Csa6G308940 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G308940
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Glutamate receptor
Location	Chr6 : 14736114 .. 14736583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAAGGCATGGGTTTTGAAATGTTGAAGATCGGTGCACTCTTCCTTAACATATTAGTACTGTCGGTAGTGGCAGCAGAGGCGGACAAGACGGCTGCGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGTTGTTGGGAAGATGGGTTTGAGTTGCACTAATATGACGCTCTCTGATTTTTATGCCAATCGAAGTTATTATAAGACGAAATTGATTCTCAATCCCATGGACTCCAATGGAACGAACTATTGTTGGTGCAACTACAACAGATTTGTTTTAATATTTATTCTTATTTTTTATCAATTCAAAACGTTTGAAAAAACAAGGTTAAGGGATTTGAAACCCTTTAGTCGAGAATTCCACATTGAAAAAATGTCAAGTGATCGTCTCACTTTTTTTTTCATAAGATACCTGAACTAATTTGGATTGGAATAAAATCAAGAATCGACCAAAACTAA

mRNA sequence

ATGAGGGAAGGCATGGGTTTTGAAATGTTGAAGATCGGTGCACTCTTCCTTAACATATTAGTACTGTCGGTAGTGGCAGCAGAGGCGGACAAGACGGCTGCGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGTTGTTGGGAAGATGGGTTTGAGTTGCACTAATATGACGCTCTCTGATTTTTATGCCAATCGAAGTTATTATAAGACGAAATTGATTCTCAATCCCATGGACTCCAATGGAACGAACTATTGTTGGTGCAACTACAACAGATTTATACCTGAACTAATTTGGATTGGAATAAAATCAAGAATCGACCAAAACTAA

Coding sequence (CDS)

ATGAGGGAAGGCATGGGTTTTGAAATGTTGAAGATCGGTGCACTCTTCCTTAACATATTAGTACTGTCGGTAGTGGCAGCAGAGGCGGACAAGACGGCTGCGGCGGTAAACTTGAAGGTGGGTGTGGTTTTGGATTTGAATGTTGTTGGGAAGATGGGTTTGAGTTGCACTAATATGACGCTCTCTGATTTTTATGCCAATCGAAGTTATTATAAGACGAAATTGATTCTCAATCCCATGGACTCCAATGGAACGAACTATTGTTGGTGCAACTACAACAGATTTATACCTGAACTAATTTGGATTGGAATAAAATCAAGAATCGACCAAAACTAA

Protein sequence

MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMTLSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN*

Homology

[Close]

BLAST of Csa6G308940 vs. TrEMBL
Match: A0A0A0KCD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G308940 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMT 60
           MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMT
Sbjct: 1   MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMT 60

Query: 61  LSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN 112
           LSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN
Sbjct: 61  LSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN 111

[Close]

BLAST of Csa6G308940 vs. TrEMBL
Match: A0A0A0LPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383900 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.9e-15
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 6  GFEMLKIGALFLNILVLSVVAAEADK--TAAAVNLKVGVVLDLNV-VGKMGLSCTNMTLS 65
          GF +L +  + LNI+++SV A E ++  TAA V +KVG VLDLN   GKMGLSC +M L+
Sbjct: 11 GFRVLAVIVILLNIVIMSVAAQEEEEVATAAVVKVKVGAVLDLNFSFGKMGLSCISMALA 70

Query: 66 DFYANRSYYKTKLILNPMDSNGT 86
          DFY++RS YKT++ILN +DSN T
Sbjct: 71 DFYSSRSRYKTRVILNTIDSNNT 93

[Close]

BLAST of Csa6G308940 vs. TrEMBL
Match: A0A0A0LSQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383920 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 4  GMGFEMLKIGA--LFLNILVLS---VVAAEADK---TAAAVNLKVGVVLDLNV-VGKMGL 63
          G GF ++ +    +FLNIL+ +   V     DK    AAAV +KVGVVLDLNV VGK+ L
Sbjct: 8  GGGFRVVVVVVVVIFLNILLRAGAEVTERLEDKEAAAAAAVKVKVGVVLDLNVIVGKISL 67

Query: 64 SCTNMTLSDFYANRSYYKTKLILNPMDSNGT 86
          SC +M L+DFYA RSYYKT++ILNP+DSNG+
Sbjct: 68 SCISMALADFYAPRSYYKTRIILNPIDSNGS 98

[Close]

BLAST of Csa6G308940 vs. TrEMBL
Match: A0A0A0LMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383370 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-12
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 1  MREGMGFEMLKIGALFLNILVLSVVAA-----EADKTAAAVNLKVGVVLDLNVVGKMGLS 60
          MR   G +      L + +L  + VAA     E +K   A+ +KVGVVLD +  GK+ LS
Sbjct: 1  MRRRKGMKSGSWVLLMMLLLATATVAAKEEEEEKEKATGALKVKVGVVLDSDDYGKVDLS 60

