Csa6G410030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G410030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein translocase secy subunit, putative; contains IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)
LocationChr6 : 18927270 .. 18929628 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAAACACATACAAAATAGAAAAAGGGAAATTAGCCAACGTAGCCTTGAGCTCAGTTGGCGCAATTCCGAAGTCCCGCCATGGAAGCAACGCCTTACTGCACTCGTCTTCTCCGTCCCCCGCTGCTCCATTCTGTAGCTTCAAAGTTTCCAGGTTAGCCTCCTGAACTTTGGTCAGCTAGAAAACTATATTACATAGGAAGAACGATAAATAGTTCAATTACATTGTTATCCTATGCGTGTTTCATTTGATATCTGTTCTCCTGAAACTAGAGTGGTTCATTCTTATTTTCATTTTCTCGAAAAGGTTGACCCGTTTAGTTGTGTTCATTTCCTTGTTGAATTAGATTGTAGTTGAAATTACTTTACTTGCATAAAGATTTTTCATGTGGCAATGAAGTATAGGGCTTGTACTGGAACCAATATTCTTCGTTGTTAACCTTTAATAAGAGGGTGTTTTTTTCGAGGAGTGGAGAACTCCAATGAGTCGTAAAGTTTAGGAGTCGTGAACTGTTAGGAACAGTGTAAGAAGTTAATAAGACATAAAATTAGTATTTTTTTTGGCTGTGCGACGCATGAACTTATTGGACCAAATGAGGAATGGAGTTCACAATTACACTCAAAGAAGCTATTTCTTTTAATGGGAAGTTCAGACTCAATCTCTTCAGCAGTAGGCTGGAGGAGCTAGATTCAGGTTTCTTGCTGGTGTTGGGGTTTTCAGTGGTCTTTGAGAGAAGAAGATGAGAAATGATAAGGGTGTTTGCCTGTGATATCATGATACCAAGTCAATGAACACAGTGTTAAGAAATAATTCTCAGCTCAATGGAGGTTGGCTACTCGGGATTTTACTTATAGTGTAGTAGACGTAGATGGACAGAGGATTCGCTATGATAGACCACACGTGACCGCTACTCTTGGCCGAAGGAATAGCCAAATAAATAATTTTACTAACAATTACAAATGGAAAATAATGATCTATAAAAATAGTACAACTGATATCATAGGGAAGAAAACTGTAGTGAAGAAAAACCCAACTGGCCAACTCAGGGAGACGACACAAATTATTTTTGAAGAATTTCTGATAATATGTTCAGACAATATATTGCTTTGACTTATTAGGAATCTATTTTAACAGAAATGTCTCTTGTGTAATTTTTTCTATCTCAGTTGAGTGGTTGTGTAAATGTAATTAATCAAATGTGAGAACTCCAGCTTTTCTGAGTTCATTTCTGTCTCTTTTTATAATGTTTTGATATCTTAGGTTTGGTTGGGAAAATCTATTTCATGTTTTCCTTTTATATCAGAAATGCTTCCATATGGTTTTAGTATACCATGACCAACAATCAATTTACTATTTGGTTGTCAGCTTAGAATAAGTAGGATAATTTCTCACCTCACTACCATGTATTTGTTCGATATTTTCTTCTTAGGGTTAAGGTTAACTGAAAACTTATTTCCATTGTTGAACACAAGCAAATTCATTTTTCTCCCAGGTTTAAAATTGCTCTAAAACACTGATGTATAATTTATGTCTAATTGATTCTTCAGCTGAACATGGGAGTTTGCTTTGCTACAATGTAATATTTTGCATAAAACACTTCTAATATGGCCTCACTTGGCTGCTTTTATTCAAACAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAAGTTTGGTAGATCTACCCCTGTGATCAATTTCAACACTTCAAAATTCAAGGGAAGAAATAATGTGTTATTGAAGAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCATTTGATTGTTTCTCAAATCAGTGCCAAAACAGCCGTATGAATGTCAAGGCAACATCTGAGCAATGTCTAGACCTTGAAACTTTTTCACAGGAATCAAATGATGGGGATGCTTTTCTTACTTCTTCCAATGGCACTAACTTTGATATATGGAAACCTAAGTCCAGAGCATTTAGAAATAGATTCTTGAACCTTGTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGAATCATTTTTTAAAAGTGAAATACGGCGAAGGTTGTTTGTAACAGCAGTCCTAATTGTTATAAGTCGTGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGATACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGGTGAGTTCCTAAAATTTTATGCATGTGTGAGTTATCACTATATTCTTATTGTTGCGGAATTTAATTTTGTTTCACTATCTTTGTCTCATATTCATGTCCATGGCAGATGAACTCGGTGATTTTACTACCGAGATGAAAATGTCTTTTTTCCAACTGGGCATCAGTCCTCAGATTATAGCATCAATCATCATGCAGGTTTAA

