Csa6G305300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G305300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative chromodomain-helicase dna-binding protein; contains IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
Location	Chr6 : 14610438 .. 14611723 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGATTAGCCACATACTTCTACTCAGTAATTCAGCATTAAGATGTATGGAAGATTTTCAGACAATTCTTTCCTTGGTATCACTTATTTATGTTCTTGTATTCATGCTTGCAGGTGGAAAATGAACTGCCAGAAAAGATTGAAAGACTTGTAAGATGTGAGGCTTCTGCATATCAGAAACTTTTGATGAGGAGAGTAGAGGATAACCTTGGTTCAATAGGAAGCACAAAGGTTCGTTCACTTCATTTCTTTTTCTACGTACTTTTCTTGAAGAAATTTGCAATTCTAATTTATATGATAATCCAATTGTTGCCTACACTCTTACATATTCTATCTTCAGGTCCGGTCAGTGCATAATTCAGTGATGGAGCTGCGTAATATTTGCAATCATCCTTATCTAAGCCAACTTCATGCAGAGGAGGCATGTCTTTCTTTTCTTTTTATAATGCAATTTATTTATGGATTGGTTTTTGGATGAGCAAATTGAGGGAAGGGTGAAGGTAGAATGTTCTGCCCCACCCCACTCCACTGCCTTGTATCCTTGATCAAATGTTTTATCCTTACCTTCTGTTCTTTTTGACAGTGCACAACCTATAGTTGGAAGCTTAAACTACCCTACTTCTTGCTTGTTGGTATTTGTCCTTACGAAACATCTTTATTCTTGTCTAGGTTGATAATTTGATACCTAAGCATTACCTGCCACCCATTGTTAGACTCTGTGGGAAGCTGGAGATGTTAGATAGAATATTACCAAAGCTAAAAGCAACTGATCATCGGGTAAGTAGTTCTTGGACAGACAATATCAAGATAGAATGTTGATGAAAATCCAATACTATATGTTTTACCCATTATTTTTCCACTGAATTTGTTTTCTTATATTTTTTATTATAGATAGTAACATCTATTCACTTTTCATTTTAATATATACCTTCTACTCGAGTTTGATTAGTTTCCCAAGTTGTAAATCTTTGTTTATATTTTTTTCATTAGTTTTGTCTACGTCAATAATTTCATTTCAGAACTGATTTTTGCTCAGTTTTTCATCATGTATCCTTTTATATATAGATGTTTCCAATTTCATTTTCTGTGGTTGGCTTTTATTTTTGCAGGTTCTCTTCTTTTCCACCATGACTAGACTGCTAGATGTTATGGAGGAATATCTTCAGTGGAAACAATATCGATATCTACGATTGGATGGACATACGTCTGGGGGTGATCGTGGTGCACTAATTGAGTTATTTAACCGGCAAAATTCTCCCTACTTTATATTCCTTCTTAGGTAA

mRNA sequence

ATGGCTAGATTAGCCACATACTTCTACTCAGTGGAAAATGAACTGCCAGAAAAGATTGAAAGACTTGTAAGATGTGAGGCTTCTGCATATCAGAAACTTTTGATGAGGAGAGTAGAGGATAACCTTGGTTCAATAGGAAGCACAAAGGTCCGGTCAGTGCATAATTCAGTGATGGAGCTGCGTAATATTTGCAATCATCCTTATCTAAGCCAACTTCATGCAGAGGAGGCATGTCTTTCTTTTCTTTTTATAATGCAATTTATTTATGGATTGGTTGATAATTTGATACCTAAGCATTACCTGCCACCCATTGTTAGACTCTGTGGGAAGCTGGAGATGTTAGATAGAATATTACCAAAGCTAAAAGCAACTGATCATCGGGTTCTCTTCTTTTCCACCATGACTAGACTGCTAGATGTTATGGAGGAATATCTTCAGTGGAAACAATATCGATATCTACGATTGGATGGACATACGTCTGGGGGTGATCGTGGTGCACTAATTGAGTTATTTAACCGGCAAAATTCTCCCTACTTTATATTCCTTCTTAGGTAA

Coding sequence (CDS)

