Csa6G205850 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G205850
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 12818861 .. 12819241 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAAAAACTGAAACCTCTGCTCAAACAGAACTTCCAACACTTCAGAAGGTTTACTCAATTCGTCTGTTAGAAGAAGCCTGTAAGGAACGAAATATGATTGCACCAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAACTTAAAACTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCTATGTTCATATCATCCAAGTTTTCGAGGTAGAGGTAATCAAAACAATCACGTGATGGACACTTTTTTCATCGAAACTGGAATAATAACAGCAGGCCGCAATTGTCAGATATGTGGACATTTGGTCACACAGCTATTTGGTGTTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTTTACTTCTTGA

mRNA sequence

ATGACTCTAAAAACTGAAACCTCTGCTCAAACAGAACTTCCAACACTTCAGAAGGTTTACTCAATTCGTCTGTTAGAAGAAGCCTGTAAGGAACGAAATATGATTGCACCAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAACTTAAAACTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCTATGTTCATATCATCCAAGTTTTCGAGGTAGAGGTAATCAAAACAATCACGTGATGGACACTTTTTTCATCGAAACTGGAATAATAACAGCAGGCCGCAATTGTCAGATATGTGGACATTTGGTCACACAGCTATTTGGTGTTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTTTACTTCTTGA

Coding sequence (CDS)

ATGACTCTAAAAACTGAAACCTCTGCTCAAACAGAACTTCCAACACTTCAGAAGGTTTACTCAATTCGTCTGTTAGAAGAAGCCTGTAAGGAACGAAATATGATTGCACCAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAACTTAAAACTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCTATGTTCATATCATCCAAGTTTTCGAGGTAGAGGTAATCAAAACAATCACGTGATGGACACTTTTTTCATCGAAACTGGAATAATAACAGCAGGCCGCAATTGTCAGATATGTGGACATTTGGTCACACAGCTATTTGGTGTTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTTTACTTCTTGA

Protein sequence

MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFSSESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQNGNNFTS*

Homology

[Close]

BLAST of Csa6G205850 vs. TrEMBL
Match: A0A0A0KHG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G205850 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60
           MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS
Sbjct: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60

Query: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120
           SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN
Sbjct: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120

Query: 121 GNNFTS 127
           GNNFTS
Sbjct: 121 GNNFTS 126

[Close]

BLAST of Csa6G205850 vs. NCBI nr
Match: gi|700192007|gb|KGN47211.1| (hypothetical protein Csa_6G205850 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60
           MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS
Sbjct: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60

Query: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120
           SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN
Sbjct: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120

Query: 121 GNNFTS 127
           GNNFTS
Sbjct: 121 GNNFTS 126

The following BLAST results are available for this feature:

BLAST of Csa6G205850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHG0_CUCSA	2.2e-65	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G205850 PE=4 SV=1	[more]

BLAST of Csa6G205850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192007\|gb\|KGN47211.1\|	3.1e-65	100.00	hypothetical protein Csa_6G205850 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G205850.1	Csa6G205850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G205850	CsGy6G015370	Cucumber (Gy14) v2	cgybcuB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G205850	Watermelon (97103) v2	cuwmbB436
Csa6G205850	Wax gourd	cuwgoB611
Csa6G205850	Cucurbita maxima (Rimu)	cmacuB381
Csa6G205850	Cucurbita maxima (Rimu)	cmacuB558
Csa6G205850	Cucurbita maxima (Rimu)	cmacuB907
Csa6G205850	Cucurbita moschata (Rifu)	cmocuB549
Csa6G205850	Melon (DHL92) v3.5.1	cumeB419
Csa6G205850	Watermelon (Charleston Gray)	cuwcgB446
Csa6G205850	Watermelon (97103) v1	cuwmB520
Csa6G205850	Cucurbita pepo (Zucchini)	cpecuB153
Csa6G205850	Cucurbita pepo (Zucchini)	cpecuB295
Csa6G205850	Bottle gourd (USVL1VR-Ls)	culsiB419
Csa6G205850	Melon (DHL92) v3.6.1	cumedB434
Csa6G205850	Silver-seed gourd	carcuB0080
Csa6G205850	Silver-seed gourd	carcuB0374