mRNA sequence

ATGGAAGCAACGCCTTACTGCACTCGTCTTCTCCGTCCCCCGCTGCTCCATTCTGTAGCTTCAAAGTTTCCAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAAGTTTGGTAGATCTACCCCTGTGATCAATTTCAACACTTCAAAATTCAAGGGAAGAAATAATGTGTTATTGAAGAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCATTTGATTGTTTCTCAAATCAGTGCCAAAACAGCCGTATGAATGTCAAGGCAACATCTGAGCAATGTCTAGACCTTGAAACTTTTTCACAGGAATCAAATGATGGGGATGCTTTTCTTACTTCTTCCAATGGCACTAACTTTGATATATGGAAACCTAAGTCCAGAGCATTTAGAAATAGATTCTTGAACCTTGTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGAATCATTTTTTAAAAGTGAAATACGGCGAAGGTTGTTTGTAACAGCAGTCCTAATTGTTATAAGTCGTGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGATACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGATGAACTCGGTGATTTTACTACCGAGATGAAAATGTCTTTTTTCCAACTGGGCATCAGTCCTCAGATTATAGCATCAATCATCATGCAGGTTTAA

Coding sequence (CDS)

ATGGAAGCAACGCCTTACTGCACTCGTCTTCTCCGTCCCCCGCTGCTCCATTCTGTAGCTTCAAAGTTTCCAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAAGTTTGGTAGATCTACCCCTGTGATCAATTTCAACACTTCAAAATTCAAGGGAAGAAATAATGTGTTATTGAAGAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCATTTGATTGTTTCTCAAATCAGTGCCAAAACAGCCGTATGAATGTCAAGGCAACATCTGAGCAATGTCTAGACCTTGAAACTTTTTCACAGGAATCAAATGATGGGGATGCTTTTCTTACTTCTTCCAATGGCACTAACTTTGATATATGGAAACCTAAGTCCAGAGCATTTAGAAATAGATTCTTGAACCTTGTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGAATCATTTTTTAAAAGTGAAATACGGCGAAGGTTGTTTGTAACAGCAGTCCTAATTGTTATAAGTCGTGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGATACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGATGAACTCGGTGATTTTACTACCGAGATGAAAATGTCTTTTTTCCAACTGGGCATCAGTCCTCAGATTATAGCATCAATCATCATGCAGGTTTAA

Protein sequence

MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLLKRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFDIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV*
Homology
[Close]
BLAST of Csa6G410030 vs. Swiss-Prot
Match: SCY2_ARATH (Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-45
Identity = 102/184 (55.43%), Postives = 128/184 (69.57%), Query Frame = 1 

Query: 46  NFNTSKFKGRNNVLLKRPLVSKVNQKSFDC-FSNQCQNSRMNVKATSEQCLDLETFSQES 105
           N N S+ +  +++ + R  +    +KSF   +S++ ++  M+ +      LD+E    +S
Sbjct: 44  NLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTDALDVEIIPPDS 103

