Csa6G383550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G383550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR004252 (Transposase, Ptta/En/Spm, plant)
LocationChr6 : 17399675 .. 17400808 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGAAGCTCTGAATATATTAACTGACGAAGACATTATAAATCAATTGAATTCAGTAAGTTTTCTTCTTCTTTTTTTGTTTCTGTTAAGCAAAAATCCTGCAAGATGTGATAACAAACGAAAAAGGATAAGTGTATTGTAAAGGGACTTTCATTATTCATTACACAAGACTTGCAAACAATACAACTCGCTAGCTGAAGCACGAAAACATTGCGACAAATGAGTGGCACGGGATTCAGATTGGATTCGTTTATGTGATCGATGGGAGAGAGAAGACTTCAAAAAAATTTATGGAAGCAAATACTAAGGCTCGAGCTACTCTTCCATTCACTCACAGGGGTTACACTACGACATTTTTATTCCATAAGAAGACAAAGGTATGTATGTCATTTTTATATTATAATAGATATTGTGCATCCTATAACTTTGATCATAACATGCAGGAATCAGAAGATGGTAAGAAGTTGAATGATATGGAGTTTTTTCAACTCACTCATTCTAGTGCTAAGAAAGGATGGGTGGTCGAGGCAGAAGAGAAATATGTAACCAAAATTTGGTGTTTATTTGTAATTTCCTTCCTTTTTTTTTTACAATATATCAATACATTATGTCATTATTATATGGGATGAAATAATGGCACTAAAAACTGATTCACAAGAAACGGGAGAATCTATTGAAGATAGAGAGATTGTGACCGAATGTTGGGTAAGCGGTCGGGTCATGCGAAGGGTCTTGGTTGGGGACAAAAACCAAAACATGCTAGGAATGGAGCAAGGTACAATCACACTAAAGAAACATAGGTTCAAGTTGCACACTTGCAAAGTATAGTTGAATCACAACAAATCATCATTGAAGAGATCCTACGAAGGCTAGCAACTCAAGAAGCTACCTCTAACATAGAAAGAAGTTCAGAACAATAGTTAACAGGTAATGTTTATTGGAAGTTCTTCTTACAACTCTAGTTTGTTGAAGTTAGTGGACTTGATTAGTTTGTGTTGAAGTGCTATGATTATCCCACGACTATGGTAATCTATTTTTTAAATTTTATTTTATATGTGCTTCAATGATCATTTGTTCCTAAGTGTGTTTTGATTAGGATGTGGCTAACTTATTAGCTCTATCTCTTGTTTAA

mRNA sequence

ATGCGAGAAGCTCTGAATATATTAACTGACGAAGACATTATAAATCAATTGAATTCACTGAAGCACGAAAACATTGCGACAAATGAGTGGCACGGGATTCAGATTGGATTCGTTTATGTGATCGATGGGAGAGAGAAGACTTCAAAAAAATTTATGGAAGCAAATACTAAGGCTCGAGCTACTCTTCCATTCACTCACAGGGGTTACACTACGACATTTTTATTCCATAAGAAGACAAAGGAATCAGAAGATGGTAAGAAGTTGAATGATATGGAGTTTTTTCAACTCACTCATTCTAGTGCTAAGAAAGGATGGGTGGTCGAGGCAGAAGAGAAATATGATGTGGCTAACTTATTAGCTCTATCTCTTGTTTAA

Coding sequence (CDS)

ATGCGAGAAGCTCTGAATATATTAACTGACGAAGACATTATAAATCAATTGAATTCACTGAAGCACGAAAACATTGCGACAAATGAGTGGCACGGGATTCAGATTGGATTCGTTTATGTGATCGATGGGAGAGAGAAGACTTCAAAAAAATTTATGGAAGCAAATACTAAGGCTCGAGCTACTCTTCCATTCACTCACAGGGGTTACACTACGACATTTTTATTCCATAAGAAGACAAAGGAATCAGAAGATGGTAAGAAGTTGAATGATATGGAGTTTTTTCAACTCACTCATTCTAGTGCTAAGAAAGGATGGGTGGTCGAGGCAGAAGAGAAATATGATGTGGCTAACTTATTAGCTCTATCTCTTGTTTAA

Protein sequence

MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLALSLV*
Homology
[Close]
BLAST of Csa6G383550 vs. TrEMBL
Match: A0A0A0KDT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383550 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.0e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARA 60
           MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARA
Sbjct: 1   MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARA 60

Query: 61  TLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLA 120
           TLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLA
Sbjct: 61  TLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLA 120

Query: 121 LSLV 125
           LSLV
Sbjct: 121 LSLV 124

[Close]
BLAST of Csa6G383550 vs. NCBI nr
Match: gi|700192514|gb|KGN47718.1| (hypothetical protein Csa_6G383550 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARA 60
           MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARA
Sbjct: 1   MREALNILTDEDIINQLNSLKHENIATNEWHGIQIGFVYVIDGREKTSKKFMEANTKARA 60

Query: 61  TLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLA 120
           TLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLA
Sbjct: 61  TLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLA 120

Query: 121 LSLV 125
           LSLV
Sbjct: 121 LSLV 124

The following BLAST results are available for this feature:
BLAST of Csa6G383550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDT8_CUCSA4.0e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383550 PE=4 SV=1[more]
BLAST of Csa6G383550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192514|gb|KGN47718.1|5.8e-64100.00hypothetical protein Csa_6G383550 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004252Probable_transposase_24
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G383550.1Csa6G383550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 46..110
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G383550CsGy6G019780Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G383550Silver-seed gourdcarcuB0478
Csa6G383550Silver-seed gourdcarcuB0851
Csa6G383550Watermelon (97103) v2cuwmbB497
Csa6G383550Wax gourdcuwgoB572
Csa6G383550Cucumber (Gy14) v1cgycuB289
Csa6G383550Cucurbita maxima (Rimu)cmacuB310
Csa6G383550Cucurbita maxima (Rimu)cmacuB769
Csa6G383550Cucurbita moschata (Rifu)cmocuB298
Csa6G383550Cucurbita moschata (Rifu)cmocuB761
Csa6G383550Melon (DHL92) v3.5.1cumeB477
Csa6G383550Watermelon (Charleston Gray)cuwcgB506
Csa6G383550Watermelon (97103) v1cuwmB467
Csa6G383550Cucurbita pepo (Zucchini)cpecuB199
Csa6G383550Cucurbita pepo (Zucchini)cpecuB461
Csa6G383550Bottle gourd (USVL1VR-Ls)culsiB480
Csa6G383550Melon (DHL92) v3.6.1cumedB449