Csa6G429110 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G429110
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 20307567 .. 20307893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGATAAAACGCGGACCAGAATCAGTGTGGCGTGGGGTCGAAGGGGTTGTGGCGCATCCTGCTTTGGTCGTATCGAACCCGACACGGTGGCTACACGAATGGCTCGGGCGTGCAGGTGTAGATGCACCATCAATTTGGCCGGTGGGTCAAGTGGTTGGCCCATATTCTTTCGTGGAGTCAATCAGCTTCACTCCATTTTTGAGGCGTGAGAATTTAATGCCTTTATTAACCCAACACGTGAATACAATACTTGCCTTCTATTTCGAAAACGACACGCTGGAATGGAACCACCGTCCGTATTATAAGCCACAAAAATCTTAG

mRNA sequence

ATGGAGAAGATAAAACGCGGACCAGAATCAGTGTGGCGTGGGGTCGAAGGGGTTGTGGCGCATCCTGCTTTGGTCGTATCGAACCCGACACGGTGGCTACACGAATGGCTCGGGCGTGCAGGTGTAGATGCACCATCAATTTGGCCGGTGGGTCAAGTGGTTGGCCCATATTCTTTCGTGGAGTCAATCAGCTTCACTCCATTTTTGAGGCGTGAGAATTTAATGCCTTTATTAACCCAACACGTGAATACAATACTTGCCTTCTATTTCGAAAACGACACGCTGGAATGGAACCACCGTCCGTATTATAAGCCACAAAAATCTTAG

Coding sequence (CDS)

ATGGAGAAGATAAAACGCGGACCAGAATCAGTGTGGCGTGGGGTCGAAGGGGTTGTGGCGCATCCTGCTTTGGTCGTATCGAACCCGACACGGTGGCTACACGAATGGCTCGGGCGTGCAGGTGTAGATGCACCATCAATTTGGCCGGTGGGTCAAGTGGTTGGCCCATATTCTTTCGTGGAGTCAATCAGCTTCACTCCATTTTTGAGGCGTGAGAATTTAATGCCTTTATTAACCCAACACGTGAATACAATACTTGCCTTCTATTTCGAAAACGACACGCTGGAATGGAACCACCGTCCGTATTATAAGCCACAAAAATCTTAG

Protein sequence

MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFVESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS*

Homology

[Close]

BLAST of Csa6G429110 vs. TrEMBL
Match: A0A0A0KK00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429110 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.2e-58
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60
           MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV
Sbjct: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60

Query: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS 109
           ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS
Sbjct: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS 108

[Close]

BLAST of Csa6G429110 vs. NCBI nr
Match: gi|700192877|gb|KGN48081.1| (hypothetical protein Csa_6G429110 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.2e-58
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60
           MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV
Sbjct: 1   MEKIKRGPESVWRGVEGVVAHPALVVSNPTRWLHEWLGRAGVDAPSIWPVGQVVGPYSFV 60

Query: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS 109
           ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS
Sbjct: 61  ESISFTPFLRRENLMPLLTQHVNTILAFYFENDTLEWNHRPYYKPQKS 108

The following BLAST results are available for this feature:

BLAST of Csa6G429110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK00_CUCSA	2.2e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429110 PE=4 SV=1	[more]

BLAST of Csa6G429110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192877\|gb\|KGN48081.1\|	3.2e-58	100.00	hypothetical protein Csa_6G429110 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G429110.1	Csa6G429110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G429110	CSPI06G23700	Wild cucumber (PI 183967)	cpicuB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G429110	Watermelon (Charleston Gray)	cuwcgB438
Csa6G429110	Watermelon (97103) v1	cuwmB513
Csa6G429110	Cucurbita pepo (Zucchini)	cpecuB281
Csa6G429110	Cucurbita pepo (Zucchini)	cpecuB742
Csa6G429110	Bottle gourd (USVL1VR-Ls)	culsiB414
Csa6G429110	Cucumber (Gy14) v2	cgybcuB281
Csa6G429110	Melon (DHL92) v3.6.1	cumedB471
Csa6G429110	Silver-seed gourd	carcuB0553
Csa6G429110	Silver-seed gourd	carcuB0941
Csa6G429110	Watermelon (97103) v2	cuwmbB428
Csa6G429110	Wax gourd	cuwgoB596
Csa6G429110	Cucumber (Gy14) v1	cgycuB089
Csa6G429110	Cucurbita maxima (Rimu)	cmacuB562
Csa6G429110	Cucurbita maxima (Rimu)	cmacuB630
Csa6G429110	Cucurbita moschata (Rifu)	cmocuB552
Csa6G429110	Cucurbita moschata (Rifu)	cmocuB620
Csa6G429110	Melon (DHL92) v3.5.1	cumeB491