Csa6G401480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G401480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17969854 .. 17970378 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACCAATTTCTAAACCCTTTCCTTCTCCTTTCCTTTCCCTTTCCCTTGTTTTCCTCCGCCACCCTCCGCCTCCCCCTCCCCTTACTCTCCGGCGCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTCCTCCACCTCCACCTTTGTATTTGTATTCTCCATTATTATGATCATAATTACAATACTCCTTCTTCCATATTCCCTTCTTTCTCTCCTCTCACTTTCCCCCCGTACAATTCCACCTTCTTCCTACGGTCCCTAGATCTCTCTCTCTCTCTCTCTGCCCTCATCACTGACCTCCTCTTCCCCTCTCCCCTGTTCCTCTTTGGCCCATCTCCACCCCTCGCTTTCTTTCTTTCTCGCTCATTTCTAGGGTTTCCCCTTTCCAATTATGATCACTCTTATTGGGTTTGATCCTTTCTCTTCTGCCTTCCTCTCACTTTTTCCTGTTTCTCTTCATCATTCCTCTCCTACCCTTTTCCTCCCCATTCAATTCTTTTCAATTTCCTCCTGA

mRNA sequence

ATGAAAAACCAATTTCTAAACCCTTTCCTTCTCCTTTCCTTTCCCTTTCCCTTGTTTTCCTCCGCCACCCTCCGCCTCCCCCTCCCCTTACTCTCCGGCGCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTCCTCCACCTCCACCTTTGGTTTCCCCTTTCCAATTATGATCACTCTTATTGGGTTTGATCCTTTCTCTTCTGCCTTCCTCTCACTTTTTCCTGTTTCTCTTCATCATTCCTCTCCTACCCTTTTCCTCCCCATTCAATTCTTTTCAATTTCCTCCTGA

Coding sequence (CDS)

ATGAAAAACCAATTTCTAAACCCTTTCCTTCTCCTTTCCTTTCCCTTTCCCTTGTTTTCCTCCGCCACCCTCCGCCTCCCCCTCCCCTTACTCTCCGGCGCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCACCACCTCCTCCACCTCCACCTTTGGTTTCCCCTTTCCAATTATGATCACTCTTATTGGGTTTGATCCTTTCTCTTCTGCCTTCCTCTCACTTTTTCCTGTTTCTCTTCATCATTCCTCTCCTACCCTTTTCCTCCCCATTCAATTCTTTTCAATTTCCTCCTGA

Protein sequence

MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMITLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS*
Homology
[Close]
BLAST of Csa6G401480 vs. TrEMBL
Match: A0A0A0KDZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401480 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMI 60
          MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMI
Sbjct: 1  MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMI 60

Query: 61 TLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS 99
          TLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS
Sbjct: 61 TLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS 98

[Close]
BLAST of Csa6G401480 vs. NCBI nr
Match: gi|700192574|gb|KGN47778.1| (hypothetical protein Csa_6G401480 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMI 60
          MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMI
Sbjct: 1  MKNQFLNPFLLLSFPFPLFSSATLRLPLPLLSGAAVSSSSSSSSTTSSTSTFGFPFPIMI 60

Query: 61 TLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS 99
          TLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS
Sbjct: 61 TLIGFDPFSSAFLSLFPVSLHHSSPTLFLPIQFFSISS 98

The following BLAST results are available for this feature:
BLAST of Csa6G401480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDZ6_CUCSA2.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401480 PE=4 SV=1[more]
BLAST of Csa6G401480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192574|gb|KGN47778.1|3.3e-46100.00hypothetical protein Csa_6G401480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G401480.1Csa6G401480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G401480CSPI06G20940Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G401480Cucurbita maxima (Rimu)cmacuB807
Csa6G401480Cucurbita moschata (Rifu)cmocuB178
Csa6G401480Cucurbita moschata (Rifu)cmocuB798
Csa6G401480Melon (DHL92) v3.5.1cumeB475
Csa6G401480Watermelon (Charleston Gray)cuwcgB508
Csa6G401480Watermelon (97103) v1cuwmB469
Csa6G401480Cucurbita pepo (Zucchini)cpecuB121
Csa6G401480Cucurbita pepo (Zucchini)cpecuB838
Csa6G401480Bottle gourd (USVL1VR-Ls)culsiB479
Csa6G401480Cucumber (Gy14) v2cgybcuB281
Csa6G401480Melon (DHL92) v3.6.1cumedB457
Csa6G401480Silver-seed gourdcarcuB0235
Csa6G401480Watermelon (97103) v2cuwmbB499
Csa6G401480Wax gourdcuwgoB582
Csa6G401480Cucumber (Gy14) v1cgycuB051
Csa6G401480Cucurbita maxima (Rimu)cmacuB193