Csa6G367160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G367160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 16855060 .. 16855539 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATGTTCATCAATAAAATGAAGACCCAAAACCAGCAAATTCTGCCCATTCTGAAGTGCAGCATATCAGTTTTTAATGATCTTTCTTACTGTATGTAAAGTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG

mRNA sequence

ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG

Coding sequence (CDS)

ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG

Protein sequence

MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSPKKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCPESHKQAL*

Homology

[Close]

BLAST of Csa6G367160 vs. TrEMBL
Match: A0A0A0KD93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367160 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
           MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP
Sbjct: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60

Query: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120
           KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP
Sbjct: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120

Query: 121 ESHKQAL 128
           ESHKQAL
Sbjct: 121 ESHKQAL 127

[Close]

BLAST of Csa6G367160 vs. NCBI nr
Match: gi|700192466|gb|KGN47670.1| (hypothetical protein Csa_6G367160 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 3.7e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
           MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP
Sbjct: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60

Query: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120
           KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP
Sbjct: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120

Query: 121 ESHKQAL 128
           ESHKQAL
Sbjct: 121 ESHKQAL 127

The following BLAST results are available for this feature:

BLAST of Csa6G367160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD93_CUCSA	2.6e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367160 PE=4 SV=1	[more]

BLAST of Csa6G367160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192466\|gb\|KGN47670.1\|	3.7e-66	100.00	hypothetical protein Csa_6G367160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G367160.1	Csa6G367160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G367160	CSPI06G19850	Wild cucumber (PI 183967)	cpicuB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G367160	Melon (DHL92) v3.5.1	cumeB466
Csa6G367160	Watermelon (Charleston Gray)	cuwcgB468
Csa6G367160	Watermelon (Charleston Gray)	cuwcgB496
Csa6G367160	Watermelon (97103) v1	cuwmB456
Csa6G367160	Watermelon (97103) v1	cuwmB510
Csa6G367160	Cucurbita pepo (Zucchini)	cpecuB119
Csa6G367160	Cucurbita pepo (Zucchini)	cpecuB837
Csa6G367160	Bottle gourd (USVL1VR-Ls)	culsiB470
Csa6G367160	Cucumber (Gy14) v2	cgybcuB042
Csa6G367160	Cucumber (Gy14) v2	cgybcuB281
Csa6G367160	Melon (DHL92) v3.6.1	cumedB447
Csa6G367160	Silver-seed gourd	carcuB0158
Csa6G367160	Silver-seed gourd	carcuB0673
Csa6G367160	Watermelon (97103) v2	cuwmbB487
Csa6G367160	Wax gourd	cuwgoB575
Csa6G367160	Wax gourd	cuwgoB640
Csa6G367160	Cucumber (Chinese Long) v2	cucuB037
Csa6G367160	Cucumber (Gy14) v1	cgycuB466
Csa6G367160	Cucurbita maxima (Rimu)	cmacuB191
Csa6G367160	Cucurbita maxima (Rimu)	cmacuB805
Csa6G367160	Cucurbita moschata (Rifu)	cmocuB175
Csa6G367160	Cucurbita moschata (Rifu)	cmocuB796