Csa6G365140 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G365140
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nuclear transcription factor Y subunit C-4; contains IPR009072 (Histone-fold)
Location	Chr6 : 16501105 .. 16501524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG

mRNA sequence

ATGGAGGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG

Coding sequence (CDS)

ATGGAGGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG

Protein sequence

MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES*

Homology

[Close]

BLAST of Csa6G365140 vs. Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           E E+  +    + P  R+KKIMK D+D+  +++EA  L + A ELF+  L  +S   A E
Sbjct: 54  EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 113

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLP 92
            KR+T++   I  A+ R   I DFL+D +P
Sbjct: 114 NKRRTLQKNDIAAAITR-TDIFDFLVDIVP 142

[Close]

BLAST of Csa6G365140 vs. Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           E E+  +    + P  R+KKIMK D+D+  +++EA  L + A ELF+  L  +S   A E
Sbjct: 67  EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 126

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLP 92
            KR+T++   I  A+ R   I DFL+D +P
Sbjct: 127 NKRRTLQKNDIAAAITR-TDIFDFLVDIVP 155

[Close]

BLAST of Csa6G365140 vs. Swiss-Prot
Match: DPB3_SCHPO (DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.6e-07
Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 1


Query: 11  RPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLE 70
           +  FP  R+KKIM+ D+D+GKV      ++S A ELF++ + ++S +     + K V + 
Sbjct: 21  KSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVS 80

Query: 71  HIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTR 109
           H++ AV+      DFL D   +   P   P K E +T+
Sbjct: 81  HLKHAVQSVEQF-DFLQDI--VEKVPDAPPIKAERKTK 115

[Close]

BLAST of Csa6G365140 vs. Swiss-Prot
Match: NC2A_BOVIN (Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.5e-07
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +    +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 MAVKRHRSISDFLLD 89
            ++  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Csa6G365140 vs. Swiss-Prot
Match: NC2A_HUMAN (Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 9.5e-07
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +    +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 MAVKRHRSISDFLLD 89
            ++  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Csa6G365140 vs. TrEMBL
Match: A0A0A0KGV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365140 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120
           EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRSTKTKSAETES 140
           RIDDFFRRSTKTKSAETES
Sbjct: 121 RIDDFFRRSTKTKSAETES 139

[Close]

BLAST of Csa6G365140 vs. TrEMBL
Match: F6HGA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03550 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 89/136 (65.44%), Postives = 106/136 (77.94%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           M EEE  EAI PE P GRVKK++KLD+DI KVNSEALFL+SC+TELFL+ LAE+SAE A 
Sbjct: 1   MAEEEKSEAIMPELPLGRVKKLVKLDRDINKVNSEALFLISCSTELFLRFLAEQSAEIAI 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120
           +KKR+TVKLEH+R+A K+HR   DFLLDSLP+PSQPSD P  D  R +   +K  P GTR
Sbjct: 61  QKKRRTVKLEHLRIAAKKHRPTRDFLLDSLPVPSQPSDRPPADRIRPQPAAEKPLPAGTR 120

Query: 121 RIDDFFRRSTKTKSAE 137
           RIDDFFR+  K K +E
Sbjct: 121 RIDDFFRKPEKEKPSE 136

[Close]

BLAST of Csa6G365140 vs. TrEMBL
Match: B9RMF4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1080560 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-41
Identity = 90/128 (70.31%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           EEE   E IRPEFPTGRVKKIMKLDKDI KV S+ALFLVS +TELFL+LLAEKSAE A E
Sbjct: 3   EEENTVETIRPEFPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATE 62

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRR 121
           +KRKT+KL+HIR+AVKRH+  SDFLLDSLP P++ SD  A ++NR+R + DK AP GTRR
Sbjct: 63  QKRKTIKLDHIRIAVKRHQPTSDFLLDSLPSPTESSDKLAAEKNRSRLIADKPAPPGTRR 122

Query: 122 IDDFFRRS 130
           ID+ F +S
Sbjct: 123 IDEIFAKS 130

[Close]

