Csa6G185250 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G185250
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSelT-like protein
LocationChr6 : 11957597 .. 11959066 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTCTTTCGATATCTACGATTTCATCTCAGCTGATCCGCACTCCAAATTCTCTCGTTTATCATTACTCAAACACCACCCATTTCAATCAGAAAATTGTCGCCTGTTTAAATCATACGGCAGAATACAGTTTGAATAATGCGGAACTAGCGCTCTTATGACTCATTCGGAAATAGATCAGAGATTGAATAATCACACACAACGATACGCTTATCGTCAAATTCAACTCTCCGTGTTCTTACAGGTAATAATGCATTTCGTTTTGGTAAATATGCTCAATCGTTCGCTTCTGTTGAGTTTGATTCTTTGGTTCTAATTTGATTAATCCGTGTGAATTTGTTGGAGTTGAAGTCACGGTGAAACGATTTTTAGGGAAATTTGAATCGTGAGAAAAGGCTCAACTTAGATAAAAAATTTATACTTATCCAAATTCTAATAATTTAAGTTTATAAATACATTTTCTGTTTCTGAATATTTTCAAAATCCAAACAAGTTTTTAAGACTAAAAAAAAAAAGTATTTTTTTTTAAAAAAACTAATTAATTAATTTGTTGCTGTATTTGACATTTGAGTAAGAATTCAAAACTGATTTTGTTACCATAACGAACTTTAATATCTTTTCTAGATACAACTTAATTTTTAGTTGTATTGTATGTCTAATTGATTTATTGATTTTTTGAAATGTTAAATAAGCCAAGGACATATTAAATAGAAAATTGAAAGTTGAAGTACCCATTTAAATTATTAAAGTTTATAACGAACAAAACACGTCCACCTTCTTTTTCTTTGAAAAATAAACATTATTAAACCACAAGTAAAATTACAATCAAATTTCTCACGAAGAAGAATAGACGACACCCAATTAGGATAAAGTGACAAAATCCCAAAGGCTTCCACACCTTCAGGGGAAAGAAGGAATGAATCAAAACATGTAATCCAGAAACTCATTGCACTAAGGTATTGCCACATCAATTAGGTTTCTGGTGATACAAAAGTTTCCTGCAATCAACGTTACTCTTTCACATCACCCTCCAAATCGGCCAAAATAAATTGCTACAAAACTCATATTAACAGCACATGTTTTGATCATAACGATGGTGTGATGGCTGGTAAACATATTTTACTCGAGCTCGGAAGGCCAATACCTTCTTGGTACTACAGTTTGACTGCACAACAATTTTATATCGTTGCAATCCCTTGGCTTCTGGGCTGCATAACCATAAACTACCTCCGGAGCACTGAGGACTTTCAACTTTTCTTCAATGATAATTTGGTACTGAAAGTTGTCCTTGCTTGTATCTACATTTTTAGAAATGATTCTTAAGAATCAGATTTCATTTCCTTTTGTTTTCTCTATTGTTCAGGTGTTCTGTAAATAGCACGAGGGAAGGTTTCCCTGTCTGGGCGAGGTGAAAGAAATCATTTGTAGTCAACTTGCTGGTTGAAGAAGAGTACGGCTGTCAATCCAGTA

mRNA sequence

ATGACTCATTCGGAAATAGATCAGAGATTGAATAATCACACACAACGATACGCTTATCGTCAAATTCAACTCTCCGTGTTCTTACAGGTTTCTGGTGATACAAAAGTTTCCTGCAATCAACGTTACTCTTTCACATCACCCTCCAAATCGGCCAAAATAAATTGCTACAAAACTCATATTAACAGCACATGTTTTGATCATAACGATGGTGTGATGGCTGGTAAACATATTTTACTCGAGCTCGGAAGGCCAATACCTTCTTGGTACTACAGTTTGACTGCACAACAATTTTATATCGTTGCAATCCCTTGGCTTCTGGGCTGCATAACCATAAACTACCTCCGGAGCACTGAGGACTTTCAACTTTTCTTCAATGATAATTTGGTGTTCTGTAAATAG

Coding sequence (CDS)

ATGACTCATTCGGAAATAGATCAGAGATTGAATAATCACACACAACGATACGCTTATCGTCAAATTCAACTCTCCGTGTTCTTACAGGTTTCTGGTGATACAAAAGTTTCCTGCAATCAACGTTACTCTTTCACATCACCCTCCAAATCGGCCAAAATAAATTGCTACAAAACTCATATTAACAGCACATGTTTTGATCATAACGATGGTGTGATGGCTGGTAAACATATTTTACTCGAGCTCGGAAGGCCAATACCTTCTTGGTACTACAGTTTGACTGCACAACAATTTTATATCGTTGCAATCCCTTGGCTTCTGGGCTGCATAACCATAAACTACCTCCGGAGCACTGAGGACTTTCAACTTTTCTTCAATGATAATTTGGTGTTCTGTAAATAG

