Csa6G403610 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G403610
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Zinc finger HIT domain-containing protein 3; contains IPR007529 (Zinc finger, HIT-type)
Location	Chr6 : 18123150 .. 18126657 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTAGTAAGACAAACAATAAAATTTGTTTTAGGTTGTTTTTGCGTAGTTTTTAATGAAAAGTCTGACCTTCATTCATTTGTGTGCTGGCCTCTTCCTTTCACTTTGCTTGAAGCTGCTCTCTGGTATGTTTTAAGAAACACAAAGGTGCTGTTCTTTTGGACTTAGTTTTTTATTATTGTATTTATGTTCTATAAATTTGTATGAAGTTTCATGTTCAGACGGTCTACTGTTCTAGTTGGCTATTTATTTTGGGATAATTTCATGATGTGGTGAAATCGCTAGTTGTCTAGATCATTGCTACTTGTTCTTTGTTATGAATTTTAACTCACTGCCCAAGTTTAAAGCAGATCATTGTTCTAAGTCCCCTTGCCTGTACTTTTACCTTCTTTAACGGATTAGTTGATGCTAACTGGAGGGTCGGGTATCTGTTTAAGATTTGAATGTACTGGTCATGTTCTTTCAAGTTGAGTTACTCTTGAATGTCTGCTCCAATAAGTGGTTCATAGACTGTTCTTTTACGTTATACATTGGAAGACCTCCAAATTTTAGACTAAGTTAGGAAATTTATTAATTTATCTATTGCGAGCTAGACTCTTGGAGAGATGTTGATCATATTCGATATGCAGAAGTTTAACGTAATCTTGGGCATGAATTGGTTAGTTGCTAACCAAACCACCATCGATTGTGTCAAGAAGGAAACCCCTTGCGGACTGACATATGACCTAAATTAAGTTCAAAGGTGCAATGCATGGAAGTCCAAATGCTGTGAACATTAGCGTAGCATGGGGCTTTGGTGTATTTGTCAAATGTTGTGAATATTTGATGTATCCTAAGTAACCTCAAGGAGAAATCCTCCAAGAACCAAGATTGTGAATCTTTTATGAAAATGAGTAATGTGCTTCATACAAGAGGAGATGACTCATATTTATAGAGTTCTATTACAAGTGGGGGTAAAAAGGAAATTAACCTAGATTATTAGCTAATTACTCAATTAACCCTTAATTTTCTCACATCATTCTACCCCTCCAAAAAGAAAACATGTCCTGAGTTTTAAAAAGAAGAAATTTATGAAGAAAAAGAATGAAATAAACTTGTTCAATGGAGTATGACCAAGCCACCTTGTTCAACAAAGTATGACCAAGCTAATCTCCTACGTTTTGTACAAAAATATTATGATCAAGGGGATAAAATCGAGACAAAAAAATCAGATATGGCGACTAAAAGATGAACCTTTCCATCAGCCGTAAACTCGAAAAAGTTGTTCCTTTAATCTCACTCGAAAATGTATTCAAAGAATCAATCTCAAAAGAATTAGCTTTCGAAGAGTATCCTTGAAGAATCACATTTTCTTTATCATTCCCTTCAAGTTCTTCAACGGTTTGGTAATTCGTTTCCACCGAAACCAATGTGTCGTTCTTATTCGATTTTTGCTTGGTGTTCGATACTTTTTTTTCATCTTCTTTGTTGGATTTTTCTTCACTTGTGACCATATCCAAATCAACTTTTTCAAATTCTTGTTCTTCAATTTTATCTTCAAGATTTTCTATTTGAAAAATTTTCAACCGTGATTCCTTTGTTTTTTCGTCCGTATATGAAACCAATTCCTTCTTGAACTCTTGCAAATGAATTGATAGTTGTATGTTGAGTCATTTCCTCCAATGAGAGTTGAATTTCTTTTGTTGTTTTCTTTATTTCCTCCATTGCTGCAGGATCAAAGTAGTTATTTTGTTGGATTCTTGAATATGTTGCAATCTCATAGCACGTGTAAGACTCATCCATTGATTTTCTTGAATTAACCTTTCTTGATCGTGTTTCATAACCAAAAGAGTAATTTTGAGCCTTGAATGTTCTTCCTGGATGGTTAAAGTCTATTCTTGATGATTTTTTAATTCATCCAACTCCCAATCTTTACATTGATTTCTTGAAAAATGGGTTTGATCGGATTGTTTGGGTCATTTTTTTGACATTGTTGCCTTCTTATTCAGTCCCAAACAGCCTTAGAGAAATCATTGGAGTCACTAGAATCAGTAGAACAAATTTCCAATGTGGATTATGATAGGTTCTTTGAGAAAATTGAGCATGGTCAAAAAGTTTTAATTCATACTTCAGGCAGTTTCCTTTAAATAGTAATTTTCTGTTTGGTTTTAATGACCTTGGTATCGTAATTGAGTTTAAATACTTAAAAAAAAGTTACTGACATTCTCTAATTTAGTCTGAAATTTGGGGGCGTTTCACATGCCATCTGTGGTTAGCATTCAATTCTGTTGCTATGATAACTTGTGTCGTTTGCAACTTGTGCAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAAGTAAGTCTATACTCACGTTTCATTTATTCAAATATGTCATGTATGTCAGGATCGCTCAATAATTGTCTATTTGATTCCTTCCAGATTTTATCCTTGTTCATTCTTTGGGTATTCATCATACTTGCTGACCTTTTTTATTCTTTCCATCTAAAGCTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGGTATTAATTCATATTTACTGATTTTATTACCTCAATTTATACATGATCATATTTGGTCCCAAAAAACACTTGACATGCATTTCTAATTCTTACAAGAGTCAGACGAATTTCAAGGGTTATGTGAGACAGAAATCTTCAAAATCTCATGGTTGCAAAATGTTTACTAGATTAGATCATATGAAAAATCTAGTATATAACAACCTTCTCTCGGACATTTGTTTGGTTAACGTTCTGAAGCTTTGGATAGGAAAATATCATTTGAGAAGGGATCAAGTTTGGAAGGTTGGACGTGACAATTTGTATGTCAAGGCGAAACTAGGAATGGAAACTATGTTTTATCACATTTTTATTTACGCATCAAGAATAATTTTGTTGCTAGTTGTAAAAGCATTATTGAACTTACAATCTAGGTTTCTACGCATCTTTCTTACAGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGTGAGTATTTTGCATCTTCCATTGCGTGAGGAATTATACTCCTAACCAACTTCTTGCTCCATTATAGTCATCATCTACGAACGGTTGTAAATGTGAATATCAATAGTTAAAAACGTTTGTTTAAGTTGGTTGTTGTTCTTATTAGGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGGTACTATTTTTAATATCTTTTATCATCTGTGACTTGTGATGCAGTCGTCATGAGCATGCCGGATAAATATTTTCGTTTGTTTTAAGCATTTATTCTCTCTGTTGGTTAGATATCATCCATCATCAACTCTTAG

