Csa6G397160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G397160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 17605473 .. 17605784 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

mRNA sequence

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

Coding sequence (CDS)

ATGGCACTAAGATATGGTCAGTGCATGGTTGGGCAACAGAAGGTTTCATGCGTGCACACAGACCCCATCAGGGTGCCAAGCCACATCCTAACCTCACGTTGGTATTTTCGTGTGTCCACCATGGGCGCATGGCTAAGCTGTGTGTTGGCCTTTGTTCCCGAGACCCTATCGCATAGCCTTGGGGCGCACCTCATACTGCCTAACTATGTGTTGGGCTATGTCTTACGCTTTCTCAATGCCACAACTCACCCTCTTGCGTCCACCATCTTCCTCTCAAATGGCCAATGTTCAAAACGGTTGCCCCTCTGCTGA

Protein sequence

MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSLGAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC*

Homology

[Close]

BLAST of Csa6G397160 vs. TrEMBL
Match: A0A0A0KIY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397160 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.2e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60
           MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL
Sbjct: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60

Query: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 104
           GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Sbjct: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 103

[Close]

BLAST of Csa6G397160 vs. NCBI nr
Match: gi|700192532|gb|KGN47736.1| (hypothetical protein Csa_6G397160 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60
           MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL
Sbjct: 1   MALRYGQCMVGQQKVSCVHTDPIRVPSHILTSRWYFRVSTMGAWLSCVLAFVPETLSHSL 60

Query: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 104
           GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC
Sbjct: 61  GAHLILPNYVLGYVLRFLNATTHPLASTIFLSNGQCSKRLPLC 103

The following BLAST results are available for this feature:

BLAST of Csa6G397160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIY0_CUCSA	9.2e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397160 PE=4 SV=1	[more]

BLAST of Csa6G397160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192532\|gb\|KGN47736.1\|	1.3e-53	100.00	hypothetical protein Csa_6G397160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G397160.1	Csa6G397160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G397160	Wax gourd	cuwgoB584
Csa6G397160	Cucumber (Gy14) v1	cgycuB263
Csa6G397160	Cucurbita maxima (Rimu)	cmacuB037
Csa6G397160	Cucurbita moschata (Rifu)	cmocuB027
Csa6G397160	Melon (DHL92) v3.5.1	cumeB477
Csa6G397160	Cucurbita pepo (Zucchini)	cpecuB796
Csa6G397160	Bottle gourd (USVL1VR-Ls)	culsiB485
Csa6G397160	Cucumber (Gy14) v2	cgybcuB281
Csa6G397160	Melon (DHL92) v3.6.1	cumedB449
Csa6G397160	Melon (DHL92) v3.6.1	cumedB460