Csa6G419470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G419470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPF04305 family protein; contains IPR007402 (Protein of unknown function DUF455)
LocationChr6 : 19319618 .. 19320654 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGGTTACAGGATACGAGCAGATGAGCAATCAAGCAGATTTTGGAGTATAGTTCCACTACCAAGCGTCTCTAAAAGGGCTTGAAAACTTGGTTGTTTATTTAATTTTATTTTTTAATACAACAACTGTAAGGTGGGAATCAAACATCCAAGCTCTAGGAGGAAGGCCATGCCAAATTACCTTAAACTCACTTTAGCTAGAAACTTGTATTTATTTTATGTTTGTCTATTCCAATAAATTGTATATTATCTCGTTCTGGTTATCACTTTTCTTGTATTAAAGGCACATATTTGTATTTAATATCGCACATTGTGTAGGAGGCTAGAGGACTCGATGCTGGGCCTCGACTAGTGAAAAAATTAGTTGGCTTCGGGGATCATAGAACATCTGATATTGTAGCTAAAATTGCTGATGAAGAAGTTGCACATGTAGCTGTTGGTGTCTACTGGTTTGTCCTAGTCTGTCAGAAAATGGAACGTGCTCCATGCTCAACTTTTAAAGGTTTATATCCGTCATTACTTCAGTTTGTACTATTTCATTAAAATGATACAAGTCCTAGAGCTTGCATTACTGGATAACATCTTTGGTGGCACTAACGCAGAGTTGTTAAAAGAATACAGTGTGGAACTAAAAGGGCCTTTCAATTATTCAGCTCGAGATGAAGCTGGCCTTCCACGTGATTGGTATGAAAACTTCCCATCTAGTTTACAGTCGGAATTTTTCTTTACCCAACTCTTCTGCAGCTTTTATGAACCATTATACTACTGCTCACACTTTATAGGTATGACATATCAAACACGAATGTACAGGACGAGTTGAGTGGAGACACTAAAAATGAACAGCTATCTGTGGTACATAATCATTAATCTAACTTCTTGTAACATGCCTGTAATTGTGTGAACCATGTACATGCGTTTTTTTTTTTTCATTAGTAAGATTTTGGTATCACTGATATTTCAGGTTTACGACAGGCTTGCTTCAGTAATATCCATGGAGTGCAAGAACTCCAGTTTGCATGGGCCTTCAGAATGA

mRNA sequence

ATGGAGTGGGTTACAGGATACGAGCAGATGAGCAATCAAGCAGATTTTGGAGAGGCTAGAGGACTCGATGCTGGGCCTCGACTAGTGAAAAAATTAGTTGGCTTCGGGGATCATAGAACATCTGATATTGTAGCTAAAATTGCTGATGAAGAAGTTGCACATGTAGCTGTTGGTGTCTACTGGTTTGTCCTAGTCTGTCAGAAAATGGAACGTGCTCCATGCTCAACTTTTAAAGAGTTGTTAAAAGAATACAGTGTGGAACTAAAAGGGCCTTTCAATTATTCAGCTCGAGATGAAGCTGGCCTTCCACGTGATTGGTATGACATATCAAACACGAATGTACAGGACGAGTTGAGTGGAGACACTAAAAATGAACAGCTATCTGTGGTTTACGACAGGCTTGCTTCAGTAATATCCATGGAGTGCAAGAACTCCAGTTTGCATGGGCCTTCAGAATGA

Coding sequence (CDS)

ATGGAGTGGGTTACAGGATACGAGCAGATGAGCAATCAAGCAGATTTTGGAGAGGCTAGAGGACTCGATGCTGGGCCTCGACTAGTGAAAAAATTAGTTGGCTTCGGGGATCATAGAACATCTGATATTGTAGCTAAAATTGCTGATGAAGAAGTTGCACATGTAGCTGTTGGTGTCTACTGGTTTGTCCTAGTCTGTCAGAAAATGGAACGTGCTCCATGCTCAACTTTTAAAGAGTTGTTAAAAGAATACAGTGTGGAACTAAAAGGGCCTTTCAATTATTCAGCTCGAGATGAAGCTGGCCTTCCACGTGATTGGTATGACATATCAAACACGAATGTACAGGACGAGTTGAGTGGAGACACTAAAAATGAACAGCTATCTGTGGTTTACGACAGGCTTGCTTCAGTAATATCCATGGAGTGCAAGAACTCCAGTTTGCATGGGCCTTCAGAATGA

Protein sequence

MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASVISMECKNSSLHGPSE*
Homology
[Close]
BLAST of Csa6G419470 vs. Swiss-Prot
Match: Y077_HAEIN (Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-07
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1 

