Csa6G381840 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G381840
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 17120487 .. 17120756 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCTGAACACAGCCGCCTCCAAAATCCTTCAAAAAGGCCGCCAAAAATCTCCGTTTGCTTTCATTCAGAAGTTCGGCTATGTCGATGTTTACATGAAGTGGAAGAAAGATTCATACTACGATTCCATTGAGCATATCACCAAATCCATTGAACTCAAATCCATTATCTCTCTCAAAAATTGCATCGCTCAAGACCCAAATGGGTGTATCCCAATTTCCGCCGTTTCAAAGCGAGGCCTCGAAATGGGCGTCTCGATGAAAGTTTAG

mRNA sequence

ATGTTCCTGAACACAGCCGCCTCCAAAATCCTTCAAAAAGGCCGCCAAAAATCTCCGTTTGCTTTCATTCAGAAGTTCGGCTATGTCGATGTTTACATGAAGTGGAAGAAAGATTCATACTACGATTCCATTGAGCATATCACCAAATCCATTGAACTCAAATCCATTATCTCTCTCAAAAATTGCATCGCTCAAGACCCAAATGGGTGTATCCCAATTTCCGCCGTTTCAAAGCGAGGCCTCGAAATGGGCGTCTCGATGAAAGTTTAG

Coding sequence (CDS)

ATGTTCCTGAACACAGCCGCCTCCAAAATCCTTCAAAAAGGCCGCCAAAAATCTCCGTTTGCTTTCATTCAGAAGTTCGGCTATGTCGATGTTTACATGAAGTGGAAGAAAGATTCATACTACGATTCCATTGAGCATATCACCAAATCCATTGAACTCAAATCCATTATCTCTCTCAAAAATTGCATCGCTCAAGACCCAAATGGGTGTATCCCAATTTCCGCCGTTTCAAAGCGAGGCCTCGAAATGGGCGTCTCGATGAAAGTTTAG

Protein sequence

MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLKNCIAQDPNGCIPISAVSKRGLEMGVSMKV*

Homology

[Close]

BLAST of Csa6G381840 vs. TrEMBL
Match: A0A0A0KTJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622690 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60
          MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK
Sbjct: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60

Query: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 90
          NCIAQDPNGCIPISAVSKRGLEMGVSMKV
Sbjct: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 89

[Close]

BLAST of Csa6G381840 vs. TrEMBL
Match: A0A0A0KFR4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G381840 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60
          MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK
Sbjct: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60

Query: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 90
          NCIAQDPNGCIPISAVSKRGLEMGVSMKV
Sbjct: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 89

[Close]

BLAST of Csa6G381840 vs. TrEMBL
Match: A0A072TWK7_MEDTR (Plant organelle RNA recognition domain protein OS=Medicago truncatula GN=MTR_7g018630 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-24
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 19  PFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLKNCIAQDPNGCIPISAVSK 78
           PF+ IQ+F YV+VYMKWKKDSYYDSIEHI  SI+LK +I+LKNCIAQDPNGCIPIS+VSK
Sbjct: 35  PFSHIQRFNYVNVYMKWKKDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNGCIPISSVSK 94

Query: 79  RGLEMGVSMKV 90
           RGL++ V MKV
Sbjct: 95  RGLQLDVPMKV 105

[Close]

BLAST of Csa6G381840 vs. TrEMBL
Match: A0A151SB93_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026134 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 19 PFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLKNCIAQDPNGCIPISAVSK 78
          PF +I+++ YV+VYMKWKKDSYYDSIE I +SI+LK II+LKNCI QDPNGCIPISAVSK
Sbjct: 25 PFVYIRRYSYVNVYMKWKKDSYYDSIELIHESIQLKPIIALKNCIVQDPNGCIPISAVSK 84

Query: 79 RGLEMGVSMKV 90
          RGLE+ V MKV
Sbjct: 85 RGLELDVPMKV 95

[Close]

BLAST of Csa6G381840 vs. TrEMBL
Match: A0A0R0I9X5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G029500 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-23
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 1  MFLNTAASKILQ-KGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISL 60
          MF N   S +   K   K  F  IQ++ YV+VYMKWKKDSYYDSIEHI  S++LK II+L
Sbjct: 1  MFFNFKESAVKTIKLSFKYHFLHIQRYSYVNVYMKWKKDSYYDSIEHIHYSVQLKPIIAL 60

Query: 61 KNCIAQDPNGCIPISAVSKRGLEMGVSMKV 90
          KNCI +DPNGCIPISAVSKRGLE+ V MKV
Sbjct: 61 KNCIVRDPNGCIPISAVSKRGLELDVPMKV 90

[Close]

BLAST of Csa6G381840 vs. TAIR10
Match: AT2G39120.1 (AT2G39120.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-20
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 24 QKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLKNCIAQDPNGCIPISAVSKRGLEM 83
          QK  YVDVYMKWK+D Y+D+IEHI +S +LKS++SLKNCI Q+PN CIPISA+SK+  + 
Sbjct: 20 QKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQF 79

Query: 84 GVSMKV 90
           VS K+
Sbjct: 80 DVSTKI 85

[Close]

BLAST of Csa6G381840 vs. NCBI nr
Match: gi|449449483|ref|XP_004142494.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60
          MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK
Sbjct: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60

Query: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 90
          NCIAQDPNGCIPISAVSKRGLEMGVSMKV
Sbjct: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 89

[Close]