BLAST of Csa6G365140 vs. TrEMBL
Match: A0A0D2PU79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G168300 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 87/131 (66.41%), Postives = 107/131 (81.68%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           M E+E  + IRPEFPT RVKKIMKLDKDI KVNSEALFLVSC+T LFL+ LAE++A+ AA
Sbjct: 1   MAEDEAVDPIRPEFPTARVKKIMKLDKDINKVNSEALFLVSCSTNLFLRFLAERTAQVAA 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAK---DENRTRAVVDKVAPE 120
           EKK+KTVKL+H+R A+KRHR  SDFLLDSLP+P++ + + A+   D +R+R V DK AP 
Sbjct: 61  EKKKKTVKLDHLRTAIKRHRPTSDFLLDSLPIPAESTQSVARSATDRDRSRPVADKSAPA 120

Query: 121 GTRRIDDFFRR 129
           GTRRID FFR+
Sbjct: 121 GTRRIDLFFRK 131

[Close]

BLAST of Csa6G365140 vs. TrEMBL
Match: B9GMJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13970g PE=4 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-39
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 1


Query: 11  RPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLE 70
           RPEFPTGR+K+IMKLDKD  KVN++ALFLVS +TELFL+ LAEKSAE A EKKRK VKL+
Sbjct: 15  RPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSAEVAIEKKRKIVKLD 74

Query: 71  HIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRS 130
           HIR AVKRH   SDFLLDSLPLP+Q S+ PA D    R V DK AP GTRRID FF ++
Sbjct: 75  HIRAAVKRHHPTSDFLLDSLPLPAQSSEKPASDNTSARTVTDKPAPAGTRRIDQFFAKA 133

[Close]

BLAST of Csa6G365140 vs. TAIR10
Match: AT5G43250.1 (AT5G43250.1 nuclear factor Y, subunit C13)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-37
Identity = 88/139 (63.31%), Postives = 100/139 (71.94%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA   A
Sbjct: 1   MEEEE--GSIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTA 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDK---VAPE 120
           EKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP+QP          T++V DK     P 
Sbjct: 61  EKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQP-------VKHTKSVSDKKIPAPPI 120

Query: 121 GTRRIDDFFRR-STKTKSA 136
           GTRRIDDFF +   KT SA
Sbjct: 121 GTRRIDDFFSKGKAKTDSA 130

[Close]

BLAST of Csa6G365140 vs. TAIR10
Match: AT3G48590.1 (AT3G48590.1 nuclear factor Y, subunit C1)

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-09
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           E E+  +    + P  R+KKIMK D+D+  +++EA  L + A ELF+  L  +S   A E
Sbjct: 54  EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 113

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLP 92
            KR+T++   I  A+ R   I DFL+D +P
Sbjct: 114 NKRRTLQKNDIAAAITR-TDIFDFLVDIVP 142

[Close]

BLAST of Csa6G365140 vs. TAIR10
Match: AT5G63470.1 (AT5G63470.1 nuclear factor Y, subunit C4)

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-09
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           E E+  +    + P  R+KKIMK D+D+  +++EA  L + A ELF+  L  +S   A E
Sbjct: 67  EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 126

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLP 92
            KR+T++   I  A+ R   I DFL+D +P
Sbjct: 127 NKRRTLQKNDIAAAITR-TDIFDFLVDIVP 155

[Close]

BLAST of Csa6G365140 vs. TAIR10
Match: AT3G12480.1 (AT3G12480.1 nuclear factor Y, subunit C11)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIR 73
          FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E   E+  KTV   H++
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68

Query: 74 MAVKRHRSISDFL 87
            V+R+ ++ DFL
Sbjct: 69 HCVERY-NVFDFL 80

[Close]

BLAST of Csa6G365140 vs. TAIR10
Match: AT5G19490.1 (AT5G19490.1 Histone superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 10  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKL 69
           ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +    +  KTV  
Sbjct: 5   LQTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNA 64

Query: 70  EHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRT--RAVVD 113
            H++  V+   ++ DFL D++        +  +D++ T  R VVD
Sbjct: 65  FHLKQCVQA-TNVFDFLRDTVAKVPDLGGSDTEDQSATKRRKVVD 108

[Close]