Query: 7   YEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVC 66
           +E+M+      EARGLDA P L +K+    D    +I+  I  +E+ HV +G +W+  + 
Sbjct: 171 WERMALVPRVLEARGLDATPVLQEKIAQRKDFAAVNILDIILRDEIGHVYIGNHWYHALS 230

Query: 67  QKMERAPCSTFKELLKEYSVEL-KGPFNYSARDEAGLPR---DW-YDISNT 113
           +K        F ELL +Y + + KG  N  AR +AG  +   DW Y++  T
Sbjct: 231 KKRGLDAMKCFTELLHKYRIVIFKGVINTDARIQAGFTQHELDWIYEVEQT 281

[Close]
BLAST of Csa6G419470 vs. TrEMBL
Match: A0A0A0KE26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419470 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.1e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVY 60
           MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVY
Sbjct: 1   MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVY 60

Query: 61  WFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSG 120
           WFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSG
Sbjct: 61  WFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSG 120

Query: 121 DTKNEQLSVVYDRLASVISMECKNSSLHGPSE 153
           DTKNEQLSVVYDRLASVISMECKNSSLHGPSE
Sbjct: 121 DTKNEQLSVVYDRLASVISMECKNSSLHGPSE 152

[Close]
BLAST of Csa6G419470 vs. TrEMBL
Match: A0A0B0PX92_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_13235 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.3e-52
Identity = 100/135 (74.07%), Postives = 118/135 (87.41%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVKK+VGFGDHRTS IVA+IA+EE+AHVAVGVYWF+ +C KM RAPCSTF
Sbjct: 251 EARGLDAGPRLVKKMVGFGDHRTSTIVARIAEEEIAHVAVGVYWFMFICHKMNRAPCSTF 310

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 137
           KELL+EY++ELKGPFNYSARDEAG+PR+WYD S+TN Q+       ++QLS VYDRLA +
Sbjct: 311 KELLQEYNLELKGPFNYSARDEAGIPREWYDSSSTNKQEREGNWKSSQQLSEVYDRLACI 370

Query: 138 ISMECKNSSLHGPSE 153
           ISME +NSSL+ PSE
Sbjct: 371 ISMESENSSLNRPSE 385

[Close]
BLAST of Csa6G419470 vs. TrEMBL
Match: A0A0D2RMX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G002000 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.3e-51
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVKK+VGFGDHRTS IVA+IA+EE+AHVAVGVYWF+ +C KM RAPCSTF
Sbjct: 249 EARGLDAGPRLVKKMVGFGDHRTSTIVARIAEEEIAHVAVGVYWFMFICHKMNRAPCSTF 308

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 137
           KELL+EY++ELKGPFNYSARDEAG+PR+WYD  +TN Q+       ++QLS VYDRLA +
Sbjct: 309 KELLQEYNLELKGPFNYSARDEAGIPREWYDSLSTNKQEREGNWKSSQQLSEVYDRLACI 368

Query: 138 ISMECKNSSLHGPSE 153
           ISME +NSSL+ P E
Sbjct: 369 ISMESENSSLNRPPE 383

[Close]
BLAST of Csa6G419470 vs. TrEMBL
Match: B9IQQ1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12030g PE=4 SV=2)

HSP 1 Score: 208.4 bits (529), Expect = 6.3e-51
Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLV+KLVGFGD+ TS IVA+IADEEVAHVAVGVYWFV VCQKM RAPCSTF
Sbjct: 249 EARGLDAGPRLVQKLVGFGDNITSKIVARIADEEVAHVAVGVYWFVSVCQKMGRAPCSTF 308

Query: 78  K-ELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLAS 137
           K +LL+EY+VELKGPFNYSARDEAG+PRDWYD S+TN QDE++     E+LSVVY+RLAS
Sbjct: 309 KVDLLREYNVELKGPFNYSARDEAGIPRDWYDKSSTNKQDEVTKPNTPEKLSVVYERLAS 368

Query: 138 VISMECKNSSLHGPS 152
           +I+ME +N+SL+ P+
Sbjct: 369 IIAMETENASLNKPA 383

[Close]
BLAST of Csa6G419470 vs. TrEMBL
Match: A0A061DQ65_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003677 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 97/135 (71.85%), Postives = 118/135 (87.41%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLV+K+VGFGDHRTS IVA+IA+EE+AHVAVG+YWF+ +C+KM  APCSTF
Sbjct: 246 EARGLDAGPRLVQKMVGFGDHRTSSIVARIAEEEIAHVAVGMYWFISICRKMNCAPCSTF 305

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 137
           KELL+EY++ELKGPFNYSARDEAG+PRDWYD S+T+ QD       ++QLS VYDRLA +
Sbjct: 306 KELLQEYNLELKGPFNYSARDEAGIPRDWYDSSSTSKQDAEENQNNSQQLSEVYDRLACL 365

