Csa6G205840 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G205840
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 12816906 .. 12817220 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAAAACTCGCGGTAAAGGGCGATAACACCAAACCCAATCCACAAGAGATTTCTCCAAAAACCATGACAACCCACTTGCCAGTGGAGGGATCTATGGTAGAAATCAAAGTCAGCATTGCCAATATGCAAGTGCTGTGGGAAACTTTGGCGAAGCAAATTGAGTTTGCGGGTGTGGGACAGCCACCAAAACTACTAGAGAATAGAAAAGATGAAAGAACAGGAAATCAAATTCAAGTAGATCAAAGAATGAGGAACCAAGTTCAAGAAATGGAGCCAAGAAGATCAGGAGAGGGCGTTCTCATTCCATAG

mRNA sequence

ATGGCTGGAAAACTCGCGGTAAAGGGCGATAACACCAAACCCAATCCACAAGAGATTTCTCCAAAAACCATGACAACCCACTTGCCAGTGGAGGGATCTATGGTAGAAATCAAAGTCAGCATTGCCAATATGCAAGTGCTGTGGGAAACTTTGGCGAAGCAAATTGAGTTTGCGGGTGTGGGACAGCCACCAAAACTACTAGAGAATAGAAAAGATGAAAGAACAGGAAATCAAATTCAAGTAGATCAAAGAATGAGGAACCAAGTTCAAGAAATGGAGCCAAGAAGATCAGGAGAGGGCGTTCTCATTCCATAG

Coding sequence (CDS)

ATGGCTGGAAAACTCGCGGTAAAGGGCGATAACACCAAACCCAATCCACAAGAGATTTCTCCAAAAACCATGACAACCCACTTGCCAGTGGAGGGATCTATGGTAGAAATCAAAGTCAGCATTGCCAATATGCAAGTGCTGTGGGAAACTTTGGCGAAGCAAATTGAGTTTGCGGGTGTGGGACAGCCACCAAAACTACTAGAGAATAGAAAAGATGAAAGAACAGGAAATCAAATTCAAGTAGATCAAAGAATGAGGAACCAAGTTCAAGAAATGGAGCCAAGAAGATCAGGAGAGGGCGTTCTCATTCCATAG

Protein sequence

MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGVGQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP*
Homology
[Close]
BLAST of Csa6G205840 vs. TrEMBL
Match: A0A0A0KBX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G205840 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60
           MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV
Sbjct: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60

Query: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 105
           GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP
Sbjct: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 104

[Close]
BLAST of Csa6G205840 vs. NCBI nr
Match: gi|700192006|gb|KGN47210.1| (hypothetical protein Csa_6G205840 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60
           MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV
Sbjct: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60

Query: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 105
           GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP
Sbjct: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 104

The following BLAST results are available for this feature:
BLAST of Csa6G205840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBX3_CUCSA1.9e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G205840 PE=4 SV=1[more]
BLAST of Csa6G205840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192006|gb|KGN47210.1|2.8e-51100.00hypothetical protein Csa_6G205840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G205840.1Csa6G205840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G205840CSPI06G14980Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G205840Cucumber (Gy14) v2cgybcuB287
Csa6G205840Melon (DHL92) v3.6.1cumedB434
Csa6G205840Silver-seed gourdcarcuB0080
Csa6G205840Silver-seed gourdcarcuB0374
Csa6G205840Watermelon (97103) v2cuwmbB436
Csa6G205840Wax gourdcuwgoB611
Csa6G205840Cucurbita maxima (Rimu)cmacuB381
Csa6G205840Cucurbita maxima (Rimu)cmacuB558
Csa6G205840Cucurbita maxima (Rimu)cmacuB907
Csa6G205840Cucurbita moschata (Rifu)cmocuB549
Csa6G205840Melon (DHL92) v3.5.1cumeB419
Csa6G205840Watermelon (Charleston Gray)cuwcgB446
Csa6G205840Watermelon (97103) v1cuwmB520
Csa6G205840Cucurbita pepo (Zucchini)cpecuB153
Csa6G205840Cucurbita pepo (Zucchini)cpecuB295
Csa6G205840Bottle gourd (USVL1VR-Ls)culsiB419