Csa6G399220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G399220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17713586 .. 17713939 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAGAATGGTCATAAAGCTATTCAGTTTGTTGAGCCTTCCTATCGAAGTAGTTCAGCTTGTGTTTTCTCACTTCCTCGTACAATCAACAATTGTTGGGATTGTGGGGAAGCTTGTTTTGATCATTATTTGGATGTTGTTGCTTTCATTCTTCCTTTTGGTCAGCCTTGTGGCTCAAACTGTGCTATATTTTGTGTGCAAATCATACCACCAGGAGCTTGCTGAAAAGTTGTCTATCTCGGATCGTCTTCAAAGGTACCTACTCACACACTATGACCCGTTGAAGGTAGAGGATGATGTTCCTACTGAGAAATTACAAATTGTTTAAGATAATAATACTTGGAATAACTATAT

mRNA sequence

ATGAGAATGGTCATAAAGCTATTCAGTTTGTTGAGCCTTCCTATCGAAGTAGTTCAGCTTGTGTTTTCTCACTTCCTCGTACAATCAACAATTGTTGGGATTGTGGGGAAGCTTGTTTTGATCATTATTTGGATGTTGTTGCTTTCATTCTTCCTTTTGGTCAGCCTTGTGGCTCAAACTGTGCTATATTTTGTGTGCAAATCATACCACCAGGAGCTTGCTGAAAAGTTGTCTATCTCGGATCGTCTTCAAAGGTACCTACTCACACACTATGACCCGTTGAAGGTAGAGGATGATGTTCCTACTGAGAAATTACAAATTGTTTAA

Coding sequence (CDS)

ATGAGAATGGTCATAAAGCTATTCAGTTTGTTGAGCCTTCCTATCGAAGTAGTTCAGCTTGTGTTTTCTCACTTCCTCGTACAATCAACAATTGTTGGGATTGTGGGGAAGCTTGTTTTGATCATTATTTGGATGTTGTTGCTTTCATTCTTCCTTTTGGTCAGCCTTGTGGCTCAAACTGTGCTATATTTTGTGTGCAAATCATACCACCAGGAGCTTGCTGAAAAGTTGTCTATCTCGGATCGTCTTCAAAGGTACCTACTCACACACTATGACCCGTTGAAGGTAGAGGATGATGTTCCTACTGAGAAATTACAAATTGTTTAA

Protein sequence

MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQTVLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV*
Homology
[Close]
BLAST of Csa6G399220 vs. TrEMBL
Match: A0A0A0KIZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399220 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.8e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60
           MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT
Sbjct: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60

Query: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 109
           VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV
Sbjct: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 108

[Close]
BLAST of Csa6G399220 vs. TrEMBL
Match: A0A0A0KDW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-15
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 11  LSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQTVLYFVCKSYH 70
           LSLP+  V+ VF H +V+++ +GI+ K  L I+  LL   F L+ LV +TVLYFVCKSYH
Sbjct: 243 LSLPLGTVRFVFGHLVVRTSSLGILSKGTLGILCFLLFFIFFLLKLVTETVLYFVCKSYH 302

Query: 71  QELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQI 108
            E  +K ++SD L+ YLL  Y PL+   DV  EK Q+
Sbjct: 303 HENIDKSALSDHLEVYLLGEYVPLRPR-DVQLEKFQV 338

[Close]
BLAST of Csa6G399220 vs. TrEMBL
Match: A0A0A0KFW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60
           M+MVIKL+ LL  P+ V+Q    H+ V  +    VG  +L I W+L    F+LV LV +T
Sbjct: 239 MKMVIKLWVLLDFPLGVIQFALLHYFVTRSTW--VGWSILGICWVLSFMVFVLVKLVLET 298

Query: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLT-HYDPLKVEDD---VPTEKLQIV 109
           V+YFVCK +H E+ + + + + LQ Y+L  HYD LKV+DD   V  EK+Q V
Sbjct: 299 VVYFVCKLHHGEMVDMMPLWNHLQGYVLPHHYDQLKVDDDNNSVQLEKIQAV 348

[Close]
BLAST of Csa6G399220 vs. TrEMBL
Match: A0A061FGQ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035327 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 3   MVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQTVL 62
           + + +F  LS+ + ++Q+ F + +V  +  G+V ++   II  LLL   +L  LV QTV+
Sbjct: 230 VAVVIFFKLSVSLFIIQIAFQNLVVHGSTFGVVSRVAYAIICFLLLCKLILFGLVIQTVI 289

Query: 63  YFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVED 99
           YFVCKSYH E  +K ++SD L+ Y L  Y PLK +D
Sbjct: 290 YFVCKSYHHENIDKSALSDHLEVY-LGEYVPLKAKD 324

[Close]
BLAST of Csa6G399220 vs. TrEMBL
Match: A0A0D2SD17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G084100 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 3   MVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQTVL 62
           + I +F  L + + ++Q  F   +V  + +GI  ++V  II  LLLS  +L  LV QTV+
Sbjct: 229 VAIIIFLKLIISLVIIQAAFQSLVVHGSSLGIAMRVVYAIICFLLLSKLILFVLVIQTVI 288

