Csa6G211860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G211860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 12886355 .. 12887043 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCCAATATGCACATCATGCTTAGATGCTTACATGATGTAAGATTTCCTTTTAATATATATACGTCATTGATGGTTGCGGTCTCCTTTTAATTGTAATGTCATTTCATTGTGTAGGTACCTTCACACAATTATGGTACAAGGACAAAGTTTAAACTTGTTCAAGTTCATGGATGTCGGATCTGAAAGTTACTCGAGTTATAAACAATCACGTGCGCAGTTGTTGAATGCTCGACTTCTCGGAGCCGAGTATGACCAAGTAATATTGTTTCCATACAACTCTGGGTAAGTGCATTATAATGACATTTTCATTAACATTCACGATTTGAATTCACTATTAAAATATTAATTTATAATGGTGGAAATGTGTTCTTAGCAATCACTGGACATTGGTCGTTGTTAATCCTACAAAGGGTGCTGCATATTGGATTGACCCGTTGAAGAATCGGATTGACGGAGACATGAGTGAAGTGCTTCAAATGTAGGTCATATTATTGTCGTTAATGTCTTATTATGTGTGCAACTATTTTAATTATGTAACAATCTTATATTATGTGGTAGGTCATTCGATATATCAAAGAAGAAAAAACCGAGTTGAAAGGTTGTTAAGGTATGTGGCATTGACCAATAGGATAGTCGTAAATAAGTTATTAATCTAAACGTTTCACACGTATTTTTTTTATTCTA

mRNA sequence

ATGCAGCCAATATGCACATCATGCTTAGATGCTTACATGATGTACCTTCACACAATTATGGTACAAGGACAAAGTTTAAACTTGTTCAAGTTCATGGATGTCGGATCTGAAAGTTACTCGAGTTATAAACAATCACGTGCGCAGTTGTTGAATGCTCGACTTCTCGGAGCCGAGTATGACCAAGTAATATTGTTTCCATACAACTCTGGCAATCACTGGACATTGGTCGTTGTTAATCCTACAAAGGGTGCTGCATATTGGATTGACCCGTTGAAGAATCGGATTGACGGAGACATGAGTGAAGTGCTTCAAATGTCATTCGATATATCAAAGAAGAAAAAACCGAGTTGA

Coding sequence (CDS)

ATGCAGCCAATATGCACATCATGCTTAGATGCTTACATGATGTACCTTCACACAATTATGGTACAAGGACAAAGTTTAAACTTGTTCAAGTTCATGGATGTCGGATCTGAAAGTTACTCGAGTTATAAACAATCACGTGCGCAGTTGTTGAATGCTCGACTTCTCGGAGCCGAGTATGACCAAGTAATATTGTTTCCATACAACTCTGGCAATCACTGGACATTGGTCGTTGTTAATCCTACAAAGGGTGCTGCATATTGGATTGACCCGTTGAAGAATCGGATTGACGGAGACATGAGTGAAGTGCTTCAAATGTCATTCGATATATCAAAGAAGAAAAAACCGAGTTGA

Protein sequence

MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYDQVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS*

Homology

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BLAST of Csa6G211860 vs. TrEMBL
Match: A0A0A0KEE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211860 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60
           MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD
Sbjct: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60

Query: 61  QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS 117
           QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS
Sbjct: 61  QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS 116

[Close]

BLAST of Csa6G211860 vs. TrEMBL
Match: A0A0A0LWT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G319810 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-25
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 15  YLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYDQVILFPYNSGNHWT 74
           YLHTIMVQG+S +LFKFMD GS SY SYKQS AQLLNARLLGAEYDQV+LFPYN GNHWT
Sbjct: 131 YLHTIMVQGRSSSLFKFMDAGSVSYLSYKQSCAQLLNARLLGAEYDQVVLFPYNYGNHWT 190

Query: 75  LVVVNPTK 83
           LVVVNPT+
Sbjct: 191 LVVVNPTR 198

[Close]

