Csa6G408260 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G408260
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 18735769 .. 18736399 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGAGAATGTCGATGGAAACGGTTCTTTGCAAAGTAACCTTTCAACTTCCATCCACAAGGGTGCAAAGAAGAAATTAAGAAAAAAAGGTTGTTGTTCCTTTGTTAATCACCTGAAAAGAAGACAGCTCAGTCGCAACAATTAGTCACTCAAGAACCCTTCCCACTTCCAGCCGTAATCTCACATCTTCATCCACCTCAGATTCCAATACATCTTTGCCAATTTCCAACCAATCAAATAATGAAGTGCATATAGCATTCCATTCATCCAAGGAAAATTTGAATAATAACCTTCTTAAGCCTCCATCTCAAATTACAAGTAAGGTTGATATATCTCATAAGCTTCCGGCTGTCATTTCCTTGCACCAACATATGAAGAAAAACAAGTGCAACAGTTCAAAAGTGTCTCAAAGAAGTTCTAATTTGTTCAAGTCTTTTCATAAACACTTCGCCAGAAAAAAGACTTCATTTTACAATTCCTGGACAAAAATTACAAACCCTGATGTGCTAGAGGCGAGTTGTGTCAAGATCCAAGTCCCTGGTCTAGAACAAAACAGGTCAGCTTCTTTACCTTTATTGAATAAACCCATTTCCCAATCTGGATGTAATTCTCAAGAGTCTCCATAA

mRNA sequence

ATGAAGAAAGAGAATGTCGATGGAAACGGTTCTTTGCAAAGTAACCTTTCAACTTCCATCCACAAGGGTGCAAAGAAGAAATTAAGAAAAAAAGACAGCTCAGTCGCAACAATTAGTCACTCAAGAACCCTTCCCACTTCCAGCCGTAATCTCACATCTTCATCCACCTCAGATTCCAATACATCTTTGCCAATTTCCAACCAATCAAATAATGAAGTGCATATAGCATTCCATTCATCCAAGGAAAATTTGAATAATAACCTTCTTAAGCCTCCATCTCAAATTACAAGTAAGGTTGATATATCTCATAAGCTTCCGGCTGTCATTTCCTTGCACCAACATATGAAGAAAAACAAGTGCAACAGTTCAAAAGTGTCTCAAAGAAGTTCTAATTTGTTCAAGTCTTTTCATAAACACTTCGCCAGAAAAAAGACTTCATTTTACAATTCCTGGACAAAAATTACAAACCCTGATGTGCTAGAGGCGAGTTGTGTCAAGATCCAAGTCCCTGGTCTAGAACAAAACAGGTCAGCTTCTTTACCTTTATTGAATAAACCCATTTCCCAATCTGGATGTAATTCTCAAGAGTCTCCATAA

Coding sequence (CDS)

ATGAAGAAAGAGAATGTCGATGGAAACGGTTCTTTGCAAAGTAACCTTTCAACTTCCATCCACAAGGGTGCAAAGAAGAAATTAAGAAAAAAAGACAGCTCAGTCGCAACAATTAGTCACTCAAGAACCCTTCCCACTTCCAGCCGTAATCTCACATCTTCATCCACCTCAGATTCCAATACATCTTTGCCAATTTCCAACCAATCAAATAATGAAGTGCATATAGCATTCCATTCATCCAAGGAAAATTTGAATAATAACCTTCTTAAGCCTCCATCTCAAATTACAAGTAAGGTTGATATATCTCATAAGCTTCCGGCTGTCATTTCCTTGCACCAACATATGAAGAAAAACAAGTGCAACAGTTCAAAAGTGTCTCAAAGAAGTTCTAATTTGTTCAAGTCTTTTCATAAACACTTCGCCAGAAAAAAGACTTCATTTTACAATTCCTGGACAAAAATTACAAACCCTGATGTGCTAGAGGCGAGTTGTGTCAAGATCCAAGTCCCTGGTCTAGAACAAAACAGGTCAGCTTCTTTACCTTTATTGAATAAACCCATTTCCCAATCTGGATGTAATTCTCAAGAGTCTCCATAA

Protein sequence

MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSNTSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKCNSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASLPLLNKPISQSGCNSQESP*

Homology

[Close]

BLAST of Csa6G408260 vs. TrEMBL
Match: A0A0A0KHK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408260 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.4e-106
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSN 60
           MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSN
Sbjct: 1   MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSN 60

Query: 61  TSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKC 120
           TSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKC
Sbjct: 61  TSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKC 120

Query: 121 NSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASL 180
           NSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASL
Sbjct: 121 NSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASL 180

