Csa6G295960 (gene) Cucumber (Chinese Long) v2

NameCsa6G295960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP synthase subunit alpha; contains IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)
LocationChr6 : 14177992 .. 14178463 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGTTGCACTCATGGGTCCGCTTGACCAAAAAAGGAGCCGTCCACGCCCGCCCACCACTGACATTGAAACCCAATATTGCTTTCCCATCACACCCACCTTAGTATTCTAGTTTATCTTATATTATTCGAAATATTCTCTCCAACGTACGTCCATATTAGAAAAATCAACGGGGCTCATACTCTATAAGATTGAAGGACTACTTCTCTCATTATCAATTGGTTTTGAGATAAAACCTCATACTATCAAATTTAAAAATAAGAACTACATTATAACTTTTTTTTCTAAACTATGAAATAAGTCTGCAGCAGTTCAAAACTTGAATTGGCACAATATCGCGAAGTCGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAAGCATTACTCAATAGAGATGCAAGGCTTACAGAAGTCTCGAAACAAGCACAATATGCACCACTGAACATTGAAAAATAA

mRNA sequence

ATGTTGATGTTGCACTCATGGGTCCGCTTGACCAAAAAAGGAGCCGTCCACGCCCGCCCACCACTGACATTGAAACCCAATATTGCTTTCCCATCACACCCACCTTACAGTTCAAAACTTGAATTGGCACAATATCGCGAAGTCGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAAGCATTACTCAATAGAGATGCAAGGCTTACAGAAGTCTCGAAACAAGCACAATATGCACCACTGAACATTGAAAAATAA

Coding sequence (CDS)

ATGTTGATGTTGCACTCATGGGTCCGCTTGACCAAAAAAGGAGCCGTCCACGCCCGCCCACCACTGACATTGAAACCCAATATTGCTTTCCCATCACACCCACCTTACAGTTCAAAACTTGAATTGGCACAATATCGCGAAGTCGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAAGCATTACTCAATAGAGATGCAAGGCTTACAGAAGTCTCGAAACAAGCACAATATGCACCACTGAACATTGAAAAATAA

Protein sequence

MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK*
BLAST of Csa6G295960 vs. Swiss-Prot
Match: ATPAM_RAPSA (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-18
Identity = 48/52 (92.31%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QYAPL IEK
Sbjct: 392 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEK 443

BLAST of Csa6G295960 vs. Swiss-Prot
Match: ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-18
Identity = 48/52 (92.31%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QYAPL IEK
Sbjct: 392 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEK 443

BLAST of Csa6G295960 vs. Swiss-Prot
Match: ATPAM_BRACM (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris GN=ATPA PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-18
Identity = 48/52 (92.31%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QYAPL IEK
Sbjct: 392 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEK 443

BLAST of Csa6G295960 vs. Swiss-Prot
Match: ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 47/52 (90.38%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           S KLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QYAPL IEK
Sbjct: 392 SPKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEK 443

BLAST of Csa6G295960 vs. Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 47/52 (90.38%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QY PL IEK
Sbjct: 392 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEK 443

BLAST of Csa6G295960 vs. TrEMBL
Match: A0A0A0KHR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G295960 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1

Query: 1  MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDA 60
          MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDA
Sbjct: 1  MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDA 60

Query: 61 ATQALLNRDARLTEVSKQAQYAPLNIEK 89
          ATQALLNRDARLTEVSKQAQYAPLNIEK
Sbjct: 61 ATQALLNRDARLTEVSKQAQYAPLNIEK 88

BLAST of Csa6G295960 vs. TrEMBL
Match: G3EIZ8_CUCSA (ATP synthase subunit alpha OS=Cucumis sativus GN=atp1 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIEK
Sbjct: 390 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIEK 441

BLAST of Csa6G295960 vs. TrEMBL
Match: G3EU05_CUCME (ATP synthase subunit alpha OS=Cucumis melo subsp. melo GN=atp1 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIEK
Sbjct: 394 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIEK 445

BLAST of Csa6G295960 vs. TrEMBL
Match: A0A0A0KMP0_CUCSA (ATP synthase subunit alpha OS=Cucumis sativus GN=Csa_5G321480 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIE 88
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIE
Sbjct: 243 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIE 293

BLAST of Csa6G295960 vs. TrEMBL
Match: A1XIT3_LEEGU (ATP synthase subunit alpha (Fragment) OS=Leea guineensis GN=atp1 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQ QYAPL IEK
Sbjct: 334 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQPQYAPLPIEK 385

BLAST of Csa6G295960 vs. TAIR10
Match: AT2G07698.1 (AT2G07698.1 ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-19
Identity = 48/52 (92.31%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QYAPL IEK
Sbjct: 662 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEK 713

BLAST of Csa6G295960 vs. TAIR10
Match: ATMG01190.1 (ATMG01190.1 ATP synthase subunit 1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-19
Identity = 48/52 (92.31%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEV KQ QYAPL IEK
Sbjct: 392 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEK 443

BLAST of Csa6G295960 vs. TAIR10
Match: ATCG00120.1 (ATCG00120.1 ATP synthase subunit alpha)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query: 39  KLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           KLELAQ+ E+ AF+QF SDLD ATQ  L R  RL E+ KQ+Q APL +E+
Sbjct: 384 KLELAQFAELEAFSQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEE 433