BLAST of Csa6G365140 vs. NCBI nr
Match: gi|449452907|ref|XP_004144200.1| (PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 1.8e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120
           EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRSTKTKSAETES 140
           RIDDFFRRSTKTKSAETES
Sbjct: 121 RIDDFFRRSTKTKSAETES 139

[Close]

BLAST of Csa6G365140 vs. NCBI nr
Match: gi|659089430|ref|XP_008445504.1| (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-63
Identity = 130/137 (94.89%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120
           EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA AKDENR RAVVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRSTKTKSAET 138
           RIDDFFRR TKT SAET
Sbjct: 121 RIDDFFRRPTKTTSAET 137

[Close]

BLAST of Csa6G365140 vs. NCBI nr
Match: gi|1009152915|ref|XP_015894354.1| (PREDICTED: nuclear transcription factor Y subunit gamma-like [Ziziphus jujuba])

HSP 1 Score: 183.3 bits (464), Expect = 2.8e-43
Identity = 94/127 (74.02%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           EEEE G+ IRPEFP GRVKKIMKLD+DI KVNSEALFLVS + ELFL  LAE+SA+ A E
Sbjct: 3   EEEETGK-IRPEFPNGRVKKIMKLDRDINKVNSEALFLVSSSAELFLGFLAERSAKVAVE 62

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRR 121
           KKRKTVKLEH+R+AVKRHR  SDFLLDSLPLP QPSD PA + +R+R+V D  AP GTRR
Sbjct: 63  KKRKTVKLEHMRLAVKRHRPTSDFLLDSLPLPPQPSDQPATERSRSRSVADNSAPAGTRR 122

Query: 122 IDDFFRR 129
           IDDFF +
Sbjct: 123 IDDFFHK 128

[Close]

BLAST of Csa6G365140 vs. NCBI nr
Match: gi|225425432|ref|XP_002271716.1| (PREDICTED: chromatin accessibility complex protein 1 [Vitis vinifera])

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-42
Identity = 89/136 (65.44%), Postives = 106/136 (77.94%), Query Frame = 1


Query: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60
           M EEE  EAI PE P GRVKK++KLD+DI KVNSEALFL+SC+TELFL+ LAE+SAE A 
Sbjct: 1   MAEEEKSEAIMPELPLGRVKKLVKLDRDINKVNSEALFLISCSTELFLRFLAEQSAEIAI 60

Query: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120
           +KKR+TVKLEH+R+A K+HR   DFLLDSLP+PSQPSD P  D  R +   +K  P GTR
Sbjct: 61  QKKRRTVKLEHLRIAAKKHRPTRDFLLDSLPVPSQPSDRPPADRIRPQPAAEKPLPAGTR 120

Query: 121 RIDDFFRRSTKTKSAE 137
           RIDDFFR+  K K +E
Sbjct: 121 RIDDFFRKPEKEKPSE 136

[Close]

BLAST of Csa6G365140 vs. NCBI nr
Match: gi|255547732|ref|XP_002514923.1| (PREDICTED: negative cofactor 2 complex subunit alpha [Ricinus communis])

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-41
Identity = 90/128 (70.31%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 2   EEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAE 61
           EEE   E IRPEFPTGRVKKIMKLDKDI KV S+ALFLVS +TELFL+LLAEKSAE A E
Sbjct: 3   EEENTVETIRPEFPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATE 62

Query: 62  KKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRR 121
           +KRKT+KL+HIR+AVKRH+  SDFLLDSLP P++ SD  A ++NR+R + DK AP GTRR
Sbjct: 63  QKRKTIKLDHIRIAVKRHQPTSDFLLDSLPSPTESSDKLAAEKNRSRLIADKPAPPGTRR 122

Query: 122 IDDFFRRS 130
           ID+ F +S
Sbjct: 123 IDEIFAKS 130

The following BLAST results are available for this feature:

BLAST of Csa6G365140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYC1_ARATH	1.5e-07	37.78	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1...	[more]
NFYC4_ARATH	1.5e-07	37.78	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2...	[more]
DPB3_SCHPO	5.6e-07	32.65	DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
NC2A_BOVIN	9.5e-07	36.00	Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1	[more]
NC2A_HUMAN	9.5e-07	36.00	Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3	[more]

