Csa6G182660 (gene) Cucumber (Chinese Long) v2

NameCsa6G182660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11876446 .. 11876735 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACCAGAATGTCGCAAAAAGTTTGTTGGGATACTTTCGACGACGCAGCTACAGCCAACGATGGGGAAAATTTCCCCAGCGTACGTGTTAGTACGTTGCAGAGGCCTTCTGTGACACCACGTCACAGAAGGTTTTTTGCGACATTGCGTCGTCGAAAGCTTCCGCGGTGTGACATCGTGATTAACTTATATGTAATGATAACATAATTACAGTGCCTCTTGAACATATCACTCAATCGATCACCTAGGTTGTCTCAAGTGTGAGACTTCCTCTCATAGTAACTTAG

mRNA sequence

ATGTCGACCAGAATGTCGCAAAAAGTTTGTTGGGATACTTTCGACGACGCAGCTACAGCCAACGATGGGGAAAATTTCCCCAGCGTACGTGTTAGTACGTTGCAGAGGCCTTCTGTGACACCACGTCACAGAAGGTTTTTTGCGACATTGCGTCGTCGAAAGCTTCCGCGGTGTGACATCGTTGTCTCAAGTGTGAGACTTCCTCTCATAGTAACTTAG

Coding sequence (CDS)

ATGTCGACCAGAATGTCGCAAAAAGTTTGTTGGGATACTTTCGACGACGCAGCTACAGCCAACGATGGGGAAAATTTCCCCAGCGTACGTGTTAGTACGTTGCAGAGGCCTTCTGTGACACCACGTCACAGAAGGTTTTTTGCGACATTGCGTCGTCGAAAGCTTCCGCGGTGTGACATCGTTGTCTCAAGTGTGAGACTTCCTCTCATAGTAACTTAG

Protein sequence

MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDIVVSSVRLPLIVT*
BLAST of Csa6G182660 vs. TrEMBL
Match: A0A0A0KC38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182660 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDI 60
          MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDI
Sbjct: 1  MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDI 60

Query: 61 VVSSVRLPLIVT 73
          VVSSVRLPLIVT
Sbjct: 61 VVSSVRLPLIVT 72

BLAST of Csa6G182660 vs. NCBI nr
Match: gi|700191859|gb|KGN47063.1| (hypothetical protein Csa_6G182660 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDI 60
          MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDI
Sbjct: 1  MSTRMSQKVCWDTFDDAATANDGENFPSVRVSTLQRPSVTPRHRRFFATLRRRKLPRCDI 60

Query: 61 VVSSVRLPLIVT 73
          VVSSVRLPLIVT
Sbjct: 61 VVSSVRLPLIVT 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KC38_CUCSA3.7e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182660 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700191859|gb|KGN47063.1|5.3e-33100.00hypothetical protein Csa_6G182660 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G182660.1Csa6G182660.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 69..72
scor