mRNA sequence

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTATGTTTTAAGAAACACAAAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAACTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACTCTTAG

Coding sequence (CDS)

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTATGTTTTAAGAAACACAAAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAACTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACTGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACTCTTAG

Protein sequence

MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS*

Homology

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BLAST of Csa6G403610 vs. Swiss-Prot
Match: ZNHI3_HUMAN (Zinc finger HIT domain-containing protein 3 OS=Homo sapiens GN=ZNHIT3 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-07
Identity = 36/143 (25.17%), Postives = 64/143 (44.76%), Query Frame = 1


Query: 6   CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGD 65
           C +C E P KY+CP C  PYCS+VCF+KHKE                +P   +KPV   D
Sbjct: 11  CVICLEKP-KYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKD 70

Query: 66  QSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPE 125
              +    F++      ++ + +    L+ +  S+ + ++L +  L++ ++ +D   D  
Sbjct: 71  DDDSI-ADFLNS----DEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDKA 130

Query: 126 TEVDKAMEDEAFRIFSSKISSII 132
             +   M++  F  F+     I+
Sbjct: 131 KLMRAYMQEPLFVEFADCCLGIV 147

[Close]

BLAST of Csa6G403610 vs. Swiss-Prot
Match: ZNHI3_MOUSE (Zinc finger HIT domain-containing protein 3 OS=Mus musculus GN=Znhit3 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-06
Identity = 33/136 (24.26%), Postives = 63/136 (46.32%), Query Frame = 1


Query: 6   CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIK----------PVSEGDQSTACNG 65
           C VC E P KY+CP C  PYCS+ CF+KHKE  C+ +          P    ++S   + 
Sbjct: 11  CVVCLEKP-KYRCPTCRVPYCSVPCFQKHKE-QCSSEARPVEKRRAGPPVRSEESKDDDS 70

Query: 66  TFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAM 125
           +  D  +   ++ + +    L+ +  S  + ++L +  L++ ++++D   +    +   M
Sbjct: 71  SVADF-LNSDEEEDRVSLQNLKNLGESETLRSLLLNPHLRQLMISLDQGDNKAKLMRACM 130