Query: 106 NDGDAFLTSSNGTNFDIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAV 165
            D      S+        +PKS  FRNRFL+ VR+ SVLN AAE FFKSEIRRRLFVTAV
Sbjct: 104 QDIRNSQNSAVSNTLQDDRPKS--FRNRFLDFVRISSVLNTAAERFFKSEIRRRLFVTAV 163

Query: 166 LIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASI 225
           L+V+SRVGYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+F  E+K+S FQLG+SPQIIASI
Sbjct: 164 LLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQLGLSPQIIASI 223

Query: 226 IMQV 229
           IMQV
Sbjct: 224 IMQV 225

[Close]
BLAST of Csa6G410030 vs. Swiss-Prot
Match: SECY_CYACA (Protein translocase subunit SecY OS=Cyanidium caldarium GN=secY PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 152 KSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSF 211
           ++ +R RLF T   I + R+G F+P+PG D++L   DY +    ++  + D     K+S 
Sbjct: 4   ENNLRLRLFQTMKFIALERLGLFVPIPGIDQKLFSSDYSNNAISNLLNVFDNNQAPKLSV 63

Query: 212 FQLGISPQIIASIIMQV 229
           F LGI P I A+I +Q+
Sbjct: 64  FALGIIPYINATITIQI 80

[Close]
BLAST of Csa6G410030 vs. TrEMBL
Match: A0A0A0KHN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410030 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.6e-125
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60
           MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL
Sbjct: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120
           KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD
Sbjct: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 228

[Close]
BLAST of Csa6G410030 vs. TrEMBL
Match: W9QKS0_9ROSA (Preprotein translocase subunit SCY2 OS=Morus notabilis GN=L484_025060 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 116/188 (61.70%), Postives = 140/188 (74.47%), Query Frame = 1 

Query: 41  STPVINFNTSKFKGRNNVLLKRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETF 100
           S P+   NT +   R+ + L RP +SKVN++SF  FS+Q   + M ++ TS   L+LET 
Sbjct: 36  SYPICRVNTVESSRRHKMFLDRPFISKVNKRSFVKFSDQICRNCMTIEGTSASSLNLETI 95

Query: 101 SQESNDGDAFLTSSNGTNFDIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLF 160
           S     G   L S +  +F+    + + FRNRFLN VR+ SVLNNAAESFFKSEIRRRLF
Sbjct: 96  SPRITGGTDGLISQDINDFEDSHSRPKMFRNRFLNFVRISSVLNNAAESFFKSEIRRRLF 155

Query: 161 VTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQI 220
           VTA+LIV+SRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF  E+K+S FQLG+ PQI
Sbjct: 156 VTALLIVVSRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFAGELKLSLFQLGVGPQI 215

Query: 221 IASIIMQV 229
           +ASIIMQV
Sbjct: 216 MASIIMQV 223

[Close]
BLAST of Csa6G410030 vs. TrEMBL
Match: D7TPF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00040 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.4e-54
Identity = 122/229 (53.28%), Postives = 151/229 (65.94%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVAAA-YDVQFCHFKFGRSTPVINFNTSKFKGRNNVL 60
           MEAT   +    P        KFP     + +Q C   + R+   +   +S+   R   L
Sbjct: 35  MEATLLSSHHFNPRFFSPKPFKFPGGQVEHGLQLCCPFYARTNVSLKLISSESSARRFSL 94

Query: 61  LKRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNF 120
           L RP +S+ N+K    FS Q ++  +N +AT  Q ++ E F Q  +DG       N  N 
Sbjct: 95  LSRPFLSRANKKLCVNFSEQLRSDYLNAEATPLQSVNDELFPQRHDDGSDVFGPHNVNNS 154

Query: 121 DIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPG 180
           +  +P+++ FRNRFLN  RL SVLNNAAESFFKSEIRRRLFVTAVL+VISRVGYFIPLPG
Sbjct: 155 ETLQPRTKMFRNRFLNFARLGSVLNNAAESFFKSEIRRRLFVTAVLLVISRVGYFIPLPG 214