Query: 181 PLLNKPISQSGCNSQESP 199
           PLLNKPISQSGCNSQESP
Sbjct: 181 PLLNKPISQSGCNSQESP 198

[Close]

BLAST of Csa6G408260 vs. TrEMBL
Match: A0A0A0LY46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690320 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-08
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1


Query: 55  STSDSNTSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQH 114
           S S  ++S P+ +  N++      SSK +LN+ ++K  ++  +K++   KL    SL   
Sbjct: 86  SVSSLSSSSPLLSMGNSDSK----SSKVSLNS-VIKQAAREANKLEPFQKLLIGASLRHG 145

Query: 115 MKK-NKCNSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLE 162
           +K+  K  SSKV +R+  LFK   K F+RKKT F NSWTKITNPD+LE
Sbjct: 146 LKEVKKLKSSKVPKRNYPLFKPLRKQFSRKKT-FNNSWTKITNPDLLE 187

[Close]

BLAST of Csa6G408260 vs. NCBI nr
Match: gi|700192663|gb|KGN47867.1| (hypothetical protein Csa_6G408260 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSN 60
           MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSN
Sbjct: 1   MKKENVDGNGSLQSNLSTSIHKGAKKKLRKKDSSVATISHSRTLPTSSRNLTSSSTSDSN 60

Query: 61  TSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKC 120
           TSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKC
Sbjct: 61  TSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQHMKKNKC 120

Query: 121 NSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASL 180
           NSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASL
Sbjct: 121 NSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASL 180

Query: 181 PLLNKPISQSGCNSQESP 199
           PLLNKPISQSGCNSQESP
Sbjct: 181 PLLNKPISQSGCNSQESP 198

[Close]

BLAST of Csa6G408260 vs. NCBI nr
Match: gi|700211699|gb|KGN66795.1| (hypothetical protein Csa_1G690320 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1


Query: 55  STSDSNTSLPISNQSNNEVHIAFHSSKENLNNNLLKPPSQITSKVDISHKLPAVISLHQH 114
           S S  ++S P+ +  N++      SSK +LN+ ++K  ++  +K++   KL    SL   
Sbjct: 86  SVSSLSSSSPLLSMGNSDSK----SSKVSLNS-VIKQAAREANKLEPFQKLLIGASLRHG 145

Query: 115 MKK-NKCNSSKVSQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLE 162
           +K+  K  SSKV +R+  LFK   K F+RKKT F NSWTKITNPD+LE
Sbjct: 146 LKEVKKLKSSKVPKRNYPLFKPLRKQFSRKKT-FNNSWTKITNPDLLE 187

The following BLAST results are available for this feature:

BLAST of Csa6G408260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHK4_CUCSA	1.4e-106	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408260 PE=4 SV=1	[more]
A0A0A0LY46_CUCSA	2.9e-08	41.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690320 PE=4 SV=1	[more]

BLAST of Csa6G408260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192663\|gb\|KGN47867.1\|	2.0e-106	100.00	hypothetical protein Csa_6G408260 [Cucumis sativus]	[more]
gi\|700211699\|gb\|KGN66795.1\|	4.2e-08	41.67	hypothetical protein Csa_1G690320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G408260.1	Csa6G408260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G408260	Silver-seed gourd	carcuB0771
Csa6G408260	Silver-seed gourd	carcuB0772
Csa6G408260	Watermelon (97103) v2	cuwmbB486
Csa6G408260	Wax gourd	cuwgoB566
Csa6G408260	Wax gourd	cuwgoB568
Csa6G408260	Cucumber (Gy14) v1	cgycuB197
Csa6G408260	Cucurbita maxima (Rimu)	cmacuB524
Csa6G408260	Cucurbita maxima (Rimu)	cmacuB628
Csa6G408260	Cucurbita moschata (Rifu)	cmocuB517
Csa6G408260	Cucurbita moschata (Rifu)	cmocuB618
Csa6G408260	Melon (DHL92) v3.5.1	cumeB492
Csa6G408260	Watermelon (Charleston Gray)	cuwcgB492
Csa6G408260	Watermelon (97103) v1	cuwmB485
Csa6G408260	Cucurbita pepo (Zucchini)	cpecuB255
Csa6G408260	Bottle gourd (USVL1VR-Ls)	culsiB459
Csa6G408260	Bottle gourd (USVL1VR-Ls)	culsiB465
Csa6G408260	Cucumber (Gy14) v2	cgybcuB281
Csa6G408260	Melon (DHL92) v3.6.1	cumedB472