Csa6G383540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G383540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 17391474 .. 17392298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGGTGTTAGTACCTCCACATGAGTCTACTGGACTTTATACTGAAGCACCTGAGACAAGTGAGCGAGCTCCTCAACATTCTATTGAAGTTCAAGTGACATGTGAGTTTAGTCAACATTTCGAGTGCCTGAAGCTAAAGTTAGATCACATGGAGTTATCCTTAGCGGCTGAGTTGATGGCCATAAATGAGATGCTGACTTTGTTACTTAAGGTATGTTGTTTTCAGTTTACTTTGTTTATTGTTAATTAAATTATTATAACCATTCGTATTAATTTTCATATCACTTGTAGAAGAAGTTGGTGGGATGTAACAGTTCTATGATCGTGGTCAACACACATCATTTGTCGCACCGCCCCCTGACCCACCAGTTGATTACCCAATTGGTGACCTAGTGGGTTATTACATAGATGTCCTAGCTCCAAAGGCTGATGACCAAGCACTTGATGATGTTGCAGGAACATCGATTAGTGAAGATCTTTTTGAAGGTATTGTCTCCATTAATATATCTTTAAGTGGTGAGGATAATATACAACTATTCGTTCATACTATACTAGAGTTGAAAGATGAGGTAGATATTATTATCATCATACTTACTAAGGGTTACTATAGATTGATATTATTAATTTTATTTATTTGATGTTGGCAACCTACAGAGCTCAATAGCGAGGTAATACCACTATTATAGGAACCAGATGTGGTACCTAAGGAAAGGACCACGAGGAAGAGAGGGGTACCATAAAAGCTGCACAACCCAATTATCGAACATGCAACAAGGAAGAAAAGAAGAAAAGGAGTAAAGCCATAGAATCTAGTGGCTAG

mRNA sequence

ATGACTGAGGTGTTAGTACCTCCACATGAGTCTACTGGACTTTATACTGAAGCACCTGAGACAAGTGAGCGAGCTCCTCAACATTCTATTGAAGTTCAAGTGACATGTGAGTTTAGTCAACATTTCGAGTGCCTGAAGCTAAAGTTAGATCACATGGAGTTATCCTTAGCGGCTGAGTTGATGGCCATAAATGAGATGCTGACTTTGTTACTTAAGTTCTATGATCGTGGTCAACACACATCATTTGTCGCACCGCCCCCTGACCCACCAGTTGATTACCCAATTGGTGACCTAGTGGGTTATTACATAGATGTCCTAGCTCCAAAGGCTGATGACCAAGCACTTGATGATGTTGCAGGAACATCGATTAGTGAAGATCTTTTTGAAGGTATTGTCTCCATTAATATATCTTTAAGTGGTGAGGATAATATACAACTATTCGTTCATACTATACTAGAGTTGAAAGATGAGGACCACGAGGAAGAGAGGGGTACCATAAAAGCTGCACAACCCAATTATCGAACATGCAACAAGGAAGAAAAGAAGAAAAGGAGTAAAGCCATAGAATCTAGTGGCTAG

Coding sequence (CDS)

ATGACTGAGGTGTTAGTACCTCCACATGAGTCTACTGGACTTTATACTGAAGCACCTGAGACAAGTGAGCGAGCTCCTCAACATTCTATTGAAGTTCAAGTGACATGTGAGTTTAGTCAACATTTCGAGTGCCTGAAGCTAAAGTTAGATCACATGGAGTTATCCTTAGCGGCTGAGTTGATGGCCATAAATGAGATGCTGACTTTGTTACTTAAGTTCTATGATCGTGGTCAACACACATCATTTGTCGCACCGCCCCCTGACCCACCAGTTGATTACCCAATTGGTGACCTAGTGGGTTATTACATAGATGTCCTAGCTCCAAAGGCTGATGACCAAGCACTTGATGATGTTGCAGGAACATCGATTAGTGAAGATCTTTTTGAAGGTATTGTCTCCATTAATATATCTTTAAGTGGTGAGGATAATATACAACTATTCGTTCATACTATACTAGAGTTGAAAGATGAGGACCACGAGGAAGAGAGGGGTACCATAAAAGCTGCACAACCCAATTATCGAACATGCAACAAGGAAGAAAAGAAGAAAAGGAGTAAAGCCATAGAATCTAGTGGCTAG

Protein sequence

MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAELMAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAGTSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEEKKKRSKAIESSG*

Homology

[Close]

BLAST of Csa6G383540 vs. TrEMBL
Match: A0A0A0KH42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383540 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.2e-104
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


Query: 1   MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAEL 60
           MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAEL
Sbjct: 1   MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAEL 60

Query: 61  MAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAG 120
           MAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAG
Sbjct: 61  MAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAG 120