Query: 181 FDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           FDRRL+P+DYLSFVSGSVDELGDF  E+K+S FQLGISPQI ASI+MQV
Sbjct: 215 FDRRLMPEDYLSFVSGSVDELGDFAGELKLSLFQLGISPQIAASILMQV 263

[Close]
BLAST of Csa6G410030 vs. TrEMBL
Match: M5VMG0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003406mg PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.5e-53
Identity = 131/230 (56.96%), Postives = 151/230 (65.65%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVA-AAYDVQFCHFKFGRSTPV-INFNTSKFKGRNNV 60
           MEA    ++   P L     SKF  A +  D+Q C     R++ V +  N  +   RN V
Sbjct: 1   MEAALLSSQRFHPQLF---PSKFRGAISGCDIQICCLPLARTSHVSLKTNPLQSCTRNFV 60

Query: 61  LLKRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTN 120
              RP  SK N++    FSNQ  N   NV+AT  + L+LE       DG      ++   
Sbjct: 61  SPNRPFPSKANKRVSAKFSNQFLNDYTNVEATPPESLNLEVPPLSPEDGTEISKQNDIDK 120

Query: 121 FDIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLP 180
               + +   FRNRFL+ VRL SVLN+AAESFFKSEIRRRLFVTAVLIVISRVGYFIPLP
Sbjct: 121 AHTEQARPLTFRNRFLDFVRLSSVLNSAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLP 180

Query: 181 GFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           GFDRRLIPQDYLSFVSGSVDELGDFT E+KMSFFQLGISPQIIASIIMQV
Sbjct: 181 GFDRRLIPQDYLSFVSGSVDELGDFTAELKMSFFQLGISPQIIASIIMQV 227

[Close]
BLAST of Csa6G410030 vs. TrEMBL
Match: A0A061DXQ3_THECC (SecY protein transport family protein OS=Theobroma cacao GN=TCM_004400 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.8e-52
Identity = 124/229 (54.15%), Postives = 150/229 (65.50%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVA-AAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVL 60
           MEAT   +    PP   +     P    A D++F H  + +    +          + +L
Sbjct: 1   MEATLLSSHRYHPPHFATKPLNVPGGHVAPDLRFYHSLYAKPHHTLKIKLVNPSRSHFLL 60

Query: 61  LKRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNF 120
             + L S+ N+K     S+Q ++  MNVK+T E  L+LE     S++G      +   N 
Sbjct: 61  PNKFLQSRTNRKWLTNSSDQLRSDYMNVKSTPES-LNLEVVPSRSDEGSDVSNFNGVNNI 120

Query: 121 DIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPG 180
           D    + + FRNRFLN VRL SVLNNAAESFFKSEIRRRLFVTAVL+VISRVGYFIPLPG
Sbjct: 121 DTLHVRPKYFRNRFLNFVRLSSVLNNAAESFFKSEIRRRLFVTAVLLVISRVGYFIPLPG 180

Query: 181 FDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           FDRRLIPQDYLSFVSGSVDELGDF+ E+K+SFFQLGISPQIIASIIMQV
Sbjct: 181 FDRRLIPQDYLSFVSGSVDELGDFSAELKLSFFQLGISPQIIASIIMQV 228

[Close]
BLAST of Csa6G410030 vs. TAIR10
Match: AT2G31530.1 (AT2G31530.1 SecY protein transport family protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46
Identity = 102/184 (55.43%), Postives = 128/184 (69.57%), Query Frame = 1 

Query: 46  NFNTSKFKGRNNVLLKRPLVSKVNQKSFDC-FSNQCQNSRMNVKATSEQCLDLETFSQES 105
           N N S+ +  +++ + R  +    +KSF   +S++ ++  M+ +      LD+E    +S
Sbjct: 44  NLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTDALDVEIIPPDS 103

