Csa6G318690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G318690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 15023697 .. 15024194 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAATAAAGAATAACATATCTCTCTCTTTTTTTCCTACCAAAATCATGGGATTTCTGAGAGAAAGAGAAATTAGGGGTTCTCGTGGTGACCTGGCGAAGATTGGGAGAGAGGGGTTCCAAATAATTGATGAATACTTTGGTCGAGCATCGTCCACAGGGGCGAGACGGGTGGCGGCGAAGACGGCAAGGCCAGCTTTGCCGCAACCACCACGTAAGGCGGAGCAGCCTCCAAGGATAAGGAAGGAAAAACCCGTGGCCGCCGTGACCTCCGATCAAGTGGCTAAACATGGCGGCGGAACCGTGATAACAACTTGGCGTCCGTATGCAAAATGAATTTTAGCTTTGTACAACCTCTAGAAACTAGAACTACTTGGTGGTCATAGTATATATATATCATAAAGTACAGCTCTAGTTTGCTTTCTTGGTTTGCTATGTAGTATATCAATAAGTTAAGAAATATATTTGATTTACTACTTATGAAATCTCTAACAGTATA

mRNA sequence

ATGGGATTTCTGAGAGAAAGAGAAATTAGGGGTTCTCGTGGTGACCTGGCGAAGATTGGGAGAGAGGGGTTCCAAATAATTGATGAATACTTTGGTCGAGCATCGTCCACAGGGGCGAGACGGGTGGCGGCGAAGACGGCAAGGCCAGCTTTGCCGCAACCACCACGTAAGGCGGAGCAGCCTCCAAGGATAAGGAAGGAAAAACCCGTGGCCGCCGTGACCTCCGATCAAGTGGCTAAACATGGCGGCGGAACCGTGATAACAACTTGGCGTCCGTATGCAAAATGA

Coding sequence (CDS)

ATGGGATTTCTGAGAGAAAGAGAAATTAGGGGTTCTCGTGGTGACCTGGCGAAGATTGGGAGAGAGGGGTTCCAAATAATTGATGAATACTTTGGTCGAGCATCGTCCACAGGGGCGAGACGGGTGGCGGCGAAGACGGCAAGGCCAGCTTTGCCGCAACCACCACGTAAGGCGGAGCAGCCTCCAAGGATAAGGAAGGAAAAACCCGTGGCCGCCGTGACCTCCGATCAAGTGGCTAAACATGGCGGCGGAACCGTGATAACAACTTGGCGTCCGTATGCAAAATGA

Protein sequence

MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK*

Homology

[Close]

BLAST of Csa6G318690 vs. TrEMBL
Match: A0A0A0KG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60
          MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 96
          PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK
Sbjct: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of Csa6G318690 vs. TrEMBL
Match: A0A0A0KI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-21
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKT-ARPALPQPPRK-AEQPP 64
          REREI  +  +LA+IG EGF++ID++FGRAS+TG RRV A T  RPA  QPPRK AEQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 65 RIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 96
             KEK  A VTSD +AK  GG VITTWR YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

[Close]

BLAST of Csa6G318690 vs. NCBI nr
Match: gi|700192218|gb|KGN47422.1| (hypothetical protein Csa_6G318690 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60
          MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 96
          PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK
Sbjct: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of Csa6G318690 vs. NCBI nr
Match: gi|700192217|gb|KGN47421.1| (hypothetical protein Csa_6G318680 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-21
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKT-ARPALPQPPRK-AEQPP 64
          REREI  +  +LA+IG EGF++ID++FGRAS+TG RRV A T  RPA  QPPRK AEQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 65 RIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 96
             KEK  A VTSD +AK  GG VITTWR YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

The following BLAST results are available for this feature:

BLAST of Csa6G318690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG95_CUCSA	1.3e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1	[more]
A0A0A0KI19_CUCSA	5.5e-21	64.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1	[more]

BLAST of Csa6G318690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192218\|gb\|KGN47422.1\|	1.9e-46	100.00	hypothetical protein Csa_6G318690 [Cucumis sativus]	[more]
gi\|700192217\|gb\|KGN47421.1\|	8.0e-21	64.52	hypothetical protein Csa_6G318680 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU151224	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G318690.1	Csa6G318690.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU151224	CU151224	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G318690	Melon (DHL92) v3.6.1	cumedB426
Csa6G318690	Melon (DHL92) v3.6.1	cumedB477
Csa6G318690	Silver-seed gourd	carcuB0079
Csa6G318690	Silver-seed gourd	carcuB0307
Csa6G318690	Silver-seed gourd	carcuB0724
Csa6G318690	Watermelon (97103) v2	cuwmbB465
Csa6G318690	Watermelon (97103) v2	cuwmbB469
Csa6G318690	Wax gourd	cuwgoB538
Csa6G318690	Wax gourd	cuwgoB558
Csa6G318690	Cucumber (Chinese Long) v2	cucuB120
Csa6G318690	Cucumber (Gy14) v1	cgycuB064
Csa6G318690	Cucumber (Gy14) v1	cgycuB371
Csa6G318690	Cucurbita maxima (Rimu)	cmacuB378
Csa6G318690	Cucurbita maxima (Rimu)	cmacuB845
Csa6G318690	Cucurbita maxima (Rimu)	cmacuB904
Csa6G318690	Cucurbita moschata (Rifu)	cmocuB254
Csa6G318690	Cucurbita moschata (Rifu)	cmocuB368
Csa6G318690	Cucurbita moschata (Rifu)	cmocuB891
Csa6G318690	Melon (DHL92) v3.5.1	cumeB445
Csa6G318690	Melon (DHL92) v3.5.1	cumeB497
Csa6G318690	Watermelon (Charleston Gray)	cuwcgB428
Csa6G318690	Watermelon (Charleston Gray)	cuwcgB474
Csa6G318690	Watermelon (Charleston Gray)	cuwcgB477
Csa6G318690	Watermelon (97103) v1	cuwmB497
Csa6G318690	Watermelon (97103) v1	cuwmB538
Csa6G318690	Cucurbita pepo (Zucchini)	cpecuB151
Csa6G318690	Cucurbita pepo (Zucchini)	cpecuB324
Csa6G318690	Cucurbita pepo (Zucchini)	cpecuB625
Csa6G318690	Cucurbita pepo (Zucchini)	cpecuB875
Csa6G318690	Bottle gourd (USVL1VR-Ls)	culsiB403
Csa6G318690	Bottle gourd (USVL1VR-Ls)	culsiB463
Csa6G318690	Cucumber (Gy14) v2	cgybcuB146
Csa6G318690	Cucumber (Gy14) v2	cgybcuB281