BLAST of Csa6G295960 vs. NCBI nr
Match: gi|700192117|gb|KGN47321.1| (hypothetical protein Csa_6G295960 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.9e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1

Query: 1  MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDA 60
          MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDA
Sbjct: 1  MLMLHSWVRLTKKGAVHARPPLTLKPNIAFPSHPPYSSKLELAQYREVAAFAQFGSDLDA 60

Query: 61 ATQALLNRDARLTEVSKQAQYAPLNIEK 89
          ATQALLNRDARLTEVSKQAQYAPLNIEK
Sbjct: 61 ATQALLNRDARLTEVSKQAQYAPLNIEK 88

BLAST of Csa6G295960 vs. NCBI nr
Match: gi|345034443|gb|AEN56129.1| (ATPase subunit 1 [Cucumis melo subsp. melo])

HSP 1 Score: 98.2 bits (243), Expect = 7.6e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIEK
Sbjct: 394 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIEK 445

BLAST of Csa6G295960 vs. NCBI nr
Match: gi|346683384|ref|YP_004849346.1| (ATPase subunit 1 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 7.6e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIEK 89
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIEK
Sbjct: 390 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIEK 441

BLAST of Csa6G295960 vs. NCBI nr
Match: gi|778708462|ref|XP_011656203.1| (PREDICTED: LOW QUALITY PROTEIN: ATP synthase subunit alpha, mitochondrial [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-17
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIE 88
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIE
Sbjct: 361 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIE 411

BLAST of Csa6G295960 vs. NCBI nr
Match: gi|700195733|gb|KGN50910.1| (hypothetical protein Csa_5G321480 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-17
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1

Query: 37  SSKLELAQYREVAAFAQFGSDLDAATQALLNRDARLTEVSKQAQYAPLNIE 88
           SSKLELAQYREVAAFAQFGSDLDAATQALLNR ARLTEVSKQAQYAPLNIE
Sbjct: 243 SSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIE 293

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATPAM_RAPSA5.8e-1892.31ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1[more]
ATPAM_BRANA5.8e-1892.31ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1[more]
ATPAM_BRACM5.8e-1892.31ATP synthase subunit alpha, mitochondrial OS=Brassica campestris GN=ATPA PE=3 SV... [more]
ATPAM_BETVU2.2e-1790.38ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1[more]
ATPAM_MAIZE2.2e-1790.38ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KHR7_CUCSA6.9e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G295960 PE=4 SV=1[more]
G3EIZ8_CUCSA5.3e-1898.08ATP synthase subunit alpha OS=Cucumis sativus GN=atp1 PE=3 SV=1[more]
G3EU05_CUCME5.3e-1898.08ATP synthase subunit alpha OS=Cucumis melo subsp. melo GN=atp1 PE=3 SV=1[more]
A0A0A0KMP0_CUCSA2.0e-1798.04ATP synthase subunit alpha OS=Cucumis sativus GN=Csa_5G321480 PE=4 SV=1[more]
A1XIT3_LEEGU1.7e-1694.23ATP synthase subunit alpha (Fragment) OS=Leea guineensis GN=atp1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G07698.13.3e-1992.31 ATPase, F1 complex, alpha subunit protein[more]
ATMG01190.13.3e-1992.31ATMG01190.1 ATP synthase subunit 1[more]
ATCG00120.12.4e-0960.00ATCG00120.1 ATP synthase subunit alpha[more]
Match NameE-valueIdentityDescription
gi|700192117|gb|KGN47321.1|9.9e-42100.00hypothetical protein Csa_6G295960 [Cucumis sativus][more]
gi|345034443|gb|AEN56129.1|7.6e-1898.08ATPase subunit 1 [Cucumis melo subsp. melo][more]
gi|346683384|ref|YP_004849346.1|7.6e-1898.08ATPase subunit 1 [Cucumis sativus][more]
gi|778708462|ref|XP_011656203.1|2.9e-1798.04PREDICTED: LOW QUALITY PROTEIN: ATP synthase subunit alpha, mitochondrial [Cucum... [more]
gi|700195733|gb|KGN50910.1|2.9e-1798.04hypothetical protein Csa_5G321480 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000793ATP_synth_asu_C
IPR005294ATP_synth_F1_asu
Vocabulary: Molecular Function
TermDefinition
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism
Vocabulary: Cellular Component
TermDefinition
GO:0033178proton-transporting two-sector ATPase complex, catalytic domain
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Biological Process
TermDefinition
GO:0015991ATP hydrolysis coupled proton transport
GO:0015986ATP synthesis coupled proton transport
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G295960.1Csa6G295960.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000793ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminalPFAMPF00306ATP-synt_ab_Ccoord: 39..87
score: 1.0
IPR000793ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminalunknownSSF47917C-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 39..87
score: 6.28
IPR005294ATPase, F1 complex, alpha subunitPANTHERPTHR15184:SF3ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 39..88
score: 6.4
NoneNo IPR availableGENE3DG3DSA:1.20.150.20coord: 37..88
score: 3.8
NoneNo IPR availablePANTHERPTHR15184ATP SYNTHASEcoord: 39..88
score: 6.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G295960CsGy6G015950Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None