Query: 106 NDGDAFLTSSNGTNFDIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAV 165
            D      S+        +PKS  FRNRFL+ VR+ SVLN AAE FFKSEIRRRLFVTAV
Sbjct: 104 QDIRNSQNSAVSNTLQDDRPKS--FRNRFLDFVRISSVLNTAAERFFKSEIRRRLFVTAV 163

Query: 166 LIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASI 225
           L+V+SRVGYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+F  E+K+S FQLG+SPQIIASI
Sbjct: 164 LLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQLGLSPQIIASI 223

Query: 226 IMQV 229
           IMQV
Sbjct: 224 IMQV 225

[Close]
BLAST of Csa6G410030 vs. NCBI nr
Match: gi|778716195|ref|XP_004140093.2| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus])

HSP 1 Score: 456.1 bits (1172), Expect = 3.7e-125
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60
           MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL
Sbjct: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120
           KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD
Sbjct: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 228

[Close]
BLAST of Csa6G410030 vs. NCBI nr
Match: gi|700192693|gb|KGN47897.1| (hypothetical protein Csa_6G410030 [Cucumis sativus])

HSP 1 Score: 456.1 bits (1172), Expect = 3.7e-125
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60
           MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL
Sbjct: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120
           KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD
Sbjct: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 228

[Close]
BLAST of Csa6G410030 vs. NCBI nr
Match: gi|659097114|ref|XP_008449450.1| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo])

HSP 1 Score: 444.1 bits (1141), Expect = 1.5e-121
Identity = 223/228 (97.81%), Postives = 224/228 (98.25%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60
           MEATP CTRLLRPPLLHSV SKF VAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL
Sbjct: 1   MEATPCCTRLLRPPLLHSVHSKFRVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60

Query: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120
           KRPLVSK+NQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD
Sbjct: 61  KRPLVSKMNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120

Query: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
           IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           DRRLIPQDYLSFVSGS DELGDFTTEMKMSFFQLGISPQIIASIIMQV
Sbjct: 181 DRRLIPQDYLSFVSGSADELGDFTTEMKMSFFQLGISPQIIASIIMQV 228

[Close]
BLAST of Csa6G410030 vs. NCBI nr
Match: gi|694332254|ref|XP_009356772.1| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 224.9 bits (572), Expect = 1.4e-55
Identity = 128/228 (56.14%), Postives = 155/228 (67.98%), Query Frame = 1 

Query: 1   MEATPYCTRLLRPPLLHSVASKFPVAAAYDVQFCHFKFGRSTPVINFNTSKFKGRNNVLL 60
           MEAT   ++   P L  S A      +  ++QFC     +++  ++  T+    RN +L 
Sbjct: 1   MEATLLISQRFHPKL--SPAKSRGAVSGCEIQFCCLPIVKNSSYVSLRTNP---RNFMLP 60

Query: 61  KRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETFSQESNDGDAFLTSSNGTNFD 120
            RPL+S+VN++    FSN+  N+  NV+AT  + L +E      +DG      +   N  
Sbjct: 61  NRPLLSRVNRRVSTKFSNRFLNNYTNVEATPPESLKVEVNPLSGSDGTEISKQNEVENLK 120

Query: 121 IWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180
             K +   FRNRFLN VRL SV+NNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF
Sbjct: 121 DEKARPMTFRNRFLNFVRLSSVVNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGF 180

Query: 181 DRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQIIASIIMQV 229
           DRRLIPQDYLSFVSGSVDELG+F  E+KMSFFQLGISPQIIASIIMQV
Sbjct: 181 DRRLIPQDYLSFVSGSVDELGNFAAELKMSFFQLGISPQIIASIIMQV 223

[Close]
BLAST of Csa6G410030 vs. NCBI nr
Match: gi|703076675|ref|XP_010090395.1| (Preprotein translocase subunit SCY2 [Morus notabilis])

