Csa6G304300 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G304300
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 14594868 .. 14595287 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAAGTGGACGGAGAGGTGGACGGCCGGCGACAGAGGGTTTCGGTGTGTGTGGGGGGTTTCGAATGAGTTTTTTCGAATGGAGGTGAGCGTTTCGAATGGATGGGTCGGGGTTTCCAAAAGATTGACTTCGTGCGTGGGGGTTCTTTAGGGTGGGTAGACGTCATCGACGACAATGGAAGCAAGCGGTCGGAGTTGCGGACGGCCGGCAACAAAGGGGTTTCGGTGTGTGGGGGGGTTTCGAATGAAGGTGAGTGTTTCGAACGGATGGGCCGGGGTTTCCAAAAGATTGACTTCGCGCGTGGGGTTCTTTGGGGTGGGTAGACGTCGTCGACGACAATGGAAGCAAGTGGACGGAGAGGTGGACGGCCGGCGACAGAGGGTTTCGGTGTGTGAGGGGGTTTCAATTGGGGTGA

mRNA sequence

ATGGAAGCAAGTGGACGGAGAGGTGGACGGCCGGCGACAGAGGGTTTCGGGTGGGTAGACGTCATCGACGACAATGGAAGCAAGCGGTCGGAGTTGCGGACGGCCGGCAACAAAGGGGTTTCGGTGTGTGGGGGGGTTTCGAATGAAGACGTCGTCGACGACAATGGAAGCAAGTGGACGGAGAGGTGGACGGCCGGCGACAGAGGGTTTCGGTGTGTGAGGGGGTTTCAATTGGGGTGA

Coding sequence (CDS)

ATGGAAGCAAGTGGACGGAGAGGTGGACGGCCGGCGACAGAGGGTTTCGGGTGGGTAGACGTCATCGACGACAATGGAAGCAAGCGGTCGGAGTTGCGGACGGCCGGCAACAAAGGGGTTTCGGTGTGTGGGGGGGTTTCGAATGAAGACGTCGTCGACGACAATGGAAGCAAGTGGACGGAGAGGTGGACGGCCGGCGACAGAGGGTTTCGGTGTGTGAGGGGGTTTCAATTGGGGTGA

Protein sequence

MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWTERWTAGDRGFRCVRGFQLG*
Homology
[Close]
BLAST of Csa6G304300 vs. TrEMBL
Match: A0A0A0KHW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G304300 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-40
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWT 60
          MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWT
Sbjct: 1  MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWT 60

Query: 61 ERWTAGDRGFRCVRGFQLG 80
          ERWTAGDRGFRCVRGFQLG
Sbjct: 61 ERWTAGDRGFRCVRGFQLG 79

[Close]
BLAST of Csa6G304300 vs. NCBI nr
Match: gi|700192162|gb|KGN47366.1| (hypothetical protein Csa_6G304300 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWT 60
          MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWT
Sbjct: 1  MEASGRRGGRPATEGFGWVDVIDDNGSKRSELRTAGNKGVSVCGGVSNEDVVDDNGSKWT 60

Query: 61 ERWTAGDRGFRCVRGFQLG 80
          ERWTAGDRGFRCVRGFQLG
Sbjct: 61 ERWTAGDRGFRCVRGFQLG 79

The following BLAST results are available for this feature:
BLAST of Csa6G304300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHW4_CUCSA7.6e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G304300 PE=4 SV=1[more]
BLAST of Csa6G304300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192162|gb|KGN47366.1|1.1e-39100.00hypothetical protein Csa_6G304300 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G304300.1Csa6G304300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G304300CSPI06G16850Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G304300Cucurbita maxima (Rimu)cmacuB230
Csa6G304300Bottle gourd (USVL1VR-Ls)culsiB440
Csa6G304300Cucumber (Gy14) v2cgybcuB281