Query: 61 CTNMTLSDFYANRSYYKTKLILNPMDSNGT 86
          C +M LSDFYA+RS++KT+++L PMDSNGT
Sbjct: 61 CISMALSDFYASRSHFKTRVVLKPMDSNGT 90

[Close]

BLAST of Csa6G308940 vs. TrEMBL
Match: A0A0D2PLI2_GOSRA (Glutamate receptor OS=Gossypium raimondii GN=B456_001G039900 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 15 LFLNILVLSVVAAEADKTA--AAVNLKVGVVLDLN-VVGKMGLSCTNMTLSDFYANRSYY 74
          LFLN+ +   V A++  T   A + +KVGVVLD++ +VGK+G+SC NM LSDFYA   +Y
Sbjct: 19 LFLNVCLSEGVVAQSQNTTGDATIPVKVGVVLDMDSLVGKIGMSCMNMALSDFYATHPHY 78

Query: 75 KTKLILNPMDSNG 85
          KT+L+ N  DS G
Sbjct: 79 KTRLVFNTKDSMG 91

[Close]

BLAST of Csa6G308940 vs. NCBI nr
Match: gi|700192181|gb|KGN47385.1| (hypothetical protein Csa_6G308940 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMT 60
           MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMT
Sbjct: 1   MREGMGFEMLKIGALFLNILVLSVVAAEADKTAAAVNLKVGVVLDLNVVGKMGLSCTNMT 60

Query: 61  LSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN 112
           LSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN
Sbjct: 61  LSDFYANRSYYKTKLILNPMDSNGTNYCWCNYNRFIPELIWIGIKSRIDQN 111

[Close]

BLAST of Csa6G308940 vs. NCBI nr
Match: gi|659089049|ref|XP_008445301.1| (PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 4  GMGFEMLKIGALFLNILVLSVVAA------EADKTAAAVNLKVGVVLDLNV-VGKMGLSC 63
          G GF ++ +  +FLNIL+ +V         +    AAAV +KVGVVLDLNV VGKM LSC
Sbjct: 8  GGGFRVVVVVVIFLNILLTAVAKVTEPLEEKEAAAAAAVKVKVGVVLDLNVIVGKMSLSC 67

Query: 64 TNMTLSDFYANRSYYKTKLILNPMDSNGT 86
           +M L+DFYA+RSYYKT++ILNP+DSNG+
Sbjct: 68 ISMALADFYASRSYYKTRIILNPIDSNGS 96

[Close]

BLAST of Csa6G308940 vs. NCBI nr
Match: gi|659089047|ref|XP_008445300.1| (PREDICTED: glutamate receptor 2.1-like isoform X1 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 4  GMGFEMLKIGALFLNILVLSVVAA------EADKTAAAVNLKVGVVLDLNV-VGKMGLSC 63
          G GF ++ +  +FLNIL+ +V         +    AAAV +KVGVVLDLNV VGKM LSC
Sbjct: 8  GGGFRVVVVVVIFLNILLTAVAKVTEPLEEKEAAAAAAVKVKVGVVLDLNVIVGKMSLSC 67

Query: 64 TNMTLSDFYANRSYYKTKLILNPMDSNGT 86
           +M L+DFYA+RSYYKT++ILNP+DSNG+
Sbjct: 68 ISMALADFYASRSYYKTRIILNPIDSNGS 96

[Close]

BLAST of Csa6G308940 vs. NCBI nr
Match: gi|700207900|gb|KGN63019.1| (hypothetical protein Csa_2G383900 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-15
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 6  GFEMLKIGALFLNILVLSVVAAEADK--TAAAVNLKVGVVLDLNV-VGKMGLSCTNMTLS 65
          GF +L +  + LNI+++SV A E ++  TAA V +KVG VLDLN   GKMGLSC +M L+
Sbjct: 11 GFRVLAVIVILLNIVIMSVAAQEEEEVATAAVVKVKVGAVLDLNFSFGKMGLSCISMALA 70

Query: 66 DFYANRSYYKTKLILNPMDSNGT 86
          DFY++RS YKT++ILN +DSN T
Sbjct: 71 DFYSSRSRYKTRVILNTIDSNNT 93

[Close]

BLAST of Csa6G308940 vs. NCBI nr
Match: gi|778674398|ref|XP_011650202.1| (PREDICTED: glutamate receptor 2.5-like [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-15
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 6  GFEMLKIGALFLNILVLSVVAAEADK--TAAAVNLKVGVVLDLNV-VGKMGLSCTNMTLS 65
          GF +L +  + LNI+++SV A E ++  TAA V +KVG VLDLN   GKMGLSC +M L+
Sbjct: 11 GFRVLAVIVILLNIVIMSVAAQEEEEVATAAVVKVKVGAVLDLNFSFGKMGLSCISMALA 70