ATGGCTAGATTAGCCACATACTTCTACTCAGTGGAAAATGAACTGCCAGAAAAGATTGAAAGACTTGTAAGATGTGAGGCTTCTGCATATCAGAAACTTTTGATGAGGAGAGTAGAGGATAACCTTGGTTCAATAGGAAGCACAAAGGTCCGGTCAGTGCATAATTCAGTGATGGAGCTGCGTAATATTTGCAATCATCCTTATCTAAGCCAACTTCATGCAGAGGAGGCATGTCTTTCTTTTCTTTTTATAATGCAATTTATTTATGGATTGGTTGATAATTTGATACCTAAGCATTACCTGCCACCCATTGTTAGACTCTGTGGGAAGCTGGAGATGTTAGATAGAATATTACCAAAGCTAAAAGCAACTGATCATCGGGTTCTCTTCTTTTCCACCATGACTAGACTGCTAGATGTTATGGAGGAATATCTTCAGTGGAAACAATATCGATATCTACGATTGGATGGACATACGTCTGGGGGTGATCGTGGTGCACTAATTGAGTTATTTAACCGGCAAAATTCTCCCTACTTTATATTCCTTCTTAGGTAA

Protein sequence

MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLLR*

Homology

[Close]

BLAST of Csa6G305300 vs. Swiss-Prot
Match: SYD_ARATH (Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana GN=SYD PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.6e-72
Identity = 135/175 (77.14%), Postives = 148/175 (84.57%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERL+RCEASAYQKLLM+RVEDNLGSIG+ K R+VHNSVMELRNICNHPY
Sbjct: 988  HKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPY 1047

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLH+EE               V+N+IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRV
Sbjct: 1048 LSQLHSEE---------------VNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRV 1107

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVME+YL  K Y+YLRLDG TSGGDRGALI+ FN+  SP+FIFLL
Sbjct: 1108 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLL 1147

[Close]

BLAST of Csa6G305300 vs. Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-33
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 1


Query: 11   VENELPEKIERLVRCEASAYQKLLMRRVEDN--LGSIGSTK-------VRSVHNSVMELR 70
            VE +LPEK+E +++C+ SA Q++L R ++    L + GS K        +++ N++M+LR
Sbjct: 984  VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043

Query: 71   NICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKL 130
             ICNHPY+ Q H EE   SF   + F  G+V  L        + R  GK E+LDRILPKL
Sbjct: 1044 KICNHPYMFQ-HIEE---SFSEHLGFTGGIVQGL-------DLYRASGKFELLDRILPKL 1103

Query: 131  KATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIF 184
            +AT+H+VL F  MT L+ +ME+Y  ++ ++YLRLDG T   DRG L++ FN   S YFIF
Sbjct: 1104 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIF 1154

[Close]

BLAST of Csa6G305300 vs. Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-33
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 1


Query: 11   VENELPEKIERLVRCEASAYQKLLMRRVEDN--LGSIGSTK-------VRSVHNSVMELR 70
            VE +LPEK+E +++C+ SA Q++L R ++    L + GS K        +++ N++M+LR
Sbjct: 984  VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043

Query: 71   NICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKL 130
             ICNHPY+ Q H EE   SF   + F  G+V  L        + R  GK E+LDRILPKL
Sbjct: 1044 KICNHPYMFQ-HIEE---SFSEHLGFTGGIVQGL-------DLYRASGKFELLDRILPKL 1103

Query: 131  KATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIF 184
            +AT+H+VL F  MT L+ +ME+Y  ++ ++YLRLDG T   DRG L++ FN   S YFIF
Sbjct: 1104 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIF 1154

[Close]

BLAST of Csa6G305300 vs. Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-33
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 1


Query: 11   VENELPEKIERLVRCEASAYQKLLMRRVEDN--LGSIGSTK-------VRSVHNSVMELR 70
            VE +LPEK+E +++C+ SA Q++L R ++    L + GS K        +++ N++M+LR
Sbjct: 984  VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043

Query: 71   NICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKL 130
             ICNHPY+ Q H EE   SF   + F  G+V  L        + R  GK E+LDRILPKL
Sbjct: 1044 KICNHPYMFQ-HIEE---SFSEHLGFTGGIVQGL-------DLYRASGKFELLDRILPKL 1103