Query: 126 EDEAFRIFSSKISSII 132
           ++  F  F+     I+
Sbjct: 131 QEPLFVEFADCCLGIV 143

[Close]

BLAST of Csa6G403610 vs. Swiss-Prot
Match: ZNHI3_BOVIN (Zinc finger HIT domain-containing protein 3 OS=Bos taurus GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-06
Identity = 23/39 (58.97%), Postives = 23/39 (58.97%), Query Frame = 1


Query: 6  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPV 45
          C VC E P KY+CP C  PYCSL CF+KHK  P    PV
Sbjct: 11 CVVCLEKP-KYRCPACRVPYCSLPCFRKHKAPPLQQLPV 48

[Close]

BLAST of Csa6G403610 vs. Swiss-Prot
Match: ZNHI3_MACMU (Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta GN=ZNHIT3 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-06
Identity = 35/143 (24.48%), Postives = 62/143 (43.36%), Query Frame = 1


Query: 6   CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGD 65
           C +C E P KY+CP C  PYCS+ CF+KHKE                +P    KPV   D
Sbjct: 3   CVICLEKP-KYRCPACRVPYCSVACFRKHKEQCNPEARPVEKKIRSALPTKTXKPVENKD 62

Query: 66  QSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPE 125
              +    F++      ++ + +    L+ +  S+ + ++L +  L++ ++ +D   D  
Sbjct: 63  DDDSI-ADFLNS----DEEEDRVSLQNLKNLGKSATLRSLLLNPHLRQLMVNLDQGEDKA 122

Query: 126 TEVDKAMEDEAFRIFSSKISSII 132
             +   M++  F  F+     I+
Sbjct: 123 KLMRAYMQEPLFVEFADCCLGIV 139

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BLAST of Csa6G403610 vs. TrEMBL
Match: A0A0A0KDK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403610 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR
Sbjct: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 134
           RIFSSKISSIINS
Sbjct: 121 RIFSSKISSIINS 133

[Close]

BLAST of Csa6G403610 vs. TrEMBL
Match: K7LZG3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G130200 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.9e-37
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCN+  SKYKCP C  PYCSLVCFKKHKE PC +KP     ++TA + +FV++
Sbjct: 1   MGPRQCQVCNQTQSKYKCPSCYLPYCSLVCFKKHKESPC-VKPQPSETKATAVSESFVEK 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           P+   + +EVL+K QLEAIASSSEI + LNDE LQ+ I  ID S + E E+DKAM +EAF
Sbjct: 61  PLVADESSEVLQKFQLEAIASSSEIRDALNDEALQELICRIDGSSNAENELDKAMAEEAF 120

Query: 121 RIFSSKISSIIN 133
           R+F+ KI S IN
Sbjct: 121 RLFTDKILSTIN 131

[Close]

BLAST of Csa6G403610 vs. TrEMBL
Match: C6T4W0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G042900 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-36
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEA SKYKCP C  PYCSLVCFKKHKE+PC +KP     ++TA + +  ++
Sbjct: 1   MGPRQCQVCNEAQSKYKCPSCYLPYCSLVCFKKHKELPC-VKPQPSEAKTTAVSESIAEK 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           P+ V + +EVLEK QLEAIASSSEI + LND+ LQ+ I  ID S + E E+DKAM +EAF
Sbjct: 61  PLVVDESSEVLEKFQLEAIASSSEIRDALNDKALQELICRIDCSSNAENELDKAMAEEAF 120

Query: 121 RIFSSKISSIIN 133
           R+ + KI S IN
Sbjct: 121 RLLTDKILSTIN 131

[Close]

BLAST of Csa6G403610 vs. TrEMBL
Match: A0A0B2PEI8_GLYSO (Zinc finger HIT domain-containing protein 3 OS=Glycine soja GN=glysoja_026497 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.2e-35
Identity = 76/133 (57.14%), Postives = 97/133 (72.93%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCNEA SKYKCP C  PYCSLVCFKKHKE+PC +KP     ++TA + +  ++
Sbjct: 1   MGPRQCQVCNEAQSKYKCPSCYLPYCSLVCFKKHKELPC-VKPQPSEAKTTAVSESIAEK 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           P+ V + +EVLEK QLEAIASSSEI + LND+ LQ+ I  ID S + E E+DKAM +EAF
Sbjct: 61  PLVVDESSEVLEKFQLEAIASSSEIRDALNDKALQELICRIDCSSNAENELDKAMAEEAF 120

Query: 121 RIFSSKISSIINS 134
           R+ + K+   I S
Sbjct: 121 RLLTDKVMLYIAS 132