Query: 138 ISMECKNSSLHGPSE 153
           ISME ++SSL+ PSE
Sbjct: 366 ISMESEHSSLNRPSE 380

[Close]
BLAST of Csa6G419470 vs. TAIR10
Match: AT1G06240.1 (AT1G06240.1 Protein of unknown function DUF455)

HSP 1 Score: 183.7 bits (465), Expect = 8.4e-47
Identity = 93/136 (68.38%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVK+L GFGD+RTS IVAKIA+EEVAHVAVGV WF+ VCQKM RAP  TF
Sbjct: 248 EARGLDAGPRLVKRLTGFGDNRTSKIVAKIAEEEVAHVAVGVDWFLSVCQKMNRAPSPTF 307

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDIS-NTNVQDELSGDTKNEQLSVVYDRLAS 137
           K+L+KEY VEL+GPFN+SAR+ AG+PRDWYD S  T V    +     EQLS VYDRL  
Sbjct: 308 KDLIKEYGVELRGPFNHSAREVAGIPRDWYDPSCGTEVDKGDNEQGDKEQLSAVYDRLTH 367

Query: 138 VISMECKNSSLHGPSE 153
           +ISME +NSSL  P++
Sbjct: 368 IISMESENSSLEKPAK 383

[Close]
BLAST of Csa6G419470 vs. NCBI nr
Match: gi|700192746|gb|KGN47950.1| (hypothetical protein Csa_6G419470 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 4.4e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVY 60
           MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVY
Sbjct: 1   MEWVTGYEQMSNQADFGEARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVY 60

Query: 61  WFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSG 120
           WFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSG
Sbjct: 61  WFVLVCQKMERAPCSTFKELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSG 120

Query: 121 DTKNEQLSVVYDRLASVISMECKNSSLHGPSE 153
           DTKNEQLSVVYDRLASVISMECKNSSLHGPSE
Sbjct: 121 DTKNEQLSVVYDRLASVISMECKNSSLHGPSE 152

[Close]
BLAST of Csa6G419470 vs. NCBI nr
Match: gi|449444707|ref|XP_004140115.1| (PREDICTED: uncharacterized protein LOC101207410 isoform X2 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.6e-71
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF
Sbjct: 252 EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 311

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 137
           KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV
Sbjct: 312 KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 371

Query: 138 ISMECKNSSLHGPSE 153
           ISMECKNSSLHGPSE
Sbjct: 372 ISMECKNSSLHGPSE 386

[Close]
BLAST of Csa6G419470 vs. NCBI nr
Match: gi|659096996|ref|XP_008449389.1| (PREDICTED: uncharacterized protein LOC103491286 [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-70
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF
Sbjct: 253 EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 312

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 137
           KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDE SGDTKNEQLSVVYDRLASV
Sbjct: 313 KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDESSGDTKNEQLSVVYDRLASV 372

Query: 138 ISMECKNSSLHGPSE 153
           ISMECKNSSLHGPSE
Sbjct: 373 ISMECKNSSLHGPSE 387

[Close]
BLAST of Csa6G419470 vs. NCBI nr
Match: gi|778716429|ref|XP_011657545.1| (PREDICTED: uncharacterized protein LOC101207410 isoform X1 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF
Sbjct: 252 EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 311

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSV 130
           KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSV
Sbjct: 312 KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSV 363

[Close]
BLAST of Csa6G419470 vs. NCBI nr
Match: gi|728850014|gb|KHG29457.1| (hypothetical protein F383_13235 [Gossypium arboreum])

HSP 1 Score: 212.6 bits (540), Expect = 4.8e-52
Identity = 100/135 (74.07%), Postives = 118/135 (87.41%), Query Frame = 1 

Query: 18  EARGLDAGPRLVKKLVGFGDHRTSDIVAKIADEEVAHVAVGVYWFVLVCQKMERAPCSTF 77
           EARGLDAGPRLVKK+VGFGDHRTS IVA+IA+EE+AHVAVGVYWF+ +C KM RAPCSTF
Sbjct: 251 EARGLDAGPRLVKKMVGFGDHRTSTIVARIAEEEIAHVAVGVYWFMFICHKMNRAPCSTF 310

Query: 78  KELLKEYSVELKGPFNYSARDEAGLPRDWYDISNTNVQDELSGDTKNEQLSVVYDRLASV 137
           KELL+EY++ELKGPFNYSARDEAG+PR+WYD S+TN Q+       ++QLS VYDRLA +
Sbjct: 311 KELLQEYNLELKGPFNYSARDEAGIPREWYDSSSTNKQEREGNWKSSQQLSEVYDRLACI 370