HSP 1 Score: 221.5 bits (563), Expect = 1.5e-54
Identity = 116/188 (61.70%), Postives = 140/188 (74.47%), Query Frame = 1 

Query: 41  STPVINFNTSKFKGRNNVLLKRPLVSKVNQKSFDCFSNQCQNSRMNVKATSEQCLDLETF 100
           S P+   NT +   R+ + L RP +SKVN++SF  FS+Q   + M ++ TS   L+LET 
Sbjct: 36  SYPICRVNTVESSRRHKMFLDRPFISKVNKRSFVKFSDQICRNCMTIEGTSASSLNLETI 95

Query: 101 SQESNDGDAFLTSSNGTNFDIWKPKSRAFRNRFLNLVRLRSVLNNAAESFFKSEIRRRLF 160
           S     G   L S +  +F+    + + FRNRFLN VR+ SVLNNAAESFFKSEIRRRLF
Sbjct: 96  SPRITGGTDGLISQDINDFEDSHSRPKMFRNRFLNFVRISSVLNNAAESFFKSEIRRRLF 155

Query: 161 VTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFTTEMKMSFFQLGISPQI 220
           VTA+LIV+SRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF  E+K+S FQLG+ PQI
Sbjct: 156 VTALLIVVSRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFAGELKLSLFQLGVGPQI 215

Query: 221 IASIIMQV 229
           +ASIIMQV
Sbjct: 216 MASIIMQV 223

The following BLAST results are available for this feature:
BLAST of Csa6G410030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SCY2_ARATH2.9e-4555.43Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SC... [more]
SECY_CYACA4.1e-0736.36Protein translocase subunit SecY OS=Cyanidium caldarium GN=secY PE=2 SV=2[more]
BLAST of Csa6G410030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHN4_CUCSA2.6e-125100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410030 PE=4 SV=1[more]
W9QKS0_9ROSA1.1e-5461.70Preprotein translocase subunit SCY2 OS=Morus notabilis GN=L484_025060 PE=3 SV=1[more]
D7TPF0_VITVI2.4e-5453.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00040 PE=3 SV=... [more]
M5VMG0_PRUPE4.5e-5356.96Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003406mg PE=3 SV=1[more]
A0A061DXQ3_THECC3.8e-5254.15SecY protein transport family protein OS=Theobroma cacao GN=TCM_004400 PE=3 SV=1[more]
BLAST of Csa6G410030 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31530.11.6e-4655.43 SecY protein transport family protein[more]
BLAST of Csa6G410030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778716195|ref|XP_004140093.2|3.7e-125100.00PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus][more]
gi|700192693|gb|KGN47897.1|3.7e-125100.00hypothetical protein Csa_6G410030 [Cucumis sativus][more]
gi|659097114|ref|XP_008449450.1|1.5e-12197.81PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo][more]
gi|694332254|ref|XP_009356772.1|1.4e-5556.14PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Pyrus x bretschne... [more]
gi|703076675|ref|XP_010090395.1|1.5e-5461.70Preprotein translocase subunit SCY2 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002208SecY/SEC61-alpha
IPR023201SecY_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0016020 membrane
cellular_component GO:0009526 plastid envelope
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G410030.1Csa6G410030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002208SecY/SEC61-alpha familyPANTHERPTHR10906SECY/SEC61-ALPHA FAMILY MEMBERcoord: 121..228
score: 3.4
IPR023201SecY subunit domainGENE3DG3DSA:1.10.3370.10coord: 143..228
score: 9.8
IPR023201SecY subunit domainunknownSSF103491Preprotein translocase SecY subunitcoord: 139..228
score: 1.96
NoneNo IPR availablePRINTSPR00303SECYTRNLCASEcoord: 159..177
score: 8.0E-11coord: 209..228
score: 8.0
NoneNo IPR availablePANTHERPTHR10906:SF2PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTICcoord: 121..228
score: 3.4