Query: 131  KATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIF 184
            +AT+H+VL F  MT L+ +ME+Y  ++ ++YLRLDG T   DRG L++ FN   S YFIF
Sbjct: 1104 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIF 1154

[Close]

BLAST of Csa6G305300 vs. Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-33
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 1


Query: 11   VENELPEKIERLVRCEASAYQKLLMRRVEDN--LGSIGSTK-------VRSVHNSVMELR 70
            VE +LPEK+E +++C+ SA Q++L R ++    L + GS K        +++ N++M+LR
Sbjct: 976  VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1035

Query: 71   NICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKL 130
             ICNHPY+ Q H EE   SF   + F  G+V  L        + R  GK E+LDRILPKL
Sbjct: 1036 KICNHPYMFQ-HIEE---SFSEHLGFTGGIVQGL-------DLYRASGKFELLDRILPKL 1095

Query: 131  KATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIF 184
            +AT+H+VL F  MT L+ +ME+Y  ++ ++YLRLDG T   DRG L++ FN   S YFIF
Sbjct: 1096 RATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIF 1146

[Close]

BLAST of Csa6G305300 vs. TrEMBL
Match: A0A0A0KG41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G305300 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.4e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL 60
           MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL
Sbjct: 1   MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL 60

Query: 61  RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK 120
           RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK
Sbjct: 61  RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK 120

Query: 121 LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI 180
           LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI
Sbjct: 121 LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI 180

Query: 181 FLLR 185
           FLLR
Sbjct: 181 FLLR 184

[Close]

BLAST of Csa6G305300 vs. TrEMBL
Match: A0A0A0L8X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G151390 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.9e-82
Identity = 158/175 (90.29%), Postives = 159/175 (90.86%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY
Sbjct: 1258 HKVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 1317

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLHAEE               VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV
Sbjct: 1318 LSQLHAEE---------------VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 1377

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL
Sbjct: 1378 LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 1417

[Close]

BLAST of Csa6G305300 vs. TrEMBL
Match: F6HDI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02020 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 8.1e-77
Identity = 146/175 (83.43%), Postives = 155/175 (88.57%), Query Frame = 1


Query: 9   YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
           + VENELPEKIERLVRCEASAYQKLLM+RVE+NLGSIGSTK RSVHNSVMELRNICNHPY
Sbjct: 230 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGSTKARSVHNSVMELRNICNHPY 289

Query: 69  LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
           LSQLHA+E               VDNLIPKH+LPP+VRLCGKLEMLDR+LPKLKATDHRV
Sbjct: 290 LSQLHADE---------------VDNLIPKHFLPPVVRLCGKLEMLDRLLPKLKATDHRV 349

Query: 129 LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
           LFFSTMTRLLDVMEEYL WKQYRYLRLDGHTSGGDRGALIE FN+ +SPYFIFLL
Sbjct: 350 LFFSTMTRLLDVMEEYLHWKQYRYLRLDGHTSGGDRGALIEQFNQPDSPYFIFLL 389

[Close]

BLAST of Csa6G305300 vs. TrEMBL
Match: U5G6B8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20050g PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.0e-75
Identity = 143/175 (81.71%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERLVRCEASAYQKLLM+RVEDNLGSIG+ K RSVHNSVMELRNICNHPY
Sbjct: 1177 HKVENELPEKIERLVRCEASAYQKLLMKRVEDNLGSIGNPKARSVHNSVMELRNICNHPY 1236

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLHA+E               VD LIPKH+LPPI+RLCGKLEMLDR+LPKLKATDHRV
Sbjct: 1237 LSQLHADE---------------VDTLIPKHFLPPIIRLCGKLEMLDRLLPKLKATDHRV 1296

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVMEEYL WKQYRYLRLDGHTSGGDRG+LI+ FN+Q+SPYFIFLL
Sbjct: 1297 LFFSTMTRLLDVMEEYLTWKQYRYLRLDGHTSGGDRGSLIDSFNQQDSPYFIFLL 1336

[Close]