BLAST of Csa6G211860 vs. TrEMBL
Match: M5VTB9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017620mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.2e-10
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQS-RAQLLNARLLGAEY 60
           M  I ++ +  YM YL   +     +NL   +D+G  S  S   S R++ L+ RL  A  
Sbjct: 234 MVEIGSTMIALYMRYLFDYLKMANMVNLVGLVDLGQVSSQSGTLSHRSKYLSDRLKNANR 293

Query: 61  DQVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNR-IDGDMSEVLQMS 107
           DQ  L PYN G HW L++V P K   Y++D L NR +D DM  ++ +S
Sbjct: 294 DQFYLVPYNPGGHWVLIIVRPAKEIVYYMDSLPNRSVDEDMRNIVNIS 341

[Close]

BLAST of Csa6G211860 vs. TrEMBL
Match: M5W4V6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015484mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-09
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYK-QSRAQLLNARLLGAEY 60
           M+ I  + L  YM YLH ++ Q    ++  F+D  + S +S     R++L+ ARL   E 
Sbjct: 477 MEEIGATVLAVYMRYLHDVLKQANMCSMVGFIDPATVSANSGTITERSRLVAARLQKTEG 536

Query: 61  DQVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNR 95
           +Q+ + PYN G HW LV+V   K   Y++DPL  R
Sbjct: 537 EQIFMMPYNPGRHWILVIVRAKKETVYFLDPLPAR 571

[Close]

BLAST of Csa6G211860 vs. TrEMBL
Match: M5XRB2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019926mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 33/97 (34.02%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYK-QSRAQLLNARLLGAEY 60
           M+ I  + +  YM YLH ++ Q    ++  F+D  + S +S     R++L+ ARL   + 
Sbjct: 40  MEEIVATVIAVYMRYLHDVLKQANMCSMVGFIDPATVSANSGTIADRSRLVAARLQRTDG 99

Query: 61  DQVILFPYNSGNHWTLVVVNPTKGAAYWIDPLK-NRI 96
           +Q+ + PYN G HW L++V P +   Y++DPL  NR+
Sbjct: 100 EQIFMMPYNPGRHWILLIVRPKRETVYFLDPLPGNRV 136

[Close]

BLAST of Csa6G211860 vs. NCBI nr
Match: gi|700192010|gb|KGN47214.1| (hypothetical protein Csa_6G211860 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60
           MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD
Sbjct: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60

Query: 61  QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS 117
           QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS
Sbjct: 61  QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKNRIDGDMSEVLQMSFDISKKKKPS 116

[Close]

BLAST of Csa6G211860 vs. NCBI nr
Match: gi|700210216|gb|KGN65312.1| (hypothetical protein Csa_1G319810 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 15  YLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYDQVILFPYNSGNHWT 74
           YLHTIMVQG+S +LFKFMD GS SY SYKQS AQLLNARLLGAEYDQV+LFPYN GNHWT
Sbjct: 131 YLHTIMVQGRSSSLFKFMDAGSVSYLSYKQSCAQLLNARLLGAEYDQVVLFPYNYGNHWT 190

Query: 75  LVVVNPTK 83
           LVVVNPT+
Sbjct: 191 LVVVNPTR 198

[Close]

BLAST of Csa6G211860 vs. NCBI nr
Match: gi|659105267|ref|XP_008453054.1| (PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 8.8e-22
Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60
           MQPI T C+DA+M +L+ +M +  +L  +KF D GS S    K++RAQ+LNARLLG ++ 
Sbjct: 76  MQPISTQCIDAFMFHLYKVMEENGTLGSYKFADAGSVSVGISKENRAQILNARLLGTDHR 135

Query: 61  QVILFPYNSGNHWTLVVVNPTKGAAYWIDPLKN 94
           Q+++FPYNSGNHW L+ ++ ++G AY +DPL+N
Sbjct: 136 QILMFPYNSGNHWCLIAIDFSRGTAYGMDPLRN 168

[Close]

BLAST of Csa6G211860 vs. NCBI nr
Match: gi|659069187|ref|XP_008448556.1| (PREDICTED: uncharacterized protein LOC103490696 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-20
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60
           M+PI  +CL AY+MYL+T M   ++LNL+KF+DVGS S  S K+ RAQLL  RLLG +YD
Sbjct: 67  MRPIAIACLGAYIMYLYTRMESLRTLNLYKFVDVGSISCGSSKEERAQLLTTRLLGTDYD 126

