G009050Cucurbita maxima (Rimu)cmacuB878
Csa6G446400CmaCh03G012190Cucurbita maxima (Rimu)cmacuB681
Csa6G446400CmoCh03G012190Cucurbita moschata (Rifu)cmocuB670
Csa6G446400CmoCh07G009370Cucurbita moschata (Rifu)cmocuB865
Csa6G446400Cp4.1LG19g03850Cucurbita pepo (Zucchini)cpecuB503
Csa6G446400CsGy6G024030Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa6G446400Csa6G147520Cucumber (Chinese Long) v2cucuB168
The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G446400Silver-seed gourdcarcuB0181
Csa6G446400Silver-seed gourdcarcuB0267
Csa6G446400Silver-seed gourdcarcuB0278
Csa6G446400Watermelon (97103) v2cuwmbB418
Csa6G446400Watermelon (97103) v2cuwmbB434
Csa6G446400Wax gourdcuwgoB529
Csa6G446400Cucumber (Chinese Long) v2cucuB109
Csa6G446400Cucumber (Gy14) v1cgycuB439
Csa6G446400Cucumber (Gy14) v1cgycuB542
Csa6G446400Cucurbita maxima (Rimu)cmacuB267
Csa6G446400Cucurbita maxima (Rimu)cmacuB561
Csa6G446400Cucurbita maxima (Rimu)cmacuB840
Csa6G446400Cucurbita moschata (Rifu)cmocuB253
Csa6G446400Cucurbita moschata (Rifu)cmocuB828
Csa6G446400Melon (DHL92) v3.5.1cumeB484
Csa6G446400Melon (DHL92) v3.5.1cumeB490
Csa6G446400Watermelon (Charleston Gray)cuwcgB424
Csa6G446400Watermelon (Charleston Gray)cuwcgB444
Csa6G446400Watermelon (97103) v1cuwmB452
Csa6G446400Watermelon (97103) v1cuwmB518
Csa6G446400Cucurbita pepo (Zucchini)cpecuB085
Csa6G446400Cucurbita pepo (Zucchini)cpecuB296
Csa6G446400Cucurbita pepo (Zucchini)cpecuB624
Csa6G446400Cucurbita pepo (Zucchini)cpecuB876
Csa6G446400Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G446400Cucumber (Gy14) v2cgybcuB137
Csa6G446400Cucumber (Gy14) v2cgybcuB284
Csa6G446400Melon (DHL92) v3.6.1cumedB411
Csa6G446400Melon (DHL92) v3.6.1cumedB464