Csa6G344260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G344260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 15642911 .. 15643186 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTCGATTTATGGATGCAAAAATATGGGGTCAAAGGCGTCAAAATCGTTTAGTAGTGAAGATGTCTAGACTCCTTCTCGAGCTTTCGAGAACAGGGATCATGCCTCACTTGACCAAGCTCATTCCACATCGTATCATGGAGATCAAACAGATTGCTCACCTACTACCAACTCTTGTTATAAATAACAAGACACATATTAATTCGATAGCCAACAACGGAATCGGCTTCACTTGGAACCCACAAGAGTCGATACTTCAAGTGGAGTATTGA

mRNA sequence

ATGAGAGGTCGATTTATGGATGCAAAAATATGGGGTCAAAGGCGTCAAAATCGTTTAGTAGTGAAGATGTCTAGACTCCTTCTCGAGCTTTCGAGAACAGGGATCATGCCTCACTTGACCAAGCTCATTCCACATCGTATCATGGAGATCAAACAGATTGCTCACCTACTACCAACTCTTGTTATAAATAACAAGACACATATTAATTCGATAGCCAACAACGGAATCGGCTTCACTTGGAACCCACAAGAGTCGATACTTCAAGTGGAGTATTGA

Coding sequence (CDS)

ATGAGAGGTCGATTTATGGATGCAAAAATATGGGGTCAAAGGCGTCAAAATCGTTTAGTAGTGAAGATGTCTAGACTCCTTCTCGAGCTTTCGAGAACAGGGATCATGCCTCACTTGACCAAGCTCATTCCACATCGTATCATGGAGATCAAACAGATTGCTCACCTACTACCAACTCTTGTTATAAATAACAAGACACATATTAATTCGATAGCCAACAACGGAATCGGCTTCACTTGGAACCCACAAGAGTCGATACTTCAAGTGGAGTATTGA

Protein sequence

MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTLVINNKTHINSIANNGIGFTWNPQESILQVEY*
Homology
[Close]
BLAST of Csa6G344260 vs. TrEMBL
Match: A0A0A0KGN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344260 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.0e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTL 60
          MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTL
Sbjct: 1  MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTL 60

Query: 61 VINNKTHINSIANNGIGFTWNPQESILQVEY 92
          VINNKTHINSIANNGIGFTWNPQESILQVEY
Sbjct: 61 VINNKTHINSIANNGIGFTWNPQESILQVEY 91

[Close]
BLAST of Csa6G344260 vs. NCBI nr
Match: gi|700192293|gb|KGN47497.1| (hypothetical protein Csa_6G344260 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTL 60
          MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTL
Sbjct: 1  MRGRFMDAKIWGQRRQNRLVVKMSRLLLELSRTGIMPHLTKLIPHRIMEIKQIAHLLPTL 60

Query: 61 VINNKTHINSIANNGIGFTWNPQESILQVEY 92
          VINNKTHINSIANNGIGFTWNPQESILQVEY
Sbjct: 61 VINNKTHINSIANNGIGFTWNPQESILQVEY 91

The following BLAST results are available for this feature:
BLAST of Csa6G344260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGN7_CUCSA2.0e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344260 PE=4 SV=1[more]
BLAST of Csa6G344260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192293|gb|KGN47497.1|2.9e-44100.00hypothetical protein Csa_6G344260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G344260.1Csa6G344260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G344260CSPI06G18220Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G344260Cucurbita pepo (Zucchini)cpecuB200
Csa6G344260Cucurbita pepo (Zucchini)cpecuB463
Csa6G344260Cucurbita pepo (Zucchini)cpecuB795
Csa6G344260Bottle gourd (USVL1VR-Ls)culsiB481
Csa6G344260Cucumber (Gy14) v2cgybcuB281
Csa6G344260Melon (DHL92) v3.6.1cumedB450
Csa6G344260Silver-seed gourdcarcuB0067
Csa6G344260Silver-seed gourdcarcuB0852
Csa6G344260Watermelon (97103) v2cuwmbB498
Csa6G344260Wax gourdcuwgoB573
Csa6G344260Cucumber (Gy14) v1cgycuB074
Csa6G344260Cucurbita maxima (Rimu)cmacuB038
Csa6G344260Cucurbita maxima (Rimu)cmacuB311
Csa6G344260Cucurbita maxima (Rimu)cmacuB771
Csa6G344260Cucurbita moschata (Rifu)cmocuB026
Csa6G344260Cucurbita moschata (Rifu)cmocuB299
Csa6G344260Cucurbita moschata (Rifu)cmocuB762
Csa6G344260Melon (DHL92) v3.5.1cumeB468
Csa6G344260Watermelon (Charleston Gray)cuwcgB507
Csa6G344260Watermelon (97103) v1cuwmB468