Csa6G383560 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G383560
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17403256 .. 17403539 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGTGTTCGAATTGCAGGTGACCGACGACGTGGTTCGCGTGTAGAGATGATCAACGTTCGGATTACAGGCGTTCGGGTCTCATTCGCGTGAAGAGTTGGTCGGCGTTCGGATTGTAGGTGAGCAGCATCGTTTGCGTGCAGATTATCGTGGGTGGTTGTTCGCATGGTGGTTCGGATTGTGGATGGCAGCTGGTGAGTGGTGGTTTGGATGGCAGCTGCTGGGTGGTCGATGGCTGGTGGCTGGGCAGCGACTTAAGTGGTGGGGTGGGTGTCCTTTAG

mRNA sequence

ATGGCTGGTGTTCGAATTGCAGGTGACCGACGACGTGGTTCGCGTGTAGAGATGATCAACGTTCGGATTACAGGCGTTCGGGTGAGCAGCATCGTTTGCGTGCAGATTATCGTGGGTGGTTGTTCGCATGGTGGTTCGGATTGTGGATGGCAGCTGGTGAGTGGTGGTTTGGATGGCAGCTGCTGGGTGGTCGATGGCTGGTGGCTGGGCAGCGACTTAAGTGGTGGGGTGGGTGTCCTTTAG

Coding sequence (CDS)

ATGGCTGGTGTTCGAATTGCAGGTGACCGACGACGTGGTTCGCGTGTAGAGATGATCAACGTTCGGATTACAGGCGTTCGGGTGAGCAGCATCGTTTGCGTGCAGATTATCGTGGGTGGTTGTTCGCATGGTGGTTCGGATTGTGGATGGCAGCTGGTGAGTGGTGGTTTGGATGGCAGCTGCTGGGTGGTCGATGGCTGGTGGCTGGGCAGCGACTTAAGTGGTGGGGTGGGTGTCCTTTAG

Protein sequence

MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGSCWVVDGWWLGSDLSGGVGVL*
Homology
[Close]
BLAST of Csa6G383560 vs. TrEMBL
Match: A0A0A0KFT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383560 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.7e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS 60
          MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS
Sbjct: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS 60

Query: 61 CWVVDGWWLGSDLSGGVGVL 81
          CWVVDGWWLGSDLSGGVGVL
Sbjct: 61 CWVVDGWWLGSDLSGGVGVL 80

[Close]
BLAST of Csa6G383560 vs. NCBI nr
Match: gi|700192515|gb|KGN47719.1| (hypothetical protein Csa_6G383560 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS 60
          MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS
Sbjct: 1  MAGVRIAGDRRRGSRVEMINVRITGVRVSSIVCVQIIVGGCSHGGSDCGWQLVSGGLDGS 60

Query: 61 CWVVDGWWLGSDLSGGVGVL 81
          CWVVDGWWLGSDLSGGVGVL
Sbjct: 61 CWVVDGWWLGSDLSGGVGVL 80

The following BLAST results are available for this feature:
BLAST of Csa6G383560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFT9_CUCSA7.7e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383560 PE=4 SV=1[more]
BLAST of Csa6G383560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192515|gb|KGN47719.1|1.1e-39100.00hypothetical protein Csa_6G383560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G383560.1Csa6G383560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G383560CSPI06G20330Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G383560Watermelon (97103) v2cuwmbB497
Csa6G383560Wax gourdcuwgoB572
Csa6G383560Cucumber (Gy14) v1cgycuB289
Csa6G383560Cucurbita maxima (Rimu)cmacuB310
Csa6G383560Cucurbita maxima (Rimu)cmacuB769
Csa6G383560Cucurbita moschata (Rifu)cmocuB298
Csa6G383560Cucurbita moschata (Rifu)cmocuB761
Csa6G383560Melon (DHL92) v3.5.1cumeB477
Csa6G383560Watermelon (Charleston Gray)cuwcgB506
Csa6G383560Watermelon (97103) v1cuwmB467
Csa6G383560Cucurbita pepo (Zucchini)cpecuB199
Csa6G383560Cucurbita pepo (Zucchini)cpecuB461
Csa6G383560Bottle gourd (USVL1VR-Ls)culsiB480
Csa6G383560Cucumber (Gy14) v2cgybcuB281
Csa6G383560Melon (DHL92) v3.6.1cumedB449
Csa6G383560Silver-seed gourdcarcuB0478
Csa6G383560Silver-seed gourdcarcuB0851