Csa6G407140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G407140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 18599589 .. 18600041 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCGTATCTCCAAGGCCAAGACTTATGGGATGTGGTAGGAGATACTAAAGTTAACCCACTTAAGGAAATTGTTGCTTTGAAGAACTGGAATGTCAAGGCAGGTAAGGTCATGTTTGCAATCAAAACTACAGTTGATGAAGAAATGTTGGAGCACACATTAGTATTGTTGAGATGCCAAAGAAAGCATGGCATACATGCACCTTACTTTTCTCAAAGAGAAATGATACAAGATTTTAACTTCTAGAGAATGAGCTCTTGTCAATTAATTGATCAAAGGGAGATGACTATCAATAAATATTTCACCAAGGTAAGAGTTCTATATCATGAAATCTGTGAATTAGATTCTACTTCTGTTATTTCAGAATCAAGAATAAGAAGAGTTATTATCTATGGTCTTAAACCTAAACAGAAAAACTTTGTTGCTCCTGTTCAAGGTTGGGAAGTATAA

mRNA sequence

ATGAACTCGTATCTCCAAGGCCAAGACTTATGGGATGTGGTAGGAGATACTAAAGTTAACCCACTTAAGGAAATTGTTGCTTTGAAGAACTGGAATGTCAAGGCAGAATCAAGAATAAGAAGAGTTATTATCTATGGTCTTAAACCTAAACAGAAAAACTTTGTTGCTCCTGTTCAAGGTTGGGAAGTATAA

Coding sequence (CDS)

ATGAACTCGTATCTCCAAGGCCAAGACTTATGGGATGTGGTAGGAGATACTAAAGTTAACCCACTTAAGGAAATTGTTGCTTTGAAGAACTGGAATGTCAAGGCAGAATCAAGAATAAGAAGAGTTATTATCTATGGTCTTAAACCTAAACAGAAAAACTTTGTTGCTCCTGTTCAAGGTTGGGAAGTATAA

Protein sequence

MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQGWEV*
Homology
[Close]
BLAST of Csa6G407140 vs. TrEMBL
Match: A0A0A0KE75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407140 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60
          MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG
Sbjct: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60

Query: 61 WEV 64
          WEV
Sbjct: 61 WEV 63

[Close]
BLAST of Csa6G407140 vs. NCBI nr
Match: gi|700192649|gb|KGN47853.1| (hypothetical protein Csa_6G407140 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60
          MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG
Sbjct: 1  MNSYLQGQDLWDVVGDTKVNPLKEIVALKNWNVKAESRIRRVIIYGLKPKQKNFVAPVQG 60

Query: 61 WEV 64
          WEV
Sbjct: 61 WEV 63

The following BLAST results are available for this feature:
BLAST of Csa6G407140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE75_CUCSA1.4e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407140 PE=4 SV=1[more]
BLAST of Csa6G407140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192649|gb|KGN47853.1|2.0e-28100.00hypothetical protein Csa_6G407140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109445cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G407140.1Csa6G407140.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU109445CU109445transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G407140CSPI06G21690Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G407140Cucurbita moschata (Rifu)cmocuB618
Csa6G407140Melon (DHL92) v3.5.1cumeB492
Csa6G407140Watermelon (Charleston Gray)cuwcgB492
Csa6G407140Watermelon (97103) v1cuwmB485
Csa6G407140Bottle gourd (USVL1VR-Ls)culsiB465
Csa6G407140Cucumber (Gy14) v2cgybcuB281
Csa6G407140Melon (DHL92) v3.6.1cumedB472
Csa6G407140Watermelon (97103) v2cuwmbB486
Csa6G407140Wax gourdcuwgoB568
Csa6G407140Cucumber (Gy14) v1cgycuB197
Csa6G407140Cucurbita maxima (Rimu)cmacuB628