BLAST of Csa6G365140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGV1_CUCSA	1.2e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365140 PE=4 SV=1	[more]
F6HGA3_VITVI	1.3e-42	65.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03550 PE=4 SV=...	[more]
B9RMF4_RICCO	1.1e-41	70.31	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1080560 PE=4 SV=1	[more]
A0A0D2PU79_GOSRA	3.5e-40	66.41	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G168300 PE=4 SV=1	[more]
B9GMJ4_POPTR	5.0e-39	70.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13970g PE=4 SV=2	[more]

BLAST of Csa6G365140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43250.1	1.1e-37	63.31	nuclear factor Y, subunit C13	[more]
AT3G48590.1	8.3e-09	37.78	nuclear factor Y, subunit C1	[more]
AT5G63470.1	8.3e-09	37.78	nuclear factor Y, subunit C4	[more]
AT3G12480.1	1.1e-08	41.10	nuclear factor Y, subunit C11	[more]
AT5G19490.1	2.4e-08	32.38	Histone superfamily protein	[more]

BLAST of Csa6G365140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452907\|ref\|XP_004144200.1\|	1.8e-69	100.00	PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus]	[more]
gi\|659089430\|ref\|XP_008445504.1\|	3.2e-63	94.89	PREDICTED: dr1-associated corepressor [Cucumis melo]	[more]
gi\|1009152915\|ref\|XP_015894354.1\|	2.8e-43	74.02	PREDICTED: nuclear transcription factor Y subunit gamma-like [Ziziphus jujuba]	[more]
gi\|225425432\|ref\|XP_002271716.1\|	1.8e-42	65.44	PREDICTED: chromatin accessibility complex protein 1 [Vitis vinifera]	[more]
gi\|255547732\|ref\|XP_002514923.1\|	1.6e-41	70.31	PREDICTED: negative cofactor 2 complex subunit alpha [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G365140.1	Csa6G365140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..76 score: 2.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 12..77 score: 1.9
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 13..91 score: 5.03
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 2..128 score: 1.0
None	No IPR available	PANTHER	PTHR10252:SF25	DNA POLYMERASE EPSILON SUBUNIT 4	coord: 2..128 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G365140	Cla021993	Watermelon (97103) v1	cuwmB456
Csa6G365140	MELO3C011458	Melon (DHL92) v3.5.1	cumeB466
Csa6G365140	ClCG08G010070	Watermelon (Charleston Gray)	cuwcgB496
Csa6G365140	MELO3C011458.2	Melon (DHL92) v3.6.1	cumedB447
Csa6G365140	Cla97C08G152900	Watermelon (97103) v2	cuwmbB487
Csa6G365140	Bhi04G001160	Wax gourd	cuwgoB587
Csa6G365140	CSPI06G19320	Wild cucumber (PI 183967)	cpicuB313
Csa6G365140	CmaCh12G000750	Cucurbita maxima (Rimu)	cmacuB197
Csa6G365140	CmoCh12G000590	Cucurbita moschata (Rifu)	cmocuB175
Csa6G365140	Cp4.1LG11g03620	Cucurbita pepo (Zucchini)	cpecuB119
Csa6G365140	Cp4.1LG07g00750	Cucurbita pepo (Zucchini)	cpecuB843

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G365140	Cucurbita maxima (Rimu)	cmacuB191
Csa6G365140	Cucurbita maxima (Rimu)	cmacuB805
Csa6G365140	Cucurbita moschata (Rifu)	cmocuB183
Csa6G365140	Cucurbita moschata (Rifu)	cmocuB796
Csa6G365140	Cucurbita pepo (Zucchini)	cpecuB837
Csa6G365140	Bottle gourd (USVL1VR-Ls)	culsiB470
Csa6G365140	Cucumber (Gy14) v2	cgybcuB281
Csa6G365140	Silver-seed gourd	carcuB0158
Csa6G365140	Silver-seed gourd	carcuB0649
Csa6G365140	Wax gourd	cuwgoB575
Csa6G365140	Cucumber (Gy14) v1	cgycuB041