Csa6G367100 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G367100
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 16826074 .. 16826481 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAAAGAAAGTCCAGATGAAGAATACAGACAGAATGAAATGGAAAAAAGAAAACAAATATACATAGTGAGAAGCCCAGTTAAACAAGCCCACTTAGCGAAGGCAAAGAATGAAAGAAACACTAAGCTCAAAATTCAACCGAAGGAAGACAAGGAGGAAATGGCAGATCTCAAGCTGGTTGTGGATCTCGGTCCACTTTCGCCTTTATCAGACGAATTTCTCTCAAGTTCAGATCTCTTCACCCCCTCTTTATCACCCACATCGCCAACCCAACCATATATTGTGAAAGGCAACATTGCTCCGATGATGATAAGTGACCAAGAAGAAAAAGAAAAATCAGATAAGGAAGAAGAAGAAACAACCTTCAAGCAAAAATTGGAGGCATTTACAGAAACGGATCCCTAA

mRNA sequence

ATGCCCAAAGAAAGTCCAGATGAAGAATACAGACAGAATGAAATGGAAAAAAGAAAACAAATATACATAGTGAGAAGCCCAGTTAAACAAGCCCACTTAGCGAAGGCAAAGAATGAAAGAAACACTAAGCTCAAAATTCAACCGAAGGAAGACAAGGAGGAAATGGCAGATCTCAAGCTGGTTGTGGATCTCGGTCCACTTTCGCCTTTATCAGACGAATTTCTCTCAAGTTCAGATCTCTTCACCCCCTCTTTATCACCCACATCGCCAACCCAACCATATATTGTGAAAGGCAACATTGCTCCGATGATGATAAGTGACCAAGAAGAAAAAGAAAAATCAGATAAGGAAGAAGAAGAAACAACCTTCAAGCAAAAATTGGAGGCATTTACAGAAACGGATCCCTAA

Coding sequence (CDS)

ATGCCCAAAGAAAGTCCAGATGAAGAATACAGACAGAATGAAATGGAAAAAAGAAAACAAATATACATAGTGAGAAGCCCAGTTAAACAAGCCCACTTAGCGAAGGCAAAGAATGAAAGAAACACTAAGCTCAAAATTCAACCGAAGGAAGACAAGGAGGAAATGGCAGATCTCAAGCTGGTTGTGGATCTCGGTCCACTTTCGCCTTTATCAGACGAATTTCTCTCAAGTTCAGATCTCTTCACCCCCTCTTTATCACCCACATCGCCAACCCAACCATATATTGTGAAAGGCAACATTGCTCCGATGATGATAAGTGACCAAGAAGAAAAAGAAAAATCAGATAAGGAAGAAGAAGAAACAACCTTCAAGCAAAAATTGGAGGCATTTACAGAAACGGATCCCTAA

Protein sequence

MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKLVVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEETTFKQKLEAFTETDP*

Homology

[Close]

BLAST of Csa6G367100 vs. TrEMBL
Match: A0A0A0KDP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367100 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKL 60
           MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKL
Sbjct: 1   MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKL 60

Query: 61  VVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEE 120
           VVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEE
Sbjct: 61  VVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEE 120

Query: 121 TTFKQKLEAFTETDP 136
           TTFKQKLEAFTETDP
Sbjct: 121 TTFKQKLEAFTETDP 135

[Close]

BLAST of Csa6G367100 vs. NCBI nr
Match: gi|700192459|gb|KGN47663.1| (hypothetical protein Csa_6G367100 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKL 60
           MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKL
Sbjct: 1   MPKESPDEEYRQNEMEKRKQIYIVRSPVKQAHLAKAKNERNTKLKIQPKEDKEEMADLKL 60

Query: 61  VVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEE 120
           VVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEE
Sbjct: 61  VVDLGPLSPLSDEFLSSSDLFTPSLSPTSPTQPYIVKGNIAPMMISDQEEKEKSDKEEEE 120

Query: 121 TTFKQKLEAFTETDP 136
           TTFKQKLEAFTETDP
Sbjct: 121 TTFKQKLEAFTETDP 135

The following BLAST results are available for this feature:

BLAST of Csa6G367100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDP8_CUCSA	2.7e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367100 PE=4 SV=1	[more]

BLAST of Csa6G367100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192459\|gb\|KGN47663.1\|	3.8e-69	100.00	hypothetical protein Csa_6G367100 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G367100.1	Csa6G367100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G367100	Cucumber (Chinese Long) v2	cucuB037
Csa6G367100	Cucumber (Gy14) v1	cgycuB466
Csa6G367100	Cucurbita maxima (Rimu)	cmacuB191
Csa6G367100	Cucurbita maxima (Rimu)	cmacuB805
Csa6G367100	Cucurbita moschata (Rifu)	cmocuB175
Csa6G367100	Cucurbita moschata (Rifu)	cmocuB796
Csa6G367100	Melon (DHL92) v3.5.1	cumeB466
Csa6G367100	Watermelon (Charleston Gray)	cuwcgB468
Csa6G367100	Watermelon (Charleston Gray)	cuwcgB496
Csa6G367100	Watermelon (97103) v1	cuwmB456
Csa6G367100	Watermelon (97103) v1	cuwmB510
Csa6G367100	Cucurbita pepo (Zucchini)	cpecuB119
Csa6G367100	Cucurbita pepo (Zucchini)	cpecuB837
Csa6G367100	Bottle gourd (USVL1VR-Ls)	culsiB470
Csa6G367100	Cucumber (Gy14) v2	cgybcuB042
Csa6G367100	Cucumber (Gy14) v2	cgybcuB281
Csa6G367100	Melon (DHL92) v3.6.1	cumedB447
Csa6G367100	Silver-seed gourd	carcuB0158
Csa6G367100	Silver-seed gourd	carcuB0673
Csa6G367100	Watermelon (97103) v2	cuwmbB487
Csa6G367100	Wax gourd	cuwgoB575
Csa6G367100	Wax gourd	cuwgoB640