Csa6G382980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G382980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 17294281 .. 17294760 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGCATCTCTCACGACTGTTGTGCATCTATTTTGCCCGCTACGATACTCATCATTTCTTTTTCAAAGCAACGACAATTTCTCATCTCAAACAACGATGGCGAGTTCTTATTGGTATTCAATGACGATGTCGTCTGTCCTCTCACGATGATTTTTTCATCTATGTTCGTTGCCTCTCTACTCGTCGTTGCTTTGTTCGTCATATTGACCCAGGAAAGGTAGATAGGCAACATCAAGCTATAACTTTCAAACAACACTCTCTATCCTTCTTGCTCTGTTCGTTATATTGACCCTAGGAAGATATAGGTAGTTTTTGTTCTTTTTCTTTGAAGTATCTTTGTTCGTTGTTCACCTTTCCCTCAAGATACTTGTACGCTATCGGTCATTGAGGAATCTGTCAACTCACCGTCATCTACATGGGTTTCGCTTAGGGTTATTCGTCTACCAGCTCGCTCTCTATTGCTAGTAGACACTTAA

mRNA sequence

ATGACGAGCATCTCTCACGACTGTTGTGCATCTATTTTGCCCGCTACGATACTCATCATTTCTTTTTCAAAGCAACGACAATTTCTCATCTCAAACAACGATGGCGAGTTCTTATTGGTATTCAATGACGATGTCGTCTGTCCTCTCACGATGATTTTTTCATCTATGTTCGTTGCCTCTCTACTCGTCGTTGCTTTGTTCGTCATATTGACCCAGGAAAGTATCTTTGTTCGTTGTTCACCTTTCCCTCAAGATACTTGTACGCTATCGGTCATTGAGGAATCTGTCAACTCACCGTCATCTACATGGGTTTCGCTTAGGGTTATTCGTCTACCAGCTCGCTCTCTATTGCTAGTAGACACTTAA

Coding sequence (CDS)

ATGACGAGCATCTCTCACGACTGTTGTGCATCTATTTTGCCCGCTACGATACTCATCATTTCTTTTTCAAAGCAACGACAATTTCTCATCTCAAACAACGATGGCGAGTTCTTATTGGTATTCAATGACGATGTCGTCTGTCCTCTCACGATGATTTTTTCATCTATGTTCGTTGCCTCTCTACTCGTCGTTGCTTTGTTCGTCATATTGACCCAGGAAAGTATCTTTGTTCGTTGTTCACCTTTCCCTCAAGATACTTGTACGCTATCGGTCATTGAGGAATCTGTCAACTCACCGTCATCTACATGGGTTTCGCTTAGGGTTATTCGTCTACCAGCTCGCTCTCTATTGCTAGTAGACACTTAA

Protein sequence

MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVASLLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVDT*
Homology
[Close]
BLAST of Csa6G382980 vs. TrEMBL
Match: A0A0A0KDC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382980 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVAS 60
           MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVAS
Sbjct: 1   MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVAS 60

Query: 61  LLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVD 120
           LLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVD
Sbjct: 61  LLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVD 120

Query: 121 T 122
           T
Sbjct: 121 T 121

[Close]
BLAST of Csa6G382980 vs. NCBI nr
Match: gi|700192506|gb|KGN47710.1| (hypothetical protein Csa_6G382980 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVAS 60
           MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVAS
Sbjct: 1   MTSISHDCCASILPATILIISFSKQRQFLISNNDGEFLLVFNDDVVCPLTMIFSSMFVAS 60

Query: 61  LLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVD 120
           LLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVD
Sbjct: 61  LLVVALFVILTQESIFVRCSPFPQDTCTLSVIEESVNSPSSTWVSLRVIRLPARSLLLVD 120

Query: 121 T 122
           T
Sbjct: 121 T 121

The following BLAST results are available for this feature:
BLAST of Csa6G382980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDC5_CUCSA1.3e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382980 PE=4 SV=1[more]
BLAST of Csa6G382980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192506|gb|KGN47710.1|1.9e-59100.00hypothetical protein Csa_6G382980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU093601cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G382980.1Csa6G382980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU093601CU093601transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G382980CSPI06G20240Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G382980Silver-seed gourdcarcuB0478
Csa6G382980Silver-seed gourdcarcuB0851
Csa6G382980Watermelon (97103) v2cuwmbB497
Csa6G382980Wax gourdcuwgoB572
Csa6G382980Cucumber (Gy14) v1cgycuB045
Csa6G382980Cucurbita maxima (Rimu)cmacuB310
Csa6G382980Cucurbita maxima (Rimu)cmacuB769
Csa6G382980Cucurbita moschata (Rifu)cmocuB298
Csa6G382980Cucurbita moschata (Rifu)cmocuB761
Csa6G382980Melon (DHL92) v3.5.1cumeB477
Csa6G382980Watermelon (Charleston Gray)cuwcgB506
Csa6G382980Watermelon (97103) v1cuwmB467
Csa6G382980Cucurbita pepo (Zucchini)cpecuB199
Csa6G382980Cucurbita pepo (Zucchini)cpecuB461
Csa6G382980Bottle gourd (USVL1VR-Ls)culsiB480
Csa6G382980Cucumber (Gy14) v2cgybcuB281
Csa6G382980Melon (DHL92) v3.6.1cumedB449