[Close]

BLAST of Csa6G403610 vs. TrEMBL
Match: A0A022S363_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016147mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-34
Identity = 72/134 (53.73%), Postives = 101/134 (75.37%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQST-ACNGTFVD 60
           MAP+KC+VC+++ SKYKCP CL PYCSL CFKKHK +PC  KP S  ++   +     +D
Sbjct: 1   MAPKKCEVCDKSQSKYKCPTCLIPYCSLACFKKHKVIPCT-KPESVNEEKVHSVPARNID 60

Query: 61  RPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEA 120
           +P CV +Q+EVL++SQL++IASS++I + + DEKLQK I  ID S +PE+E+D+AM DE+
Sbjct: 61  KPCCVDEQSEVLQESQLQSIASSNDIRDSVKDEKLQKLIRDIDCSANPESELDRAMNDES 120

Query: 121 FRIFSSKISSIINS 134
           FR+F+ KI S I +
Sbjct: 121 FRLFTEKILSTIGT 133

[Close]

BLAST of Csa6G403610 vs. TAIR10
Match: AT4G28820.1 (AT4G28820.1 HIT-type Zinc finger family protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-25
Identity = 71/164 (43.29%), Postives = 83/164 (50.61%), Query Frame = 1


Query: 2   APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKP-----VSEGDQSTACNGT 61
           A + C++C +  SKYKCP CL PYCSL CFK HKE PCA KP       E   ++     
Sbjct: 5   ATQTCEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCA-KPSDPSSTEEKPAASPAKEV 64

Query: 62  FVDRPICVGDQNE----------------------------VLEKSQLEAIASSSEIHNI 121
            V RP    D  E                            +LEK+Q EAIASSSEI   
Sbjct: 65  PVKRPEEANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIREA 124

Query: 122 LNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN 133
           L DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Sbjct: 125 LKDEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSNIS 167

[Close]

BLAST of Csa6G403610 vs. NCBI nr
Match: gi|449458039|ref|XP_004146755.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.5e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR
Sbjct: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 134
           RIFSSKISSIINS
Sbjct: 121 RIFSSKISSIINS 133

[Close]

BLAST of Csa6G403610 vs. NCBI nr
Match: gi|659129664|ref|XP_008464779.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 9.6e-65
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDR
Sbjct: 1   MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILAIDSS DPETE+DKAMEDEAF
Sbjct: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAF 120

Query: 121 RIFSSKISSIINS 134
           RIFSSKISSII+S
Sbjct: 121 RIFSSKISSIISS 133

[Close]

BLAST of Csa6G403610 vs. NCBI nr
Match: gi|778715922|ref|XP_011657478.1| (PREDICTED: uncharacterized protein LOC101208978 isoform X2 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 6.9e-47
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 34  HKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEK 93
           H +VPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEK
Sbjct: 14  HLKVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEK 73

Query: 94  LQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS 134
           LQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
Sbjct: 74  LQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS 113

[Close]

BLAST of Csa6G403610 vs. NCBI nr
Match: gi|659129668|ref|XP_008464781.1| (PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 1


Query: 34  HKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEK 93
           H +VPCAIKPVSE DQSTA NG+FVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEK
Sbjct: 14  HLKVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEK 73

Query: 94  LQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIINS 134
           L+KFILAIDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Sbjct: 74  LRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSIISS 113

[Close]

BLAST of Csa6G403610 vs. NCBI nr
Match: gi|1009132492|ref|XP_015883402.1| (PREDICTED: zinc finger HIT domain-containing protein 3 [Ziziphus jujuba])

HSP 1 Score: 162.5 bits (410), Expect = 5.0e-37
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 1   MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDR 60
           M PR+CQVCN+A SKYKCP CLAPYCSL CFKKHKE+PC+ KP+S   +    + + + R
Sbjct: 1   MGPRQCQVCNDAVSKYKCPSCLAPYCSLTCFKKHKEIPCS-KPLSSEPKLATGSESLIGR 60

Query: 61  PICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAF 120
           P+ V   +EVL++SQLEAIA+SSEI N L DE LQK I  ID SPD E E+DKAM+ E+F
Sbjct: 61  PLSVHKPSEVLQRSQLEAIATSSEIRNALKDENLQKLISKIDCSPDAENELDKAMDSESF 120

Query: 121 RIFSSKISSIIN 133
           RI + KI S I+
Sbjct: 121 RILTDKILSTIS 131

The following BLAST results are available for this feature:

BLAST of Csa6G403610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZNHI3_HUMAN	7.0e-07	25.17	Zinc finger HIT domain-containing protein 3 OS=Homo sapiens GN=ZNHIT3 PE=1 SV=2	[more]
ZNHI3_MOUSE	3.5e-06	24.26	Zinc finger HIT domain-containing protein 3 OS=Mus musculus GN=Znhit3 PE=1 SV=1	[more]
ZNHI3_BOVIN	4.5e-06	58.97	Zinc finger HIT domain-containing protein 3 OS=Bos taurus GN=ZNHIT3 PE=2 SV=1	[more]
ZNHI3_MACMU	5.9e-06	24.48	Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta GN=ZNHI...	[more]

BLAST of Csa6G403610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK5_CUCSA	1.1e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403610 PE=4 SV=1	[more]
K7LZG3_SOYBN	5.9e-37	59.09	Uncharacterized protein OS=Glycine max GN=GLYMA_13G130200 PE=4 SV=1	[more]
C6T4W0_SOYBN	2.2e-36	59.09	Uncharacterized protein OS=Glycine max GN=GLYMA_10G042900 PE=2 SV=1	[more]
A0A0B2PEI8_GLYSO	3.2e-35	57.14	Zinc finger HIT domain-containing protein 3 OS=Glycine soja GN=glysoja_026497 PE...	[more]
A0A022S363_ERYGU	1.6e-34	53.73	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016147mg PE=4 SV=1	[more]

BLAST of Csa6G403610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28820.1	3.5e-25	43.29	HIT-type Zinc finger family protein	[more]

BLAST of Csa6G403610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458039\|ref\|XP_004146755.1\|	1.5e-70	100.00	PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis sativ...	[more]
gi\|659129664\|ref\|XP_008464779.1\|	9.6e-65	93.98	PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]	[more]
gi\|778715922\|ref\|XP_011657478.1\|	6.9e-47	98.00	PREDICTED: uncharacterized protein LOC101208978 isoform X2 [Cucumis sativus]	[more]
gi\|659129668\|ref\|XP_008464781.1\|	1.5e-41	91.00	PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]	[more]
gi\|1009132492\|ref\|XP_015883402.1\|	5.0e-37	59.85	PREDICTED: zinc finger HIT domain-containing protein 3 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007529	Znf_HIT

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU114528	cucumber EST collection version 3.0	transcribed_cluster
CU122851	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G403610.1	Csa6G403610.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU122851	CU122851	transcribed_cluster
CU114528	CU114528	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 4..32 score: 4.1
IPR007529	Zinc finger, HIT-type	PROFILE	PS51083	ZF_HIT	coord: 6..39 score: 11
None	No IPR available	PANTHER	PTHR13483	UNCHARACTERIZED	coord: 1..132 score: 5.5
None	No IPR available	PANTHER	PTHR13483:SF8	SUBFAMILY NOT NAMED	coord: 1..132 score: 5.5
None	No IPR available	unknown	SSF144232	HIT/MYND zinc finger-like	coord: 4..37 score: 1.92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G403610	MELO3C026499	Melon (DHL92) v3.5.1	cumeB475
Csa6G403610	MELO3C026499.2	Melon (DHL92) v3.6.1	cumedB457
Csa6G403610	CSPI06G21120	Wild cucumber (PI 183967)	cpicuB313
Csa6G403610	Cucsa.005410	Cucumber (Gy14) v1	cgycuB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G403610	Silver-seed gourd	carcuB0147
Csa6G403610	Silver-seed gourd	carcuB0235
Csa6G403610	Watermelon (97103) v2	cuwmbB499
Csa6G403610	Wax gourd	cuwgoB582
Csa6G403610	Wax gourd	cuwgoB592
Csa6G403610	Cucurbita maxima (Rimu)	cmacuB193
Csa6G403610	Cucurbita maxima (Rimu)	cmacuB198
Csa6G403610	Cucurbita maxima (Rimu)	cmacuB807
Csa6G403610	Cucurbita moschata (Rifu)	cmocuB178
Csa6G403610	Cucurbita moschata (Rifu)	cmocuB182
Csa6G403610	Cucurbita moschata (Rifu)	cmocuB798
Csa6G403610	Watermelon (Charleston Gray)	cuwcgB508
Csa6G403610	Watermelon (97103) v1	cuwmB469
Csa6G403610	Cucurbita pepo (Zucchini)	cpecuB121
Csa6G403610	Cucurbita pepo (Zucchini)	cpecuB838
Csa6G403610	Cucurbita pepo (Zucchini)	cpecuB844
Csa6G403610	Bottle gourd (USVL1VR-Ls)	culsiB479
Csa6G403610	Cucumber (Gy14) v2	cgybcuB281