Csa6G410610 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G410610
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 18983412 .. 18983734 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCTGATGCTTTCTCAACTAATATTCAGATGATGCACCTTAATCTGTGCTTGAATGCAGAACATGATTTGGTTTTGGCAGACAAAGAAAAGATATGGTGTGATAGAAAAGCAACACAGATTAAATCTAAGATATGGGGAAGGCGGAAGTAGGCTGTTGGTGAACTTTAATGTTGTAGCGAATGAAACCTTCATTCTGCAATCTGCATGAATCTGCTGACTATTATCTATCTAATTTCATGTTAACATCCCTAAGATTAGTCATGTGTCTGCTGGCTATTATCTCTGTTCTGGCCATTGTGTCCTTACCAGATTTTTAG

mRNA sequence

ATGGGCTCTGATGCTTTCTCAACTAATATTCAGATGATGCACCTTAATCTGTGCTTGAATGCAGAACATGATTTGCGAATGAAACCTTCATTCTGCAATCTGCATGAATCTGCTGACTATTATCTATCTAATTTCATGTTAACATCCCTAAGATTAGTCATGTGTCTGCTGGCTATTATCTCTGTTCTGGCCATTGTGTCCTTACCAGATTTTTAG

Coding sequence (CDS)

ATGGGCTCTGATGCTTTCTCAACTAATATTCAGATGATGCACCTTAATCTGTGCTTGAATGCAGAACATGATTTGCGAATGAAACCTTCATTCTGCAATCTGCATGAATCTGCTGACTATTATCTATCTAATTTCATGTTAACATCCCTAAGATTAGTCATGTGTCTGCTGGCTATTATCTCTGTTCTGGCCATTGTGTCCTTACCAGATTTTTAG

Protein sequence

MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAIISVLAIVSLPDF*
Homology
[Close]
BLAST of Csa6G410610 vs. TrEMBL
Match: A0A0A0KJF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410610 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAII 60
          MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAII
Sbjct: 1  MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAII 60

Query: 61 SVLAIVSLPDF 72
          SVLAIVSLPDF
Sbjct: 61 SVLAIVSLPDF 71

[Close]
BLAST of Csa6G410610 vs. NCBI nr
Match: gi|700192702|gb|KGN47906.1| (hypothetical protein Csa_6G410610 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 4.4e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAII 60
          MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAII
Sbjct: 1  MGSDAFSTNIQMMHLNLCLNAEHDLRMKPSFCNLHESADYYLSNFMLTSLRLVMCLLAII 60

Query: 61 SVLAIVSLPDF 72
          SVLAIVSLPDF
Sbjct: 61 SVLAIVSLPDF 71

The following BLAST results are available for this feature:
BLAST of Csa6G410610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJF9_CUCSA3.1e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410610 PE=4 SV=1[more]
BLAST of Csa6G410610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192702|gb|KGN47906.1|4.4e-32100.00hypothetical protein Csa_6G410610 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102240cucumber EST collection version 3.0transcribed_cluster
CU105063cucumber EST collection version 3.0transcribed_cluster
CU117945cucumber EST collection version 3.0transcribed_cluster
CU133144cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G410610.1Csa6G410610.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105063CU105063transcribed_cluster
CU117945CU117945transcribed_cluster
CU133144CU133144transcribed_cluster
CU102240CU102240transcribed_cluster