Protein sequence

MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHINSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLVFCK*
Homology
[Close]
BLAST of Csa6G185250 vs. TrEMBL
Match: A0A0A0KBM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G185250 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60
           MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI
Sbjct: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60

Query: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120
           NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF
Sbjct: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120

Query: 121 QLFFNDNLVFCK 133
           QLFFNDNLVFCK
Sbjct: 121 QLFFNDNLVFCK 132

[Close]
BLAST of Csa6G185250 vs. TrEMBL
Match: M5WCM6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011028mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+HI   LG    P WYYSL A +F  +A  WLLG    ++L+ T  F++F ND LV
Sbjct: 130 VMAGEHIFPMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELV 189

Query: 131 FCK 133
           F K
Sbjct: 190 FSK 192

[Close]
BLAST of Csa6G185250 vs. NCBI nr
Match: gi|700191871|gb|KGN47075.1| (hypothetical protein Csa_6G185250 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 2.8e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60
           MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI
Sbjct: 1   MTHSEIDQRLNNHTQRYAYRQIQLSVFLQVSGDTKVSCNQRYSFTSPSKSAKINCYKTHI 60

Query: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120
           NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF
Sbjct: 61  NSTCFDHNDGVMAGKHILLELGRPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDF 120

Query: 121 QLFFNDNLVFCK 133
           QLFFNDNLVFCK
Sbjct: 121 QLFFNDNLVFCK 132

[Close]
BLAST of Csa6G185250 vs. NCBI nr
Match: gi|645216439|ref|XP_008221145.1| (PREDICTED: selT-like protein [Prunus mume])

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+HI   LG    P WYYSL A +F  +A  WLLG    ++L+ T  F++F ND LV
Sbjct: 130 VMAGEHIFPMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELV 189

Query: 131 FCK 133
           F K
Sbjct: 190 FSK 192

[Close]
BLAST of Csa6G185250 vs. NCBI nr
Match: gi|595829253|ref|XP_007205839.1| (hypothetical protein PRUPE_ppa011028mg [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 

Query: 71  VMAGKHILLELG-RPIPSWYYSLTAQQFYIVAIPWLLGCITINYLRSTEDFQLFFNDNLV 130
           VMAG+HI   LG    P WYYSL A +F  +A  WLLG    ++L+ T  F++F ND LV
Sbjct: 130 VMAGEHIFPMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELV 189

Query: 131 FCK 133
           F K
Sbjct: 190 FSK 192

The following BLAST results are available for this feature:
BLAST of Csa6G185250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBM2_CUCSA1.9e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G185250 PE=4 SV=1[more]
M5WCM6_PRUPE5.3e-0649.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011028mg PE=4 SV=1[more]
BLAST of Csa6G185250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191871|gb|KGN47075.1|2.8e-72100.00hypothetical protein Csa_6G185250 [Cucumis sativus][more]
gi|645216439|ref|XP_008221145.1|7.7e-0649.21PREDICTED: selT-like protein [Prunus mume][more]
gi|595829253|ref|XP_007205839.1|7.7e-0649.21hypothetical protein PRUPE_ppa011028mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU124407cucumber EST collection version 3.0transcribed_cluster
CU144820cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G185250.1Csa6G185250.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU124407CU124407transcribed_cluster
CU144820CU144820transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G185250Lsi10G014390Bottle gourd (USVL1VR-Ls)culsiB413
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G185250Cucurbita pepo (Zucchini)cpecuB290
Csa6G185250Cucurbita pepo (Zucchini)cpecuB752
Csa6G185250Cucumber (Gy14) v2cgybcuB282
Csa6G185250Melon (DHL92) v3.6.1cumedB423
Csa6G185250Silver-seed gourdcarcuB0370
Csa6G185250Silver-seed gourdcarcuB0544
Csa6G185250Watermelon (97103) v2cuwmbB427
Csa6G185250Watermelon (97103) v2cuwmbB484
Csa6G185250Wax gourdcuwgoB605
Csa6G185250Wax gourdcuwgoB641
Csa6G185250Cucumber (Chinese Long) v2cucuB165
Csa6G185250Cucumber (Gy14) v1cgycuB202
Csa6G185250Cucurbita maxima (Rimu)cmacuB553
Csa6G185250Cucurbita maxima (Rimu)cmacuB617
Csa6G185250Cucurbita moschata (Rifu)cmocuB543
Csa6G185250Cucurbita moschata (Rifu)cmocuB609
Csa6G185250Melon (DHL92) v3.5.1cumeB423
Csa6G185250Watermelon (Charleston Gray)cuwcgB437
Csa6G185250Watermelon (Charleston Gray)cuwcgB494
Csa6G185250Watermelon (97103) v1cuwmB490
Csa6G185250Watermelon (97103) v1cuwmB512