BLAST of Csa6G381840 vs. NCBI nr
Match: gi|700192490|gb|KGN47694.1| (hypothetical protein Csa_6G381840 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60
          MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK
Sbjct: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60

Query: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 90
          NCIAQDPNGCIPISAVSKRGLEMGVSMKV
Sbjct: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 89

[Close]

BLAST of Csa6G381840 vs. NCBI nr
Match: gi|659092014|ref|XP_008446854.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-38
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 1


Query: 1  MFLNTAASKILQKGRQKSPFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60
          MFLNTAASKILQK RQKSPF FIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK
Sbjct: 1  MFLNTAASKILQKCRQKSPF-FIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLK 60

Query: 61 NCIAQDPNGCIPISAVSKRGLEMGVSMKV 90
          NCIAQDPNGCIPISAVSKRGL+M +SMKV
Sbjct: 61 NCIAQDPNGCIPISAVSKRGLQMDISMKV 88

[Close]

BLAST of Csa6G381840 vs. NCBI nr
Match: gi|922341596|ref|XP_013447737.1| (plant organelle RNA recognition domain protein [Medicago truncatula])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 19  PFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLKNCIAQDPNGCIPISAVSK 78
           PF+ IQ+F YV+VYMKWKKDSYYDSIEHI  SI+LK +I+LKNCIAQDPNGCIPIS+VSK
Sbjct: 35  PFSHIQRFNYVNVYMKWKKDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNGCIPISSVSK 94

Query: 79  RGLEMGVSMKV 90
           RGL++ V MKV
Sbjct: 95  RGLQLDVPMKV 105

[Close]

BLAST of Csa6G381840 vs. NCBI nr
Match: gi|1012340842|gb|KYP52053.1| (hypothetical protein KK1_026134 [Cajanus cajan])

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 19 PFAFIQKFGYVDVYMKWKKDSYYDSIEHITKSIELKSIISLKNCIAQDPNGCIPISAVSK 78
          PF +I+++ YV+VYMKWKKDSYYDSIE I +SI+LK II+LKNCI QDPNGCIPISAVSK
Sbjct: 25 PFVYIRRYSYVNVYMKWKKDSYYDSIELIHESIQLKPIIALKNCIVQDPNGCIPISAVSK 84

Query: 79 RGLEMGVSMKV 90
          RGLE+ V MKV
Sbjct: 85 RGLELDVPMKV 95

The following BLAST results are available for this feature:

BLAST of Csa6G381840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTJ8_CUCSA	8.2e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622690 PE=4 SV=1	[more]
A0A0A0KFR4_CUCSA	8.2e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G381840 PE=4 SV=1	[more]
A0A072TWK7_MEDTR	1.0e-24	77.46	Plant organelle RNA recognition domain protein OS=Medicago truncatula GN=MTR_7g0...	[more]
A0A151SB93_CAJCA	1.5e-23	76.06	Uncharacterized protein OS=Cajanus cajan GN=KK1_026134 PE=4 SV=1	[more]
A0A0R0I9X5_SOYBN	3.3e-23	65.56	Uncharacterized protein OS=Glycine max GN=GLYMA_09G029500 PE=4 SV=1	[more]

BLAST of Csa6G381840 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39120.1	1.8e-20	63.64	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of Csa6G381840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449483\|ref\|XP_004142494.1\|	1.2e-42	100.00	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus]	[more]
gi\|700192490\|gb\|KGN47694.1\|	1.2e-42	100.00	hypothetical protein Csa_6G381840 [Cucumis sativus]	[more]
gi\|659092014\|ref\|XP_008446854.1\|	1.8e-38	94.38	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]	[more]
gi\|922341596\|ref\|XP_013447737.1\|	1.5e-24	77.46	plant organelle RNA recognition domain protein [Medicago truncatula]	[more]
gi\|1012340842\|gb\|KYP52053.1\|	2.1e-23	76.06	hypothetical protein KK1_026134 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0000373	Group II intron splicing
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G381840.1	Csa6G381840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 36..88 score: 7.
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 22..89 score: 8.1
None	No IPR available	PANTHER	PTHR31476:SF13	GROUP II INTRON SPLICING PROTEIN WTF9	coord: 22..89 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G381840	Melon (DHL92) v3.6.1	cumedB449
Csa6G381840	Silver-seed gourd	carcuB0068
Csa6G381840	Silver-seed gourd	carcuB0851
Csa6G381840	Watermelon (97103) v2	cuwmbB497
Csa6G381840	Wax gourd	cuwgoB572
Csa6G381840	Cucumber (Gy14) v1	cgycuB466
Csa6G381840	Cucurbita maxima (Rimu)	cmacuB310
Csa6G381840	Cucurbita maxima (Rimu)	cmacuB769
Csa6G381840	Cucurbita moschata (Rifu)	cmocuB298
Csa6G381840	Cucurbita moschata (Rifu)	cmocuB761
Csa6G381840	Melon (DHL92) v3.5.1	cumeB477
Csa6G381840	Watermelon (Charleston Gray)	cuwcgB506
Csa6G381840	Watermelon (97103) v1	cuwmB467
Csa6G381840	Cucurbita pepo (Zucchini)	cpecuB199
Csa6G381840	Cucurbita pepo (Zucchini)	cpecuB461
Csa6G381840	Bottle gourd (USVL1VR-Ls)	culsiB480
Csa6G381840	Cucumber (Gy14) v2	cgybcuB281