Csa6G188150 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G188150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 12263135 .. 12263971 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAAAGAAAGGAGAGAAGACAGCAACACAAAAAAGGTTGATAGAATGGCTCAAAATCCTCCTGTTTTGATATTTATTGATACTTATTAACAAAGCTTTGTACAGGTTGGCGAAAGGAACTCTTACTATAATTATAGATTCAATGAGGAAGACATAAGCAGGGAAAGAAGCTCAACTATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCTCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAGGAAATTGGAGGATTGGAGTTCTTATTTATTCTTTGCCTTTTCTGATTGCATCTGTTTGGTGATTCCCTTCTGATGGTTCTTTGCTGAATTCTGGTTGATGTGTGGGAATTTTATCTTTGCTTGAATTACATTATATGATTATGAGCATTTGGGTTTGAATTTCTTCTACGCTATAATATATATATACATATAGGAAACTTTGTACATCTTGTAATGGTGGCTGTACTCAACTCTGCTTTGAACTTTTCTTTAACTCATTGCTTCGCAAGGAATTCAAGGGCACATTTAAGTTGATTTTAGTTTTGAGTGAATAAAAAGGAATGCCAAGGATATTTAAATTTATGCCC

mRNA sequence

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCTCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG

Coding sequence (CDS)

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCTCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG

Protein sequence

MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD*
Homology
[Close]
BLAST of Csa6G188150 vs. TrEMBL
Match: A0A0A0KFD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 104
           ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]
BLAST of Csa6G188150 vs. TrEMBL
Match: W9SIX5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025315 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 1 

Query: 4   SSKICFCIPRHKNGHKADGGS--EKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEE 63
           S  ICFC   HK+  + +G S  +K SKS+        D  EG +  SS ++ N      
Sbjct: 3   SKNICFCFRSHKSKEEKEGSSKSDKKSKSRGLNPTDPSDHAEGNYQGSSATTSNDGG--- 62

Query: 64  CAASATAVAAVAVTAVTMDAL-DDDGGSTHVHGGEGGSGAGG 103
                  VAA  VT  T+ AL + +GGSTH  GG+GGS  GG
Sbjct: 63  -------VAAAVVTTATITALHNSEGGSTHGGGGDGGSAHGG 94

[Close]
BLAST of Csa6G188150 vs. NCBI nr
Match: gi|700191918|gb|KGN47122.1| (hypothetical protein Csa_6G188150 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 5.5e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 104
           ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]
BLAST of Csa6G188150 vs. NCBI nr
Match: gi|703137786|ref|XP_010106555.1| (hypothetical protein L484_025315 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 1 

Query: 4   SSKICFCIPRHKNGHKADGGS--EKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEE 63
           S  ICFC   HK+  + +G S  +K SKS+        D  EG +  SS ++ N      
Sbjct: 3   SKNICFCFRSHKSKEEKEGSSKSDKKSKSRGLNPTDPSDHAEGNYQGSSATTSNDGG--- 62

Query: 64  CAASATAVAAVAVTAVTMDAL-DDDGGSTHVHGGEGGSGAGG 103
                  VAA  VT  T+ AL + +GGSTH  GG+GGS  GG
Sbjct: 63  -------VAAAVVTTATITALHNSEGGSTHGGGGDGGSAHGG 94

The following BLAST results are available for this feature:
BLAST of Csa6G188150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFD0_CUCSA3.9e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1[more]
W9SIX5_9ROSA3.8e-0738.24Uncharacterized protein OS=Morus notabilis GN=L484_025315 PE=4 SV=1[more]
BLAST of Csa6G188150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191918|gb|KGN47122.1|5.5e-52100.00hypothetical protein Csa_6G188150 [Cucumis sativus][more]
gi|703137786|ref|XP_010106555.1|5.4e-0738.24hypothetical protein L484_025315 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086176cucumber EST collection version 3.0transcribed_cluster
CU088081cucumber EST collection version 3.0transcribed_cluster
CU088315cucumber EST collection version 3.0transcribed_cluster
CU095769cucumber EST collection version 3.0transcribed_cluster
CU121816cucumber EST collection version 3.0transcribed_cluster
CU122921cucumber EST collection version 3.0transcribed_cluster
CU134215cucumber EST collection version 3.0transcribed_cluster
CU153468cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G188150.1Csa6G188150.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095769CU095769transcribed_cluster
CU122921CU122921transcribed_cluster
CU086176CU086176transcribed_cluster
CU134215CU134215transcribed_cluster
CU121816CU121816transcribed_cluster
CU088315CU088315transcribed_cluster
CU153468CU153468transcribed_cluster
CU088081CU088081transcribed_cluster