Csa6G211850 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G211850
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 12885433 .. 12886307 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAAAATCTAAAGAAGGTAATGAGGAGAGGACAGTGTATGAGCAACGTGATCAAATGGCCAATCGAATTATCGAGCTAGAAGCGAAGTTGCATAGAATGAAAAAAGATGAGTGTGCGAAAGGAGATGAAGAAGAACAAGACCCTAGGATGTGTTCGAAAGGAACACCATCAATTGAAGGGGTTTCAGATGATGAGACTGAAGACGTAGCCTCTGATTCAGTACCAGATAAAGCGGCTGACGTTGTGACAGAAGTGAACAAAGAAGAAAATGTGGGGGACACAAGATCAAGTGACTTGAAGGTTAGTTTAAAGTATACTTTACTAATTAAGGCACACTGCTCCACAACAATTCTATATACGTGTTTAATCTTGTAAGAAGTTAGACATAACCCTGAAAACGTATTGACTAACTTTACGTGCACATATTTAACATATAATTCTACGTAGGTTGGAACTCTGTGTATGCTTGCGTTTGAAACTGAAGATACTATCATTGCACATGGGACAATATTTGATGCTGAAGGTGACGGTGAGAACATCAAGGTATCAGTGGATGTTGTCCTCGATGGCAAAGGTGTGATTCCGAAACCGACAAAGGAAGGAGTCACCAAACTGACGCATGAAATCGGATCACATTTAATGTGGCCACGACATCTTGTTCTTACTAGGAATGATAAGGTAATTGTCTGTCTTACAGTAGTTGAACTTTTTGTGATAGAAGGAAACTGTGGGCTTCAATACGGATCCGTCCACATTCTCTATGGCAGCATATCTACGTGCTCTAGTGGCACTCCGGTGTTTGGTTAGACTCGTTGAACATATGGGGTCATCGATTCAACTAAACACGCCTTTAGAGCTATTCGGTGTGA

mRNA sequence

ATGGAATCAAAATCTAAAGAAGGTAATGAGGAGAGGACAGTGTATGAGCAACGTGATCAAATGGCCAATCGAATTATCGAGCTAGAAGCGAAGTTGCATAGAATGAAAAAAGATGAGTGTGCGAAAGGAGATGAAGAAGAACAAGACCCTAGGATGTGTTCGAAAGGAACACCATCAATTGAAGGGGTTTCAGATGATGAGACTGAAGACGTAGCCTCTGATTCAGTACCAGATAAAGCGGCTGACGTTGTGACAGAAGTGAACAAAGAAGAAAATGTGGGGGACACAAGATCAAGTGACTTGAAGGTTGGAACTCTGTGTATGCTTGCGTTTGAAACTGAAGATACTATCATTGCACATGGGACAATATTTGATGCTGAAGGTGACGGTGAGAACATCAAGGTATCAGTGGATGTTGTCCTCGATGGCAAAGGTGTGATTCCGAAACCGACAAAGGAAGGAGTCACCAAACTGACGCATGAAATCGGATCACATTTAATGTGGCCACGACATCTTGTTCTTACTAGGAATGATAAGAGCTATTCGGTGTGA

Coding sequence (CDS)

ATGGAATCAAAATCTAAAGAAGGTAATGAGGAGAGGACAGTGTATGAGCAACGTGATCAAATGGCCAATCGAATTATCGAGCTAGAAGCGAAGTTGCATAGAATGAAAAAAGATGAGTGTGCGAAAGGAGATGAAGAAGAACAAGACCCTAGGATGTGTTCGAAAGGAACACCATCAATTGAAGGGGTTTCAGATGATGAGACTGAAGACGTAGCCTCTGATTCAGTACCAGATAAAGCGGCTGACGTTGTGACAGAAGTGAACAAAGAAGAAAATGTGGGGGACACAAGATCAAGTGACTTGAAGGTTGGAACTCTGTGTATGCTTGCGTTTGAAACTGAAGATACTATCATTGCACATGGGACAATATTTGATGCTGAAGGTGACGGTGAGAACATCAAGGTATCAGTGGATGTTGTCCTCGATGGCAAAGGTGTGATTCCGAAACCGACAAAGGAAGGAGTCACCAAACTGACGCATGAAATCGGATCACATTTAATGTGGCCACGACATCTTGTTCTTACTAGGAATGATAAGAGCTATTCGGTGTGA

Protein sequence

MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSIEGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKSYSV*

Homology

[Close]

BLAST of Csa6G211850 vs. TrEMBL
Match: A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.4e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 1   MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSI 60
           MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSI
Sbjct: 1   MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSI 60

Query: 61  EGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAH 120
           EGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAH
Sbjct: 61  EGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAH 120

Query: 121 GTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKS 180
           GTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKS
Sbjct: 121 GTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKS 180

Query: 181 YSV 184
           YSV
Sbjct: 181 YSV 183

[Close]

BLAST of Csa6G211850 vs. TrEMBL
Match: A0A0A0LCT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G362650 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-32
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1


Query: 7   EGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSIEGVSDD 66
           +GNEERTVYE+RDQMA RIIEL+A+LH MKKDECAKGDEEEQDP MCSKGTPSIE VSDD
Sbjct: 34  KGNEERTVYEERDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDD 93

Query: 67  ETEDVASDSVPDKAADVVT 86
           ETEDVASDSVPDKAADVVT
Sbjct: 94  ETEDVASDSVPDKAADVVT 112

[Close]

BLAST of Csa6G211850 vs. TrEMBL
Match: A0A0A0KMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDK 180
           DG+N+ + VDVV+DG   +P PT++GVT L  EI S L+WPRHLV+ +++K
Sbjct: 2   DGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEK 52