BLAST of Csa6G305300 vs. TrEMBL
Match: A0A151ST92_CAJCA (Chromatin structure-remodeling complex subunit snf21 OS=Cajanus cajan GN=KK1_004331 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.0e-75
Identity = 144/175 (82.29%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERL+RCEAS+YQKLLM+RVE+NLGSIGS+K RSVHNSVMELRNICNHPY
Sbjct: 1056 HKVENELPEKIERLIRCEASSYQKLLMKRVEENLGSIGSSKARSVHNSVMELRNICNHPY 1115

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLHAEE               VDN IPKHYLPPI+RLCGKLEMLDR+LPKLKATDHRV
Sbjct: 1116 LSQLHAEE---------------VDNFIPKHYLPPIIRLCGKLEMLDRLLPKLKATDHRV 1175

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVMEEYL  KQYRYLRLDGHTSGGDRGALI+LFNR +SPYFIFLL
Sbjct: 1176 LFFSTMTRLLDVMEEYLALKQYRYLRLDGHTSGGDRGALIDLFNRTDSPYFIFLL 1215

[Close]

BLAST of Csa6G305300 vs. TAIR10
Match: AT2G28290.1 (AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 271.6 bits (693), Expect = 3.7e-73
Identity = 135/175 (77.14%), Postives = 148/175 (84.57%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERL+RCEASAYQKLLM+RVEDNLGSIG+ K R+VHNSVMELRNICNHPY
Sbjct: 988  HKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPY 1047

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLH+EE               V+N+IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRV
Sbjct: 1048 LSQLHSEE---------------VNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRV 1107

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVME+YL  K Y+YLRLDG TSGGDRGALI+ FN+  SP+FIFLL
Sbjct: 1108 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLL 1147

[Close]

BLAST of Csa6G305300 vs. TAIR10
Match: AT5G19310.1 (AT5G19310.1 Homeotic gene regulator)

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-32
Identity = 78/177 (44.07%), Postives = 101/177 (57.06%), Query Frame = 1


Query: 11  VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIG----STKVRSVHNSVMELRNICNH 70
           VE  LP K + +++C+ SA+QKL  ++V D +G +G    + K +S+ N  M+LR  CNH
Sbjct: 615 VEKFLPGKTQVILKCDMSAWQKLYYKQVTD-VGRVGLHSGNGKSKSLQNLTMQLRKCCNH 674

Query: 71  PYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDH 130
           PYL                    G   N+  K   P IVR  GK E+LDR+LPKLK   H
Sbjct: 675 PYL------------------FVGADYNMCKK---PEIVRASGKFELLDRLLPKLKKAGH 734

Query: 131 RVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
           R+L FS MTRL+D++E YL    Y YLRLDG T    RG L++ FN  +SPYF+FLL
Sbjct: 735 RILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLL 769

[Close]

BLAST of Csa6G305300 vs. TAIR10
Match: AT3G06010.1 (AT3G06010.1 Homeotic gene regulator)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-32
Identity = 79/177 (44.63%), Postives = 106/177 (59.89%), Query Frame = 1


Query: 11  VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIG----STKVRSVHNSVMELRNICNH 70
           VE  LP K + +++C+ SA+QK+  ++V D +G +G    S K +S+ N  M+LR  CNH
Sbjct: 633 VEKFLPGKTQVILKCDMSAWQKVYYKQVTD-MGRVGLQTGSGKSKSLQNLTMQLRKCCNH 692

Query: 71  PYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDH 130
           PYL                 F+ G   N+  K   P IVR  GK E+LDR+LPKL+   H
Sbjct: 693 PYL-----------------FVGGDY-NMWKK---PEIVRASGKFELLDRLLPKLRKAGH 752

Query: 131 RVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
           R+L FS MTRL+DV+E YL    Y+YLRLDG T    RG L++ FN  +SPYF+FLL
Sbjct: 753 RILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLL 787

[Close]

BLAST of Csa6G305300 vs. TAIR10
Match: AT2G46020.2 (AT2G46020.2 transcription regulatory protein SNF2, putative)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 75/193 (38.86%), Postives = 97/193 (50.26%), Query Frame = 1