Query: 121 TSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEE 180
           TSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEE
Sbjct: 121 TSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEE 180

Query: 181 KKKRSKAIESSG 193
           KKKRSKAIESSG
Sbjct: 181 KKKRSKAIESSG 192

[Close]

BLAST of Csa6G383540 vs. TrEMBL
Match: A0A0A0M3N2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699600 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 52  MELSLAAELMAINEMLTLLLK--------FYDRGQHTSFVAPPPDPPVDYPIGDLVGYYI 111
           ME S   EL  I EML +LLK        FY  G+   FVAP   PPV     DLVG+Y+
Sbjct: 1   MESSFMVELTTIKEMLIVLLKRKLVERQKFYGGGKGPPFVAPLVGPPVH----DLVGHYV 60

Query: 112 DVLAPKADDQALDDVAGTSISEDLFEGIVSINISLSGEDNI 145
           DVL  + D+QALDDV GT  ++D +  IV I+IS  GED++
Sbjct: 61  DVLDLEIDNQALDDVVGTLTNKDPYADIVLIDISSVGEDDL 97

[Close]

BLAST of Csa6G383540 vs. NCBI nr
Match: gi|700192513|gb|KGN47717.1| (hypothetical protein Csa_6G383540 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 1.8e-104
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


Query: 1   MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAEL 60
           MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAEL
Sbjct: 1   MTEVLVPPHESTGLYTEAPETSERAPQHSIEVQVTCEFSQHFECLKLKLDHMELSLAAEL 60

Query: 61  MAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAG 120
           MAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAG
Sbjct: 61  MAINEMLTLLLKFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYIDVLAPKADDQALDDVAG 120

Query: 121 TSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEE 180
           TSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEE
Sbjct: 121 TSISEDLFEGIVSINISLSGEDNIQLFVHTILELKDEDHEEERGTIKAAQPNYRTCNKEE 180

Query: 181 KKKRSKAIESSG 193
           KKKRSKAIESSG
Sbjct: 181 KKKRSKAIESSG 192

[Close]

BLAST of Csa6G383540 vs. NCBI nr
Match: gi|700211735|gb|KGN66831.1| (hypothetical protein Csa_1G699600 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 52  MELSLAAELMAINEMLTLLLK--------FYDRGQHTSFVAPPPDPPVDYPIGDLVGYYI 111
           ME S   EL  I EML +LLK        FY  G+   FVAP   PPV     DLVG+Y+
Sbjct: 1   MESSFMVELTTIKEMLIVLLKRKLVERQKFYGGGKGPPFVAPLVGPPVH----DLVGHYV 60

Query: 112 DVLAPKADDQALDDVAGTSISEDLFEGIVSINISLSGEDNI 145
           DVL  + D+QALDDV GT  ++D +  IV I+IS  GED++
Sbjct: 61  DVLDLEIDNQALDDVVGTLTNKDPYADIVLIDISSVGEDDL 97

The following BLAST results are available for this feature:

BLAST of Csa6G383540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH42_CUCSA	1.2e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383540 PE=4 SV=1	[more]
A0A0A0M3N2_CUCSA	3.6e-11	47.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699600 PE=4 SV=1	[more]

BLAST of Csa6G383540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192513\|gb\|KGN47717.1\|	1.8e-104	100.00	hypothetical protein Csa_6G383540 [Cucumis sativus]	[more]
gi\|700211735\|gb\|KGN66831.1\|	5.2e-11	47.52	hypothetical protein Csa_1G699600 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G383540.1	Csa6G383540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G383540	CSPI06G20310	Wild cucumber (PI 183967)	cpicuB313
Csa6G383540	CsGy6G019770	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G383540	Cucumber (Gy14) v1	cgycuB289
Csa6G383540	Cucurbita maxima (Rimu)	cmacuB310
Csa6G383540	Cucurbita maxima (Rimu)	cmacuB769
Csa6G383540	Cucurbita moschata (Rifu)	cmocuB298
Csa6G383540	Cucurbita moschata (Rifu)	cmocuB761
Csa6G383540	Melon (DHL92) v3.5.1	cumeB477
Csa6G383540	Watermelon (Charleston Gray)	cuwcgB506
Csa6G383540	Watermelon (97103) v1	cuwmB467
Csa6G383540	Cucurbita pepo (Zucchini)	cpecuB199
Csa6G383540	Cucurbita pepo (Zucchini)	cpecuB461
Csa6G383540	Bottle gourd (USVL1VR-Ls)	culsiB480
Csa6G383540	Melon (DHL92) v3.6.1	cumedB449
Csa6G383540	Silver-seed gourd	carcuB0478
Csa6G383540	Silver-seed gourd	carcuB0851
Csa6G383540	Watermelon (97103) v2	cuwmbB497
Csa6G383540	Wax gourd	cuwgoB572