Query: 61  QVILFPYNSGNHWTLVVVN 80
           Q++L PYN GNHWTLVV+N
Sbjct: 127 QLLLIPYNFGNHWTLVVIN 145

[Close]

BLAST of Csa6G211860 vs. NCBI nr
Match: gi|764595375|ref|XP_004300546.2| (PREDICTED: uncharacterized protein LOC101303909 [Fragaria vesca subsp. vesca])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 1   MQPICTSCLDAYMMYLHTIMVQGQSLNLFKFMDVGSESYSSYKQSRAQLLNARLLGAEYD 60
           M+PI  +C++ YM +L   + +  +  +F+F D  S S  +  + +AQ+L  RL      
Sbjct: 854 MEPISATCINVYMRHLSDELKKSNTDGIFRFCDASSISVGT-PEEKAQVLATRLQQLSTR 913

Query: 61  QVILFPYNSGNHWTLVVVNPTKGAAYWIDPL 92
           Q++L PYNSG+HWTL ++N  K   Y++DPL
Sbjct: 914 QILLVPYNSGSHWTLTIINEEKNICYYMDPL 943

The following BLAST results are available for this feature:

BLAST of Csa6G211860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEE8_CUCSA	1.9e-60	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211860 PE=4 SV=1	[more]
A0A0A0LWT3_CUCSA	7.7e-25	85.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G319810 PE=4 SV=1	[more]
M5VTB9_PRUPE	9.2e-10	37.04	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017620mg PE=4 S...	[more]
M5W4V6_PRUPE	7.8e-09	36.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015484mg PE=4 SV=1	[more]
M5XRB2_PRUPE	1.3e-08	34.02	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019926mg PE=4 SV=1	[more]

BLAST of Csa6G211860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192010\|gb\|KGN47214.1\|	2.8e-60	100.00	hypothetical protein Csa_6G211860 [Cucumis sativus]	[more]
gi\|700210216\|gb\|KGN65312.1\|	1.1e-24	85.29	hypothetical protein Csa_1G319810 [Cucumis sativus]	[more]
gi\|659105267\|ref\|XP_008453054.1\|	8.8e-22	50.54	PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo]	[more]
gi\|659069187\|ref\|XP_008448556.1\|	6.3e-20	62.03	PREDICTED: uncharacterized protein LOC103490696 [Cucumis melo]	[more]
gi\|764595375\|ref\|XP_004300546.2\|	1.2e-10	37.36	PREDICTED: uncharacterized protein LOC101303909 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G211860.1	Csa6G211860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.310.130		coord: 42..105 score: 1.
None	No IPR available	unknown	SSF54001	Cysteine proteinases	coord: 6..115 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G211860	Wax gourd	cuwgoB611
Csa6G211860	Cucurbita maxima (Rimu)	cmacuB381
Csa6G211860	Cucurbita maxima (Rimu)	cmacuB558
Csa6G211860	Cucurbita maxima (Rimu)	cmacuB907
Csa6G211860	Cucurbita moschata (Rifu)	cmocuB549
Csa6G211860	Melon (DHL92) v3.5.1	cumeB419
Csa6G211860	Watermelon (Charleston Gray)	cuwcgB446
Csa6G211860	Watermelon (97103) v1	cuwmB520
Csa6G211860	Cucurbita pepo (Zucchini)	cpecuB153
Csa6G211860	Cucurbita pepo (Zucchini)	cpecuB295
Csa6G211860	Bottle gourd (USVL1VR-Ls)	culsiB419
Csa6G211860	Cucumber (Gy14) v2	cgybcuB287
Csa6G211860	Melon (DHL92) v3.6.1	cumedB434
Csa6G211860	Silver-seed gourd	carcuB0080
Csa6G211860	Silver-seed gourd	carcuB0374
Csa6G211860	Watermelon (97103) v2	cuwmbB436