Csa6G383020 (gene) Cucumber (Chinese Long) v2

NameCsa6G383020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17342928 .. 17343164 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

mRNA sequence

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

Coding sequence (CDS)

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

Protein sequence

MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDMSSVLKGH*
BLAST of Csa6G383020 vs. TrEMBL
Match: A0A0A0KFT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383020 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.5e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60
          MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH
Sbjct: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60

Query: 61 VMTFVGDEEDMSSVLKGH 79
          VMTFVGDEEDMSSVLKGH
Sbjct: 61 VMTFVGDEEDMSSVLKGH 78

BLAST of Csa6G383020 vs. NCBI nr
Match: gi|700192510|gb|KGN47714.1| (hypothetical protein Csa_6G383020 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.0e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60
          MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH
Sbjct: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60

Query: 61 VMTFVGDEEDMSSVLKGH 79
          VMTFVGDEEDMSSVLKGH
Sbjct: 61 VMTFVGDEEDMSSVLKGH 78

BLAST of Csa6G383020 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-07
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1

Query: 25  YPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           YPCSF DE RK F+SL QGD T+ +YEK FT+LAK+ + FV DE D
Sbjct: 76  YPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTELAKYTLDFVIDEVD 121

BLAST of Csa6G383020 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-06
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 19  KNFRE-VYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           K F+E  YP  FVD  RK FL+L+QG+ T+A+YE KF +L K+V++F+ DEED
Sbjct: 131 KGFQEKFYPHLFVDTKRKEFLNLKQGNMTIAEYENKFIELVKYVISFIMDEED 183

BLAST of Csa6G383020 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-06
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1

Query: 13  FVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           F ++ +K F   YP  FVDE R+ FL L QGD T+A+Y KKF +LA++ +TF+ +EED
Sbjct: 61  FQREFQKKF---YPHLFVDEKRREFLRLVQGDETVAQYGKKFMELARYAITFIMNEED 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KFT5_CUCSA3.5e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G383020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700192510|gb|KGN47714.1|5.0e-37100.00hypothetical protein Csa_6G383020 [Cucumis sativus][more]
gi|659111571|ref|XP_008455797.1|5.4e-0763.04PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659098594|ref|XP_008450217.1|3.5e-0654.72PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|6.0e-0650.00PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU138142cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G383020.1Csa6G383020.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU138142CU138142transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None