Query: 11   VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKV-------------------- 70
            VE  LP K+  ++RC  SA Q      V D + + G+ +V                    
Sbjct: 1216 VEGSLPAKVSVVLRCRMSAIQSA----VYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIY 1275

Query: 71   RSVHNSVMELRNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGK 130
            R+++N  MELR  CNHP L+  +  +    FL                      VR CGK
Sbjct: 1276 RTLNNRCMELRKACNHPLLNYPYFNDFSKDFL----------------------VRSCGK 1335

Query: 131  LEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIEL 184
            L +LDRIL KL+ T HRVL FSTMT+LLD++EEYLQW++  Y R+DG TS  DR + I  
Sbjct: 1336 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVD 1382

[Close]

BLAST of Csa6G305300 vs. TAIR10
Match: AT5G18620.2 (AT5G18620.2 chromatin remodeling factor17)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 68/175 (38.86%), Postives = 96/175 (54.86%), Query Frame = 1


Query: 11  VENELPEKIERLVRCEASAYQKLLMRRV-EDNLGSI-GSTKVRSVHNSVMELRNICNHPY 70
           VE  LP K E +++   S  QK   + + + +L  + G  + + + N  M+LR  CNHPY
Sbjct: 414 VEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPY 473

Query: 71  LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 130
           L Q  AE             Y   D+L+            GK+ +LD++LPKLK  D RV
Sbjct: 474 LFQ-GAEPGPP---------YTTGDHLVTN---------AGKMVLLDKLLPKLKDRDSRV 533

Query: 131 LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
           L FS MTRLLD++E+YL ++ Y+Y R+DG+T G +R A IE +N+  S  F+FLL
Sbjct: 534 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLL 569

[Close]

BLAST of Csa6G305300 vs. NCBI nr
Match: gi|700192163|gb|KGN47367.1| (hypothetical protein Csa_6G305300 [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 2.0e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL 60
           MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL
Sbjct: 1   MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL 60

Query: 61  RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK 120
           RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK
Sbjct: 61  RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK 120

Query: 121 LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI 180
           LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI
Sbjct: 121 LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI 180

Query: 181 FLLR 185
           FLLR
Sbjct: 181 FLLR 184

[Close]

BLAST of Csa6G305300 vs. NCBI nr
Match: gi|778722207|ref|XP_011658432.1| (PREDICTED: chromatin structure-remodeling complex protein SYD-like [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 2.2e-88
Identity = 169/184 (91.85%), Postives = 169/184 (91.85%), Query Frame = 1


Query: 1   MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL 60
           MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL
Sbjct: 1   MARLATYFYSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMEL 60

Query: 61  RNICNHPYLSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPK 120
           RNICNHPYLSQLHAEE               VDNLIPKHYLPPIVRLCGKLEMLDRILPK
Sbjct: 61  RNICNHPYLSQLHAEE---------------VDNLIPKHYLPPIVRLCGKLEMLDRILPK 120

Query: 121 LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI 180
           LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI
Sbjct: 121 LKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFI 169

Query: 181 FLLR 185
           FLLR
Sbjct: 181 FLLR 169

[Close]

BLAST of Csa6G305300 vs. NCBI nr
Match: gi|659076628|ref|XP_008438783.1| (PREDICTED: chromatin structure-remodeling complex protein SYD isoform X2 [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 4.1e-82
Identity = 158/175 (90.29%), Postives = 159/175 (90.86%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY
Sbjct: 1183 HKVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 1242

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLHAEE               VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV
Sbjct: 1243 LSQLHAEE---------------VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 1302

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL
Sbjct: 1303 LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 1342

[Close]

BLAST of Csa6G305300 vs. NCBI nr
Match: gi|700201929|gb|KGN57062.1| (hypothetical protein Csa_3G151390 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 4.1e-82
Identity = 158/175 (90.29%), Postives = 159/175 (90.86%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY
Sbjct: 1258 HKVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 1317

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLHAEE               VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV
Sbjct: 1318 LSQLHAEE---------------VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 1377

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL
Sbjct: 1378 LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 1417

[Close]