Query: 63  YFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQI 108
           YFVCKSYH E  +K ++SD L+ Y L  Y PLK + DV  E+ Q+
Sbjct: 289 YFVCKSYHHENIDKSALSDHLEVY-LGEYVPLKAK-DVQLEQFQV 331

[Close]
BLAST of Csa6G399220 vs. NCBI nr
Match: gi|778722281|ref|XP_011658451.1| (PREDICTED: uncharacterized protein LOC105436010 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 8.4e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60
           MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT
Sbjct: 51  MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 110

Query: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 109
           VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV
Sbjct: 111 VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 158

[Close]
BLAST of Csa6G399220 vs. NCBI nr
Match: gi|700192542|gb|KGN47746.1| (hypothetical protein Csa_6G399220 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 8.4e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60
           MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT
Sbjct: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60

Query: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 109
           VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV
Sbjct: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 108

[Close]
BLAST of Csa6G399220 vs. NCBI nr
Match: gi|659133528|ref|XP_008466772.1| (PREDICTED: uncharacterized protein LOC103504102 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 6.0e-41
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 1 

Query: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60
           MRMVIKLF +LS P+EVVQLVFS  L+QSTI+GIVGKLVLIIIWMLL+S FLLVSLVAQT
Sbjct: 51  MRMVIKLFIVLSFPMEVVQLVFSRLLIQSTIIGIVGKLVLIIIWMLLISLFLLVSLVAQT 110

Query: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQIV 109
           VLYFVCKSYHQ+LAEKLSISD LQRYLL  YDPLKVED V TE LQIV
Sbjct: 111 VLYFVCKSYHQKLAEKLSISDHLQRYLLADYDPLKVEDAVRTENLQIV 158

[Close]
BLAST of Csa6G399220 vs. NCBI nr
Match: gi|778715735|ref|XP_011657442.1| (PREDICTED: uncharacterized protein LOC105435860 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-15
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 11  LSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQTVLYFVCKSYH 70
           LSLP+  V+ VF H +V+++ +GI+ K  L I+  LL   F L+ LV +TVLYFVCKSYH
Sbjct: 243 LSLPLGTVRFVFGHLVVRTSSLGILSKGTLGILCFLLFFIFFLLKLVTETVLYFVCKSYH 302

Query: 71  QELAEKLSISDRLQRYLLTHYDPLKVEDDVPTEKLQI 108
            E  +K ++SD L+ YLL  Y PL+   DV  EK Q+
Sbjct: 303 HENIDKSALSDHLEVYLLGEYVPLRPR-DVQLEKFQV 338

[Close]
BLAST of Csa6G399220 vs. NCBI nr
Match: gi|778722278|ref|XP_011658450.1| (PREDICTED: uncharacterized protein LOC105436009 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60
           M+MVIKL+ LL  P+ V+Q    H+ V  +    VG  +L I W+L    F+LV LV +T
Sbjct: 107 MKMVIKLWVLLDFPLGVIQFALLHYFVTRSTW--VGWSILGICWVLSFMVFVLVKLVLET 166

Query: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLT-HYDPLKVEDD---VPTEKLQIV 109
           V+YFVCK +H E+ + + + + LQ Y+L  HYD LKV+DD   V  EK+Q V
Sbjct: 167 VVYFVCKLHHGEMVDMMPLWNHLQGYVLPHHYDQLKVDDDNNSVQLEKIQAV 216

The following BLAST results are available for this feature:
BLAST of Csa6G399220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIZ1_CUCSA5.8e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399220 PE=4 SV=1[more]
A0A0A0KDW0_CUCSA4.0e-1548.45Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398200 PE=4 SV=1[more]
A0A0A0KFW2_CUCSA1.5e-1444.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1[more]
A0A061FGQ7_THECC1.2e-1140.63Uncharacterized protein OS=Theobroma cacao GN=TCM_035327 PE=4 SV=1[more]
A0A0D2SD17_GOSRA2.7e-1141.90Uncharacterized protein OS=Gossypium raimondii GN=B456_005G084100 PE=4 SV=1[more]
BLAST of Csa6G399220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722281|ref|XP_011658451.1|8.4e-51100.00PREDICTED: uncharacterized protein LOC105436010 [Cucumis sativus][more]
gi|700192542|gb|KGN47746.1|8.4e-51100.00hypothetical protein Csa_6G399220 [Cucumis sativus][more]
gi|659133528|ref|XP_008466772.1|6.0e-4184.26PREDICTED: uncharacterized protein LOC103504102 [Cucumis melo][more]
gi|778715735|ref|XP_011657442.1|5.7e-1548.45PREDICTED: uncharacterized protein LOC105435860 [Cucumis sativus][more]
gi|778722278|ref|XP_011658450.1|2.2e-1444.64PREDICTED: uncharacterized protein LOC105436009 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G399220.1Csa6G399220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33133FAMILY NOT NAMEDcoord: 1..106
score: 3.2
NoneNo IPR availablePANTHERPTHR33133:SF5EXPRESSED PROTEINcoord: 1..106
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G399220Bhi04G001723Wax gourdcuwgoB584
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G399220Cucumber (Gy14) v1cgycuB051
Csa6G399220Melon (DHL92) v3.5.1cumeB477
Csa6G399220Cucumber (Gy14) v2cgybcuB281