Query: 138 ISMECKNSSLHGPSE 153
           ISME +NSSL+ PSE
Sbjct: 371 ISMESENSSLNRPSE 385

The following BLAST results are available for this feature:
BLAST of Csa6G419470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y077_HAEIN6.1e-0733.33Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / D... [more]
BLAST of Csa6G419470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE26_CUCSA3.1e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419470 PE=4 SV=1[more]
A0A0B0PX92_GOSAR3.3e-5274.07Uncharacterized protein OS=Gossypium arboreum GN=F383_13235 PE=4 SV=1[more]
A0A0D2RMX6_GOSRA6.3e-5172.59Uncharacterized protein OS=Gossypium raimondii GN=B456_006G002000 PE=4 SV=1[more]
B9IQQ1_POPTR6.3e-5176.30Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12030g PE=4 SV=2[more]
A0A061DQ65_THECC1.1e-5071.85Uncharacterized protein OS=Theobroma cacao GN=TCM_003677 PE=4 SV=1[more]
BLAST of Csa6G419470 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06240.18.4e-4768.38 Protein of unknown function DUF455[more]
BLAST of Csa6G419470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192746|gb|KGN47950.1|4.4e-82100.00hypothetical protein Csa_6G419470 [Cucumis sativus][more]
gi|449444707|ref|XP_004140115.1|4.6e-71100.00PREDICTED: uncharacterized protein LOC101207410 isoform X2 [Cucumis sativus][more]
gi|659096996|ref|XP_008449389.1|2.3e-7099.26PREDICTED: uncharacterized protein LOC103491286 [Cucumis melo][more]
gi|778716429|ref|XP_011657545.1|2.2e-57100.00PREDICTED: uncharacterized protein LOC101207410 isoform X1 [Cucumis sativus][more]
gi|728850014|gb|KHG29457.1|4.8e-5274.07hypothetical protein F383_13235 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007402DUF455
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU117499cucumber EST collection version 3.0transcribed_cluster
CU133716cucumber EST collection version 3.0transcribed_cluster
CU143660cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G419470.1Csa6G419470.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU117499CU117499transcribed_cluster
CU133716CU133716transcribed_cluster
CU143660CU143660transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007402Protein of unknown function DUF455PFAMPF04305DUF455coord: 17..108
score: 6.5
NoneNo IPR availablePANTHERPTHR21496FERREDOXIN-RELATEDcoord: 18..147
score: 1.6
NoneNo IPR availablePANTHERPTHR21496:SF8SUBFAMILY NOT NAMEDcoord: 18..147
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G419470Cla016270Watermelon (97103) v1cuwmB445
Csa6G419470ClCG09G011360Watermelon (Charleston Gray)cuwcgB417
Csa6G419470Lsi11G016890Bottle gourd (USVL1VR-Ls)culsiB427
Csa6G419470MELO3C014352.2Melon (DHL92) v3.6.1cumedB469
Csa6G419470Cla97C09G174080Watermelon (97103) v2cuwmbB508
Csa6G419470Bhi05G001828Wax gourdcuwgoB567
Csa6G419470CSPI06G22490Wild cucumber (PI 183967)cpicuB313
Csa6G419470Cucsa.184960Cucumber (Gy14) v1cgycuB282
Csa6G419470CmoCh11G020010Cucurbita moschata (Rifu)cmocuB125
Csa6G419470CsGy6G021730Cucumber (Gy14) v2cgybcuB281
Csa6G419470Carg04631Silver-seed gourdcarcuB0421
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G419470Cucurbita pepo (Zucchini)cpecuB247
Csa6G419470Cucurbita pepo (Zucchini)cpecuB683
Csa6G419470Bottle gourd (USVL1VR-Ls)culsiB422
Csa6G419470Silver-seed gourdcarcuB0561
Csa6G419470Silver-seed gourdcarcuB0665
Csa6G419470Watermelon (97103) v2cuwmbB438
Csa6G419470Watermelon (97103) v2cuwmbB511
Csa6G419470Wax gourdcuwgoB560
Csa6G419470Wax gourdcuwgoB564
Csa6G419470Wax gourdcuwgoB613
Csa6G419470Cucurbita maxima (Rimu)cmacuB140
Csa6G419470Cucurbita maxima (Rimu)cmacuB559
Csa6G419470Cucurbita maxima (Rimu)cmacuB519
Csa6G419470Cucurbita maxima (Rimu)cmacuB523
Csa6G419470Cucurbita moschata (Rifu)cmocuB510
Csa6G419470Cucurbita moschata (Rifu)cmocuB515
Csa6G419470Cucurbita moschata (Rifu)cmocuB551
Csa6G419470Melon (DHL92) v3.5.1cumeB489
Csa6G419470Watermelon (97103) v1cuwmB522