BLAST of Csa6G305300 vs. NCBI nr
Match: gi|778678718|ref|XP_011651020.1| (PREDICTED: chromatin structure-remodeling complex protein SYD isoform X1 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 4.1e-82
Identity = 158/175 (90.29%), Postives = 159/175 (90.86%), Query Frame = 1


Query: 9    YSVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 68
            + VENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY
Sbjct: 1183 HKVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 1242

Query: 69   LSQLHAEEACLSFLFIMQFIYGLVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 128
            LSQLHAEE               VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV
Sbjct: 1243 LSQLHAEE---------------VDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRV 1302

Query: 129  LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 184
            LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL
Sbjct: 1303 LFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLL 1342

The following BLAST results are available for this feature:

BLAST of Csa6G305300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYD_ARATH	6.6e-72	77.14	Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana GN=SY...	[more]
SMCA4_RAT	2.7e-33	44.51	Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1	[more]
SMCA4_MOUSE	2.7e-33	44.51	Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1	[more]
SMCA4_HUMAN	2.7e-33	44.51	Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2	[more]
SMCA4_BOVIN	2.7e-33	44.51	Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1	[more]

BLAST of Csa6G305300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG41_CUCSA	1.4e-100	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G305300 PE=4 SV=1	[more]
A0A0A0L8X3_CUCSA	2.9e-82	90.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G151390 PE=4 SV=1	[more]
F6HDI4_VITVI	8.1e-77	83.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02020 PE=4 SV=...	[more]
U5G6B8_POPTR	2.0e-75	81.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20050g PE=4 SV=1	[more]
A0A151ST92_CAJCA	2.0e-75	82.29	Chromatin structure-remodeling complex subunit snf21 OS=Cajanus cajan GN=KK1_004...	[more]

BLAST of Csa6G305300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28290.1	3.7e-73	77.14	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT5G19310.1	3.2e-32	44.07	Homeotic gene regulator	[more]
AT3G06010.1	5.4e-32	44.63	Homeotic gene regulator	[more]
AT2G46020.2	1.3e-25	38.86	transcription regulatory protein SNF2, putative	[more]
AT5G18620.2	1.6e-23	38.86	chromatin remodeling factor17	[more]

BLAST of Csa6G305300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192163\|gb\|KGN47367.1\|	2.0e-100	100.00	hypothetical protein Csa_6G305300 [Cucumis sativus]	[more]
gi\|778722207\|ref\|XP_011658432.1\|	2.2e-88	91.85	PREDICTED: chromatin structure-remodeling complex protein SYD-like [Cucumis sati...	[more]
gi\|659076628\|ref\|XP_008438783.1\|	4.1e-82	90.29	PREDICTED: chromatin structure-remodeling complex protein SYD isoform X2 [Cucumi...	[more]
gi\|700201929\|gb\|KGN57062.1\|	4.1e-82	90.29	hypothetical protein Csa_3G151390 [Cucumis sativus]	[more]
gi\|778678718\|ref\|XP_011651020.1\|	4.1e-82	90.29	PREDICTED: chromatin structure-remodeling complex protein SYD isoform X1 [Cucumi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0042393	histone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G305300.1	Csa6G305300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 110..179 score: 9.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 108..177 score: 2.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..183 score: 2.63
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 11..183 score: 8.2
None	No IPR available	PANTHER	PTHR10799:SF783	SUBFAMILY NOT NAMED	coord: 11..183 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G305300	Cla009325	Watermelon (97103) v1	cuwmB550
Csa6G305300	MELO3C021353	Melon (DHL92) v3.5.1	cumeB440
Csa6G305300	ClCG06G005340	Watermelon (Charleston Gray)	cuwcgB486
Csa6G305300	Lsi09G014060	Bottle gourd (USVL1VR-Ls)	culsiB401
Csa6G305300	MELO3C021353.2	Melon (DHL92) v3.6.1	cumedB420
Csa6G305300	Cla97C06G114840	Watermelon (97103) v2	cuwmbB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G305300	Cucurbita maxima (Rimu)	cmacuB230
Csa6G305300	Bottle gourd (USVL1VR-Ls)	culsiB440
Csa6G305300	Cucumber (Gy14) v2	cgybcuB281