Query: 66 DFYANRSYYKTKLILNPMDSNGT 86
          DFY++RS YKT++ILN +DSN T
Sbjct: 71 DFYSSRSRYKTRVILNTIDSNNT 93

The following BLAST results are available for this feature:

BLAST of Csa6G308940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCD3_CUCSA	1.2e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G308940 PE=4 SV=1	[more]
A0A0A0LPV9_CUCSA	6.9e-15	55.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383900 PE=3 SV=1	[more]
A0A0A0LSQ2_CUCSA	1.0e-13	56.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383920 PE=4 SV=1	[more]
A0A0A0LMA6_CUCSA	9.4e-12	46.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383370 PE=3 SV=1	[more]
A0A0D2PLI2_GOSRA	5.1e-10	50.68	Glutamate receptor OS=Gossypium raimondii GN=B456_001G039900 PE=3 SV=1	[more]

BLAST of Csa6G308940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192181\|gb\|KGN47385.1\|	1.8e-56	100.00	hypothetical protein Csa_6G308940 [Cucumis sativus]	[more]
gi\|659089049\|ref\|XP_008445301.1\|	3.1e-16	56.18	PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo]	[more]
gi\|659089047\|ref\|XP_008445300.1\|	3.1e-16	56.18	PREDICTED: glutamate receptor 2.1-like isoform X1 [Cucumis melo]	[more]
gi\|700207900\|gb\|KGN63019.1\|	9.9e-15	55.42	hypothetical protein Csa_2G383900 [Cucumis sativus]	[more]
gi\|778674398\|ref\|XP_011650202.1\|	9.9e-15	55.42	PREDICTED: glutamate receptor 2.5-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007268	chemical synaptic transmission
biological_process	GO:0035235	ionotropic glutamate receptor signaling pathway
biological_process	GO:0006811	ion transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004970	ionotropic glutamate receptor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G308940.1	Csa6G308940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34836	FAMILY NOT NAMED	coord: 3..84 score: 6.4
None	No IPR available	PANTHER	PTHR34836:SF1	SUBFAMILY NOT NAMED	coord: 3..84 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G308940	CSPI06G17040	Wild cucumber (PI 183967)	cpicuB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G308940	Wax gourd	cuwgoB547
Csa6G308940	Wax gourd	cuwgoB558
Csa6G308940	Cucumber (Chinese Long) v2	cucuB120
Csa6G308940	Cucumber (Gy14) v1	cgycuB371
Csa6G308940	Cucumber (Gy14) v1	cgycuB464
Csa6G308940	Cucurbita maxima (Rimu)	cmacuB378
Csa6G308940	Cucurbita maxima (Rimu)	cmacuB845
Csa6G308940	Cucurbita maxima (Rimu)	cmacuB904
Csa6G308940	Cucurbita moschata (Rifu)	cmocuB254
Csa6G308940	Cucurbita moschata (Rifu)	cmocuB368
Csa6G308940	Cucurbita moschata (Rifu)	cmocuB891
Csa6G308940	Melon (DHL92) v3.5.1	cumeB445
Csa6G308940	Melon (DHL92) v3.5.1	cumeB497
Csa6G308940	Watermelon (Charleston Gray)	cuwcgB474
Csa6G308940	Watermelon (Charleston Gray)	cuwcgB477
Csa6G308940	Watermelon (97103) v1	cuwmB497
Csa6G308940	Watermelon (97103) v1	cuwmB538
Csa6G308940	Cucurbita pepo (Zucchini)	cpecuB151
Csa6G308940	Cucurbita pepo (Zucchini)	cpecuB324
Csa6G308940	Cucurbita pepo (Zucchini)	cpecuB625
Csa6G308940	Cucurbita pepo (Zucchini)	cpecuB875
Csa6G308940	Bottle gourd (USVL1VR-Ls)	culsiB403
Csa6G308940	Bottle gourd (USVL1VR-Ls)	culsiB463
Csa6G308940	Cucumber (Gy14) v2	cgybcuB146
Csa6G308940	Cucumber (Gy14) v2	cgybcuB281
Csa6G308940	Melon (DHL92) v3.6.1	cumedB426
Csa6G308940	Melon (DHL92) v3.6.1	cumedB477
Csa6G308940	Silver-seed gourd	carcuB0078
Csa6G308940	Silver-seed gourd	carcuB0079
Csa6G308940	Silver-seed gourd	carcuB0307
Csa6G308940	Silver-seed gourd	carcuB0724
Csa6G308940	Watermelon (97103) v2	cuwmbB465
Csa6G308940	Watermelon (97103) v2	cuwmbB469