[Close]

BLAST of Csa6G211850 vs. NCBI nr
Match: gi|700192009|gb|KGN47213.1| (hypothetical protein Csa_6G211850 [Cucumis sativus])

HSP 1 Score: 368.6 bits (945), Expect = 6.3e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 1   MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSI 60
           MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSI
Sbjct: 1   MESKSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSI 60

Query: 61  EGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAH 120
           EGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAH
Sbjct: 61  EGVSDDETEDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAFETEDTIIAH 120

Query: 121 GTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKS 180
           GTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKS
Sbjct: 121 GTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKS 180

Query: 181 YSV 184
           YSV
Sbjct: 181 YSV 183

[Close]

BLAST of Csa6G211850 vs. NCBI nr
Match: gi|778714054|ref|XP_011657178.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 108 MLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLM 167
           MLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLM
Sbjct: 1   MLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLM 60

Query: 168 WPRHLVLTRNDKSYSV 184
           WPRHLVLTRNDK  +V
Sbjct: 61  WPRHLVLTRNDKKETV 76

[Close]

BLAST of Csa6G211850 vs. NCBI nr
Match: gi|778714056|ref|XP_011657179.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 108 MLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLM 167
           MLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLM
Sbjct: 1   MLAFETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLM 60

Query: 168 WPRHLVLTRNDK 180
           WPRHLVLTRNDK
Sbjct: 61  WPRHLVLTRNDK 72

[Close]

BLAST of Csa6G211850 vs. NCBI nr
Match: gi|700202748|gb|KGN57881.1| (hypothetical protein Csa_3G362650 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1


Query: 7   EGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSIEGVSDD 66
           +GNEERTVYE+RDQMA RIIEL+A+LH MKKDECAKGDEEEQDP MCSKGTPSIE VSDD
Sbjct: 34  KGNEERTVYEERDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDD 93

Query: 67  ETEDVASDSVPDKAADVVT 86
           ETEDVASDSVPDKAADVVT
Sbjct: 94  ETEDVASDSVPDKAADVVT 112

[Close]

BLAST of Csa6G211850 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 73/192 (38.02%), Postives = 109/192 (56.77%), Query Frame = 1


Query: 4   KSKEGNEERTVYEQRDQMANRIIELEAKLHRMKK-DECAKGDEEEQDP---RMCSKGTPS 63
           K ++ ++E    E+R +MA RI+ELEA+L + KK  E A  +E ++     +M SK   +
Sbjct: 41  KRRKVSKEEDYAEERARMAARILELEAELMKHKKVPEVATKEETDESKIKSQMASKSIDT 100

Query: 64  IEGVSDDET--------EDVASDSVPDKAADVVTEVNKEENVGDTRSSDLKVGTLCMLAF 123
            +  +D +         ED+  + +  +  D V E NK         + +K GT C LA 
Sbjct: 101 SDDANDHDAKEENRQVLEDLTIEDLTIEKQDKVGEENKYVCASTETLTKVKDGTSCRLAI 160

Query: 124 ETEDTIIAHGTIFDAEGDGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRH 183
            T D ++  GTIFD   DG+N+KVSVD+V DG   +P PT+EG T L+ E+GS L+WPRH
Sbjct: 161 GTRDNVVGAGTIFDYYMDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSEEVGSQLLWPRH 220

The following BLAST results are available for this feature:

BLAST of Csa6G211850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCE4_CUCSA	4.4e-99	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1	[more]
A0A0A0LCT7_CUCSA	7.8e-32	89.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G362650 PE=4 SV=1	[more]
A0A0A0KMP7_CUCSA	2.3e-07	52.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1	[more]

BLAST of Csa6G211850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192009\|gb\|KGN47213.1\|	6.3e-99	100.00	hypothetical protein Csa_6G211850 [Cucumis sativus]	[more]
gi\|778714054\|ref\|XP_011657178.1\|	2.1e-33	96.05	PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus]	[more]
gi\|778714056\|ref\|XP_011657179.1\|	4.6e-33	100.00	PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus]	[more]
gi\|700202748\|gb\|KGN57881.1\|	1.1e-31	89.87	hypothetical protein Csa_3G362650 [Cucumis sativus]	[more]
gi\|659134106\|ref\|XP_008467031.1\|	1.0e-24	38.02	PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU088524	cucumber EST collection version 3.0	transcribed_cluster
CU156051	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G211850.1	Csa6G211850.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU156051	CU156051	transcribed_cluster
CU088524	CU088524	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 18..38 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G211850	Cucurbita maxima (Rimu)	cmacuB381
Csa6G211850	Cucurbita maxima (Rimu)	cmacuB558
Csa6G211850	Cucurbita maxima (Rimu)	cmacuB907
Csa6G211850	Cucurbita moschata (Rifu)	cmocuB549
Csa6G211850	Melon (DHL92) v3.5.1	cumeB419
Csa6G211850	Watermelon (Charleston Gray)	cuwcgB446
Csa6G211850	Watermelon (97103) v1	cuwmB520
Csa6G211850	Cucurbita pepo (Zucchini)	cpecuB153
Csa6G211850	Cucurbita pepo (Zucchini)	cpecuB295
Csa6G211850	Bottle gourd (USVL1VR-Ls)	culsiB419
Csa6G211850	Cucumber (Gy14) v2	cgybcuB287
Csa6G211850	Melon (DHL92) v3.6.1	cumedB434
Csa6G211850	Silver-seed gourd	carcuB0080
Csa6G211850	Silver-seed gourd	carcuB0374
Csa6G211850	Watermelon (97103) v2	cuwmbB436
Csa6G211850	Wax gourd	cuwgoB611